Cow genome map

Conread name: Mixn-0014o22

Conread position: 1-140
Cow position: chr20:11331356-11331498 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 49, 0

Conread position: 1-142
Cow position: chr20:28282385-28282243 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 53, 43

Conread position: 1-186
Cow position: chr20:22222287-22222473 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 150
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 49, 162

Conread position: 1-186
Cow position: chr20:26738095-26737908 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 151
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 49, 171

Conread position: 1-186
Cow position: chr20:30816515-30816704 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 1-203
Cow position: chr20:9223170-9222966 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 163
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 49, 171

Conread position: 1-208
Cow position: chr20:12177172-12177381 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-215
Cow position: chr20:35037287-35037069 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 172
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 12, 170

Conread position: 1-232
Cow position: chr20:9536220-9535990 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 49, 103

Conread position: 1-238
Cow position: chr20:37154648-37154888 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 172

Conread position: 1-260
Cow position: chr20:13303980-13304241 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 165
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 49, 171

Conread position: 1-260
Cow position: chr20:16559214-16559475 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-264
Cow position: chr20:13325428-13325163 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 171

Conread position: 1-264
Cow position: chr20:15527063-15526798 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-264
Cow position: chr20:16944815-16944567 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 49, 12

Conread position: 1-264
Cow position: chr20:17657914-17658179 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 76

Conread position: 1-264
Cow position: chr20:30689192-30688928 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 40

Conread position: 1-265
Cow position: chr20:19441226-19440960 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 171

Conread position: 1-265
Cow position: chr20:39234549-39234283 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-267
Cow position: chr20:9996852-9996583 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 41

Conread position: 1-270
Cow position: chr20:753759-753485 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 172

Conread position: 1-270
Cow position: chr20:774976-774705 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-270
Cow position: chr20:826098-825827 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 171

Conread position: 1-270
Cow position: chr20:3808455-3808726 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr20:5086019-5086290 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr20:5503429-5503700 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr20:6135673-6135942 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 81

Conread position: 1-270
Cow position: chr20:6239817-6240087 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 95

Conread position: 1-270
Cow position: chr20:7810524-7810793 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 43

Conread position: 1-270
Cow position: chr20:8445730-8445460 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 162

Conread position: 1-270
Cow position: chr20:8970575-8970846 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr20:10790774-10790503 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr20:13506245-13506511 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 43

Conread position: 1-270
Cow position: chr20:14741505-14741233 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr20:14925324-14925595 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr20:18092582-18092854 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 174

Conread position: 1-270
Cow position: chr20:19306067-19306338 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr20:20092617-20092346 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr20:20439651-20439923 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 172

Conread position: 1-270
Cow position: chr20:21719875-21719605 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 84

Conread position: 1-270
Cow position: chr20:22048684-22048413 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr20:22060859-22061130 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr20:24567951-24568222 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 171

Conread position: 1-270
Cow position: chr20:28246932-28247203 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr20:28444031-28444301 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 13

Conread position: 1-270
Cow position: chr20:30146753-30146482 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr20:30384927-30385198 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr20:30431589-30431319 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 170

Conread position: 1-270
Cow position: chr20:30479426-30479156 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr20:30579181-30578910 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr20:31785063-31785326 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 43

Conread position: 1-270
Cow position: chr20:33597646-33597917 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr20:34231552-34231809 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 43

Conread position: 1-270
Cow position: chr20:35127987-35127717 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 124

Conread position: 1-270
Cow position: chr20:38957456-38957185 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-272
Cow position: chr20:26799966-26800239 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-272
Cow position: chr20:32164786-32165054 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 114

Conread position: 1-273
Cow position: chr20:27876804-27876525 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 180

Conread position: 1-274
Cow position: chr20:6550680-6550954 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr20:7597539-7597813 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 171

Conread position: 1-274
Cow position: chr20:12435082-12435351 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 207
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 48, 12

Conread position: 1-274
Cow position: chr20:12567998-12568272 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr20:13766210-13765937 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 154

Conread position: 1-274
Cow position: chr20:15090054-15090331 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr20:15295336-15295064 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 12

Conread position: 1-274
Cow position: chr20:22208939-22208666 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr20:23804562-23804835 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr20:24399547-24399821 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr20:25845307-25845579 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 43

Conread position: 1-274
Cow position: chr20:34968300-34968027 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-277
Cow position: chr20:5538490-5538223 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 95

Conread position: 1-277
Cow position: chr20:13654016-13654287 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 125

Conread position: 1-277
Cow position: chr20:23466331-23466609 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 166

Conread position: 1-298
Cow position: chr20:30737592-30737280 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 171

Conread position: 1-300
Cow position: chr20:14756948-14757265 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 225
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 48, 175

Conread position: 1-312
Cow position: chr20:31504648-31504333 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 2-215
Cow position: chr20:16515640-16515439 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 47, 128

Conread position: 2-237
Cow position: chr20:22185696-22185931 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 111

Conread position: 2-266
Cow position: chr20:14672655-14672389 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 72

Conread position: 2-267
Cow position: chr20:14721061-14721325 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 173

Conread position: 2-270
Cow position: chr20:16106765-16106495 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 170

Conread position: 2-301
Cow position: chr20:33181181-33181493 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 170

Conread position: 3-251
Cow position: chr20:32639327-32639075 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 170

Conread position: 3-267
Cow position: chr20:12047809-12047546 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 168

Conread position: 3-270
Cow position: chr20:28294637-28294359 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 203
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 47, 175

Conread position: 3-270
Cow position: chr20:35159269-35159535 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 111

Conread position: 3-316
Cow position: chr20:28034549-28034857 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 231
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 53, 82

Conread position: 3-319
Cow position: chr20:19425508-19425190 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 121

Conread position: 4-248
Cow position: chr20:40255978-40255725 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 46, 176

Conread position: 4-270
Cow position: chr20:18490262-18489993 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 9

Conread position: 4-288
Cow position: chr20:14512010-14511727 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 206

Conread position: 5-270
Cow position: chr20:28887686-28887423 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 198
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 45, 167

Conread position: 6-270
Cow position: chr20:15799647-15799913 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 163

Conread position: 8-186
Cow position: chr20:6054045-6054224 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 45, 163

Conread position: 8-234
Cow position: chr20:5269720-5269945 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 181
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 42, 115

Conread position: 8-262
Cow position: chr20:15068125-15067872 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 164

Conread position: 8-270
Cow position: chr20:13575404-13575662 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 62

Conread position: 14-168
Cow position: chr20:8786597-8786440 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 131
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 36, 0

Conread position: 14-251
Cow position: chr20:31157905-31157666 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 158

Conread position: 14-259
Cow position: chr20:14745917-14745670 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 158

Conread position: 14-264
Cow position: chr20:12996955-12997214 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 165

Conread position: 16-270
Cow position: chr20:19018101-19018357 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 156

Show alignments to all cow chromosomes.