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Cow genome map

           
Conread name:
           
Mixn-0015i14
        

               
Conread position:
               
1-139
               

               
Cow position:
               
chr1:4416970-4416832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 17
               

               
Conread position:
               
2-348
               

               
Cow position:
               
chr1:55137628-55137275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
102, 18
               

               
Conread position:
               
2-372
               

               
Cow position:
               
chr1:12596294-12595928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 18
               

               
Conread position:
               
2-376
               

               
Cow position:
               
chr1:66752389-66752014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
2-390
               

               
Cow position:
               
chr1:67831263-67830873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
2-390
               

               
Cow position:
               
chr1:86597426-86597814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
2-415
               

               
Cow position:
               
chr1:57421522-57421111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 18
               

               
Conread position:
               
2-429
               

               
Cow position:
               
chr1:69670604-69670179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
150, 18
               

               
Conread position:
               
2-434
               

               
Cow position:
               
chr1:35769055-35769483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 18
               

               
Conread position:
               
2-435
               

               
Cow position:
               
chr1:13451659-13452092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
2-435
               

               
Cow position:
               
chr1:78807909-78808336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 18
               

               
Conread position:
               
2-435
               

               
Cow position:
               
chr1:82908956-82908523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
145, 18
               

               
Conread position:
               
2-435
               

               
Cow position:
               
chr1:86544093-86543659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
2-437
               

               
Cow position:
               
chr1:13404514-13404079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
2-440
               

               
Cow position:
               
chr1:40578387-40578834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
2-448
               

               
Cow position:
               
chr1:97755128-97755578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
114, 30
               

               
Conread position:
               
2-451
               

               
Cow position:
               
chr1:51968080-51968523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 18
               

               
Conread position:
               
2-475
               

               
Cow position:
               
chr1:68951253-68951710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
359, 18
               

               
Conread position:
               
2-511
               

               
Cow position:
               
chr1:61392183-61391669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 18
               

               
Conread position:
               
2-522
               

               
Cow position:
               
chr1:96963929-96964449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 18
               

               
Conread position:
               
3-333
               

               
Cow position:
               
chr1:33716832-33717165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 27
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr1:89185586-89185227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
52, 17
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chr1:37694872-37694523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 17
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chr1:39100650-39101018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 17
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chr1:40310621-40310966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
130, 17
               

               
Conread position:
               
3-373
               

               
Cow position:
               
chr1:57525203-57524842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
3-376
               

               
Cow position:
               
chr1:26930357-26929992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
3-376
               

               
Cow position:
               
chr1:85151567-85151201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
149, 17
               

               
Conread position:
               
3-377
               

               
Cow position:
               
chr1:53313021-53313391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 17
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr1:40963269-40962888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
140, 17
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr1:60032991-60032611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 17
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr1:74939816-74940219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
138, 17
               

               
Conread position:
               
3-429
               

               
Cow position:
               
chr1:47653698-47653280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
149, 17
               

               
Conread position:
               
3-435
               

               
Cow position:
               
chr1:1801759-1802172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 17
               

               
Conread position:
               
3-469
               

               
Cow position:
               
chr1:85774075-85774536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 12
               

               
Conread position:
               
3-505
               

               
Cow position:
               
chr1:64678320-64678810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 17
               

               
Conread position:
               
3-510
               

               
Cow position:
               
chr1:22826778-22827277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 17
               

               
Conread position:
               
3-512
               

               
Cow position:
               
chr1:68818198-68817676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 17
               

               
Conread position:
               
3-513
               

               
Cow position:
               
chr1:68619308-68618809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 27
               

               
Conread position:
               
3-522
               

               
Cow position:
               
chr1:41696672-41697187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 17
               

               
Conread position:
               
3-522
               

               
Cow position:
               
chr1:43353038-43352523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 17
               

               
Conread position:
               
3-524
               

               
Cow position:
               
chr1:13638051-13637529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 17
               

               
Conread position:
               
3-533
               

               
Cow position:
               
chr1:1981500-1980970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 17
               

               
Conread position:
               
4-462
               

               
Cow position:
               
chr1:11914259-11913806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 19
               

               
Conread position:
               
4-511
               

               
Cow position:
               
chr1:57576150-57575644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 16
               

               
Conread position:
               
4-559
               

               
Cow position:
               
chr1:57573712-57573162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
139, 16
               

               
Conread position:
               
5-321
               

               
Cow position:
               
chr1:99792402-99792740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 15
               

               
Conread position:
               
5-371
               

               
Cow position:
               
chr1:80869721-80870090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 15
               

               
Conread position:
               
5-376
               

               
Cow position:
               
chr1:58419537-58419916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 20
               

               
Conread position:
               
5-384
               

               
Cow position:
               
chr1:71946751-71946386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 16
               

               
Conread position:
               
5-389
               

               
Cow position:
               
chr1:11873741-11873367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 15
               

               
Conread position:
               
5-390
               

               
Cow position:
               
chr1:99136817-99136439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 12
               

               
Conread position:
               
5-414
               

               
Cow position:
               
chr1:29671897-29671495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 15
               

               
Conread position:
               
5-418
               

               
Cow position:
               
chr1:101822883-101822476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 30
               

               
Conread position:
               
5-442
               

               
Cow position:
               
chr1:44154880-44155302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 15
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr1:63391159-63390697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 20
               

               
Conread position:
               
5-465
               

               
Cow position:
               
chr1:79590713-79591173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 19
               

               
Conread position:
               
5-495
               

               
Cow position:
               
chr1:3720813-3720339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 15
               

               
Conread position:
               
5-496
               

               
Cow position:
               
chr1:81356090-81355597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 25
               

               
Conread position:
               
5-496
               

               
Cow position:
               
chr1:99642746-99642263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 15
               

               
Conread position:
               
5-501
               

               
Cow position:
               
chr1:84812337-84811827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
5-509
               

               
Cow position:
               
chr1:89349595-89350084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 15
               

               
Conread position:
               
5-510
               

               
Cow position:
               
chr1:81290134-81290627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 15
               

               
Conread position:
               
5-512
               

               
Cow position:
               
chr1:74822063-74822574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 25
               

               
Conread position:
               
5-512
               

               
Cow position:
               
chr1:79844082-79844588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 18
               

               
Conread position:
               
5-512
               

               
Cow position:
               
chr1:85028574-85029074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 15
               

               
Conread position:
               
5-513
               

               
Cow position:
               
chr1:53458319-53458821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 15
               

               
Conread position:
               
5-513
               

               
Cow position:
               
chr1:84255371-84255891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 15
               

               
Conread position:
               
5-521
               

               
Cow position:
               
chr1:95499884-95499363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 15
               

               
Conread position:
               
5-522
               

               
Cow position:
               
chr1:22728662-22729189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 15
               

               
Conread position:
               
5-522
               

               
Cow position:
               
chr1:54207207-54206685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 103
               

               
Conread position:
               
5-526
               

               
Cow position:
               
chr1:52039250-52039769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 15
               

               
Conread position:
               
5-526
               

               
Cow position:
               
chr1:53397597-53398109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 15
               

               
Conread position:
               
5-531
               

               
Cow position:
               
chr1:70828522-70829042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 17
               

               
Conread position:
               
5-624
               

               
Cow position:
               
chr1:94226935-94226316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 15
               

               
Conread position:
               
5-636
               

               
Cow position:
               
chr1:3790441-3789815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
6-432
               

               
Cow position:
               
chr1:64818276-64817849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 14
               

               
Conread position:
               
6-516
               

               
Cow position:
               
chr1:31934120-31934634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 165
               

               
Conread position:
               
6-533
               

               
Cow position:
               
chr1:11854077-11853546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 382
               

               
Conread position:
               
6-552
               

               
Cow position:
               
chr1:89742398-89741833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 14
               

               
Conread position:
               
7-415
               

               
Cow position:
               
chr1:73433256-73432847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 13
               

               
Conread position:
               
7-512
               

               
Cow position:
               
chr1:34159450-34159959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 13
               

               
Conread position:
               
7-533
               

               
Cow position:
               
chr1:3323469-3324013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
8-343
               

               
Cow position:
               
chr1:20125229-20125560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 21
               

               
Conread position:
               
8-358
               

               
Cow position:
               
chr1:68276024-68276376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 22
               

               
Conread position:
               
8-358
               

               
Cow position:
               
chr1:82861388-82861743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
8-367
               

               
Cow position:
               
chr1:15311482-15311840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
8-368
               

               
Cow position:
               
chr1:67009112-67008772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
8-372
               

               
Cow position:
               
chr1:19145313-19144949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
137, 87
               

               
Conread position:
               
8-374
               

               
Cow position:
               
chr1:81180369-81179994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 15
               

               
Conread position:
               
8-414
               

               
Cow position:
               
chr1:3035374-3034973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 58
               

               
Conread position:
               
8-418
               

               
Cow position:
               
chr1:82504583-82505006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 12
               

               
Conread position:
               
8-443
               

               
Cow position:
               
chr1:54199764-54199323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 12
               

               
Conread position:
               
8-465
               

               
Cow position:
               
chr1:102647653-102647198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 12
               

               
Conread position:
               
8-466
               

               
Cow position:
               
chr1:55135459-55135912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 40
               

               
Conread position:
               
8-469
               

               
Cow position:
               
chr1:64251451-64250973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 257
               

               
Conread position:
               
8-496
               

               
Cow position:
               
chr1:21786938-21787442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 441
               

               
Conread position:
               
8-496
               

               
Cow position:
               
chr1:26702581-26702101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 12
               

               
Conread position:
               
8-512
               

               
Cow position:
               
chr1:61005944-61005440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 15
               

               
Conread position:
               
8-512
               

               
Cow position:
               
chr1:81569420-81568905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 12
               

               
Conread position:
               
8-523
               

               
Cow position:
               
chr1:94211850-94212358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 12
               

               
Conread position:
               
8-526
               

               
Cow position:
               
chr1:45289255-45288736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
8-528
               

               
Cow position:
               
chr1:82936968-82936458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 12
               

               
Conread position:
               
8-546
               

               
Cow position:
               
chr1:48105820-48105279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 12
               

               
Conread position:
               
8-560
               

               
Cow position:
               
chr1:36874634-36875198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 12
               

               
Conread position:
               
8-622
               

               
Cow position:
               
chr1:68253207-68253838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 12
               

               
Conread position:
               
8-622
               

               
Cow position:
               
chr1:89342372-89341751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 12
               

               
Conread position:
               
8-647
               

               
Cow position:
               
chr1:98551337-98551962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 25
               

               
Conread position:
               
9-320
               

               
Cow position:
               
chr1:73756712-73757012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
134, 66
               

               
Conread position:
               
9-376
               

               
Cow position:
               
chr1:82378412-82378768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
118, 124
               

               
Conread position:
               
9-377
               

               
Cow position:
               
chr1:82406940-82406572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 48
               

               
Conread position:
               
9-460
               

               
Cow position:
               
chr1:97622586-97622150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
126, 160
               

               
Conread position:
               
9-496
               

               
Cow position:
               
chr1:35162026-35162516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 11
               

               
Conread position:
               
9-622
               

               
Cow position:
               
chr1:96136119-96136686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
586, 11
               

               
Conread position:
               
10-368
               

               
Cow position:
               
chr1:41004747-41004391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 11
               

               
Conread position:
               
10-373
               

               
Cow position:
               
chr1:50634794-50634424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
160, 91
               

               
Conread position:
               
10-376
               

               
Cow position:
               
chr1:73522519-73522168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
116, 79
               

               
Conread position:
               
10-377
               

               
Cow position:
               
chr1:101547418-101547050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
10-512
               

               
Cow position:
               
chr1:72304749-72304268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 10
               

               
Conread position:
               
10-513
               

               
Cow position:
               
chr1:91039541-91039050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 10
               

               
Conread position:
               
11-325
               

               
Cow position:
               
chr1:40062066-40062381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 9
               

               
Conread position:
               
11-332
               

               
Cow position:
               
chr1:43893547-43893861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 9
               

               
Conread position:
               
11-367
               

               
Cow position:
               
chr1:69941346-69940996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 9
               

               
Conread position:
               
11-368
               

               
Cow position:
               
chr1:4589861-4589502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
141, 9
               

               
Conread position:
               
11-371
               

               
Cow position:
               
chr1:665990-666340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 7
               

               
Conread position:
               
11-372
               

               
Cow position:
               
chr1:99808110-99807745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
115, 166
               

               
Conread position:
               
11-373
               

               
Cow position:
               
chr1:5162445-5162071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
72, 6
               

               
Conread position:
               
11-373
               

               
Cow position:
               
chr1:71045370-71045733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 19
               

               
Conread position:
               
11-376
               

               
Cow position:
               
chr1:10719871-10719501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 6
               

               
Conread position:
               
11-383
               

               
Cow position:
               
chr1:76020061-76019708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 13
               

               
Conread position:
               
11-384
               

               
Cow position:
               
chr1:70282562-70282924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 6
               

               
Conread position:
               
11-418
               

               
Cow position:
               
chr1:55163544-55163949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 9
               

               
Conread position:
               
11-428
               

               
Cow position:
               
chr1:95017892-95017489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 20
               

               
Conread position:
               
11-457
               

               
Cow position:
               
chr1:20001128-20000681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
108, 9
               

               
Conread position:
               
11-460
               

               
Cow position:
               
chr1:31348813-31348367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 19
               

               
Conread position:
               
11-465
               

               
Cow position:
               
chr1:72035310-72034849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 9
               

               
Conread position:
               
11-474
               

               
Cow position:
               
chr1:42554866-42555350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
40, 6
               

               
Conread position:
               
11-474
               

               
Cow position:
               
chr1:53424812-53425261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 12
               

               
Conread position:
               
11-481
               

               
Cow position:
               
chr1:19465685-19466144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
123, 9
               

               
Conread position:
               
11-510
               

               
Cow position:
               
chr1:28176629-28177123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
11-510
               

               
Cow position:
               
chr1:56225097-56225589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 9
               

               
Conread position:
               
11-511
               

               
Cow position:
               
chr1:8349689-8349205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
11-511
               

               
Cow position:
               
chr1:68854801-68855286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
350, 9
               

               
Conread position:
               
11-512
               

               
Cow position:
               
chr1:51394029-51394540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 9
               

               
Conread position:
               
11-520
               

               
Cow position:
               
chr1:102350150-102349621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 9
               

               
Conread position:
               
11-524
               

               
Cow position:
               
chr1:4032267-4032767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
9, 101
               

               
Conread position:
               
11-537
               

               
Cow position:
               
chr1:55357661-55357150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 9
               

               
Conread position:
               
11-615
               

               
Cow position:
               
chr1:54732824-54732260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
484, 9
               

               
Conread position:
               
12-368
               

               
Cow position:
               
chr1:41735998-41735652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 5
               

               
Conread position:
               
12-466
               

               
Cow position:
               
chr1:53374053-53374509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 154
               

               
Conread position:
               
12-469
               

               
Cow position:
               
chr1:92963009-92963474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 239
               

               
Conread position:
               
12-512
               

               
Cow position:
               
chr1:72012184-72011690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 55
               

               
Conread position:
               
12-560
               

               
Cow position:
               
chr1:67821598-67821050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 8
               

               
Conread position:
               
13-431
               

               
Cow position:
               
chr1:69539884-69540332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
96, 18
               

               
Conread position:
               
13-451
               

               
Cow position:
               
chr1:24235897-24235458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 7
               

               
Conread position:
               
18-368
               

               
Cow position:
               
chr1:7657694-7657341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
129, 94
               

               
Conread position:
               
18-432
               

               
Cow position:
               
chr1:61724395-61723974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 79
               

               
Conread position:
               
18-453
               

               
Cow position:
               
chr1:61564423-61564856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 38
               

               
Conread position:
               
19-309
               

               
Cow position:
               
chr1:51983220-51983497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 108
               

               
Conread position:
               
19-348
               

               
Cow position:
               
chr1:44136825-44136514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
19-373
               

               
Cow position:
               
chr1:101007980-101007642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
19-376
               

               
Cow position:
               
chr1:78783173-78783527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 12
               

               
Conread position:
               
19-378
               

               
Cow position:
               
chr1:91066521-91066171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 5
               

               
Conread position:
               
19-466
               

               
Cow position:
               
chr1:44769483-44769033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 145
               

               
Conread position:
               
19-469
               

               
Cow position:
               
chr1:53495088-53495539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 147
               

               
Conread position:
               
19-611
               

               
Cow position:
               
chr1:82884759-82884183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 146
               

               
Conread position:
               
20-348
               

               
Cow position:
               
chr1:7416365-7416695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
132, 178
               

               
Conread position:
               
20-348
               

               
Cow position:
               
chr1:17286784-17286454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
123, 165
               

               
Conread position:
               
20-348
               

               
Cow position:
               
chr1:89492353-89492025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
127, 163
               

               
Conread position:
               
20-348
               

               
Cow position:
               
chr1:91733508-91733838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 178
               

               
Conread position:
               
20-350
               

               
Cow position:
               
chr1:44244866-44244535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
132, 70
               

               
Conread position:
               
20-373
               

               
Cow position:
               
chr1:98985296-98984939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
123, 145
               

               
Conread position:
               
20-390
               

               
Cow position:
               
chr1:62223811-62224183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 169
               

               
Conread position:
               
20-390
               

               
Cow position:
               
chr1:91902907-91903282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
123, 38
               

               
Conread position:
               
20-415
               

               
Cow position:
               
chr1:60114657-60115054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 160
               

               
Conread position:
               
20-415
               

               
Cow position:
               
chr1:88625079-88625476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
127, 169
               

               
Conread position:
               
20-425
               

               
Cow position:
               
chr1:84447569-84447982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
121, 169
               

               
Conread position:
               
20-433
               

               
Cow position:
               
chr1:90392871-90392456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 178
               

               
Conread position:
               
20-518
               

               
Cow position:
               
chr1:3167439-3166947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
334, 113
               

               
Conread position:
               
20-522
               

               
Cow position:
               
chr1:69539324-69539821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 160
               

               
Conread position:
               
22-448
               

               
Cow position:
               
chr1:100400569-100400134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 103
               

               
Conread position:
               
23-333
               

               
Cow position:
               
chr1:57639871-57639585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
23-358
               

               
Cow position:
               
chr1:31765764-31765425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 64
               

               
Conread position:
               
23-365
               

               
Cow position:
               
chr1:81228700-81228373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 43
               

               
Conread position:
               
23-367
               

               
Cow position:
               
chr1:77620176-77620515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 200
               

               
Conread position:
               
23-373
               

               
Cow position:
               
chr1:8532584-8532234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 151
               

               
Conread position:
               
23-531
               

               
Cow position:
               
chr1:86113783-86113257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 140
               

               
Conread position:
               
24-460
               

               
Cow position:
               
chr1:63596428-63595984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 66
               

               
Conread position:
               
24-460
               

               
Cow position:
               
chr1:73584791-73584340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 169
               

               
Conread position:
               
25-414
               

               
Cow position:
               
chr1:1403831-1403455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 79
               

               
Conread position:
               
25-531
               

               
Cow position:
               
chr1:52496410-52496912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 26
               

               
Conread position:
               
25-538
               

               
Cow position:
               
chr1:89834867-89835398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
127, 146
               

               
Conread position:
               
26-345
               

               
Cow position:
               
chr1:36613642-36613326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 216
               

               
Conread position:
               
26-368
               

               
Cow position:
               
chr1:76223058-76222718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 147
               

               
Conread position:
               
26-410
               

               
Cow position:
               
chr1:99118022-99118394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 12
               

               
Conread position:
               
26-415
               

               
Cow position:
               
chr1:44517301-44517693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
14, 165
               

               
Conread position:
               
26-460
               

               
Cow position:
               
chr1:92370724-92370299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 47
               

               
Conread position:
               
26-460
               

               
Cow position:
               
chr1:100421477-100421895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
38, 118
               

               
Conread position:
               
26-469
               

               
Cow position:
               
chr1:78091665-78092116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 215
               

               
Conread position:
               
26-471
               

               
Cow position:
               
chr1:36997830-36998266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 143
               

               
Conread position:
               
26-471
               

               
Cow position:
               
chr1:91817138-91816690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 104
               

               
Conread position:
               
26-511
               

               
Cow position:
               
chr1:8256-8737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 64
               

               
Conread position:
               
26-512
               

               
Cow position:
               
chr1:69695376-69694873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 100
               

               
Conread position:
               
26-522
               

               
Cow position:
               
chr1:38278399-38277896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
225, 88
               

               
Conread position:
               
26-579
               

               
Cow position:
               
chr1:39069325-39068771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 146
               

               
Conread position:
               
27-372
               

               
Cow position:
               
chr1:90640666-90641009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 69
               

               
Conread position:
               
27-475
               

               
Cow position:
               
chr1:26942945-26943393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
122, 18
               

               
Conread position:
               
28-531
               

               
Cow position:
               
chr1:22730397-22730872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 144
               

               
Conread position:
               
29-376
               

               
Cow position:
               
chr1:52329891-52329549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 75
               

               
Conread position:
               
29-531
               

               
Cow position:
               
chr1:62963920-62964407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
30-372
               

               
Cow position:
               
chr1:44164714-44165058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
31-525
               

               
Cow position:
               
chr1:874281-874790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 7
               

               
Conread position:
               
31-566
               

               
Cow position:
               
chr1:90868800-90868260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 117
               

               
Conread position:
               
32-382
               

               
Cow position:
               
chr1:74947506-74947135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
37-512
               

               
Cow position:
               
chr1:100551606-100552098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 200
               

               
Conread position:
               
38-372
               

               
Cow position:
               
chr1:78689570-78689914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
38-515
               

               
Cow position:
               
chr1:44126004-44125513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 202
               

               
Conread position:
               
39-348
               

               
Cow position:
               
chr1:6278106-6278426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
101, 146
               

               
Conread position:
               
39-348
               

               
Cow position:
               
chr1:62582955-62582642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
92, 155
               

               
Conread position:
               
39-429
               

               
Cow position:
               
chr1:31646860-31647239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
113, 159
               

               
Conread position:
               
40-427
               

               
Cow position:
               
chr1:15050009-15050387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
112, 121
               

               
Conread position:
               
40-460
               

               
Cow position:
               
chr1:21508038-21508463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 129
               

               
Conread position:
               
41-427
               

               
Cow position:
               
chr1:70053376-70053763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
111, 141
               

               
Conread position:
               
42-526
               

               
Cow position:
               
chr1:42256862-42256367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 132
               

               
Conread position:
               
43-365
               

               
Cow position:
               
chr1:22745277-22745593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
109, 140
               

               
Conread position:
               
44-469
               

               
Cow position:
               
chr1:20204676-20205106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 122
               

               
Conread position:
               
45-373
               

               
Cow position:
               
chr1:21678795-21679129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
95, 119
               

               
Conread position:
               
45-411
               

               
Cow position:
               
chr1:27146019-27145628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
79, 60
               

               
Conread position:
               
45-464
               

               
Cow position:
               
chr1:48444526-48444120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 117
               

               
Conread position:
               
45-471
               

               
Cow position:
               
chr1:96478333-96478781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
76, 142
               

               
Conread position:
               
45-512
               

               
Cow position:
               
chr1:3137578-3138036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
102, 69
               

               
Conread position:
               
45-524
               

               
Cow position:
               
chr1:56619044-56618520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 424
               

               
Conread position:
               
46-445
               

               
Cow position:
               
chr1:100771081-100770697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
101, 80
               

               
Conread position:
               
46-509
               

               
Cow position:
               
chr1:100705789-100706246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
97, 49
               

               
Conread position:
               
47-347
               

               
Cow position:
               
chr1:32630629-32630924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
100, 66
               

               
Conread position:
               
47-422
               

               
Cow position:
               
chr1:81350173-81349796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
96, 142
               

               
Conread position:
               
47-460
               

               
Cow position:
               
chr1:11772427-11772015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 294
               

               
Conread position:
               
47-511
               

               
Cow position:
               
chr1:24133397-24132944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 47
               

               
Conread position:
               
51-538
               

               
Cow position:
               
chr1:100740944-100741428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
5, 147
               

               
Conread position:
               
54-500
               

               
Cow position:
               
chr1:95215515-95215079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 41
               

               
Conread position:
               
54-509
               

               
Cow position:
               
chr1:22628978-22628532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
100, 168
               

               
Conread position:
               
56-410
               

               
Cow position:
               
chr1:23488847-23488489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 69
               

               
Conread position:
               
56-410
               

               
Cow position:
               
chr1:98562823-98563184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 117
               

               
Conread position:
               
58-390
               

               
Cow position:
               
chr1:98534527-98534193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
89, 95
               

               
Conread position:
               
58-525
               

               
Cow position:
               
chr1:73960365-73960836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 53
               

               
Conread position:
               
58-588
               

               
Cow position:
               
chr1:98360747-98360210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 20
               

               
Conread position:
               
59-368
               

               
Cow position:
               
chr1:34000571-34000883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
84, 114
               

               
Conread position:
               
61-367
               

               
Cow position:
               
chr1:5873305-5873001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 106
               

               
Conread position:
               
61-389
               

               
Cow position:
               
chr1:61494545-61494870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
79, 104
               

               
Conread position:
               
61-497
               

               
Cow position:
               
chr1:7350206-7350655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 104
               

               
Conread position:
               
61-541
               

               
Cow position:
               
chr1:94876016-94875526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
34, 110
               

               
Conread position:
               
63-509
               

               
Cow position:
               
chr1:42887590-42887159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 8
               

               
Conread position:
               
64-561
               

               
Cow position:
               
chr1:57901066-57900552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 73
               

               
Conread position:
               
67-340
               

               
Cow position:
               
chr1:23969361-23969093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
76, 104
               

               
Conread position:
               
67-348
               

               
Cow position:
               
chr1:39555055-39555328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
85, 8
               

               
Conread position:
               
71-348
               

               
Cow position:
               
chr1:97513404-97513125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
72, 94
               

               
Conread position:
               
72-460
               

               
Cow position:
               
chr1:80988028-80988417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
71, 55
               

               
Conread position:
               
73-332
               

               
Cow position:
               
chr1:732245-731998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
70, 92
               

               
Conread position:
               
74-509
               

               
Cow position:
               
chr1:12464972-12464544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 72
               

               
Conread position:
               
74-531
               

               
Cow position:
               
chr1:33331389-33330955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 51
               

               
Conread position:
               
75-340
               

               
Cow position:
               
chr1:69445056-69445308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
71, 45
               

               
Conread position:
               
75-384
               

               
Cow position:
               
chr1:49839204-49839495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
293, 68
               

               
Conread position:
               
75-518
               

               
Cow position:
               
chr1:41056366-41056807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 103
               

               
Conread position:
               
78-521
               

               
Cow position:
               
chr1:100800042-100800483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 85
               

               
Conread position:
               
79-365
               

               
Cow position:
               
chr1:73561963-73561681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
68, 85
               

               
Conread position:
               
79-508
               

               
Cow position:
               
chr1:88652317-88652754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 87
               

               
Conread position:
               
82-513
               

               
Cow position:
               
chr1:18937144-18936714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 82
               

               
Conread position:
               
83-390
               

               
Cow position:
               
chr1:88942998-88943312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
46, 41
               

               
Conread position:
               
83-560
               

               
Cow position:
               
chr1:39510365-39509887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 56
               

               
Conread position:
               
84-437
               

               
Cow position:
               
chr1:21934488-21934133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 22
               

               
Conread position:
               
85-551
               

               
Cow position:
               
chr1:33997209-33996764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
267, 46
               

               
Conread position:
               
86-354
               

               
Cow position:
               
chr1:46354605-46354874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
57, 79
               

               
Conread position:
               
87-367
               

               
Cow position:
               
chr1:22448890-22448616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 83
               

               
Conread position:
               
87-474
               

               
Cow position:
               
chr1:53622662-53623040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 38
               

               
Conread position:
               
88-368
               

               
Cow position:
               
chr1:40248868-40249154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
58, 87
               

               
Conread position:
               
88-376
               

               
Cow position:
               
chr1:47008727-47009010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 38
               

               
Conread position:
               
91-681
               

               
Cow position:
               
chr1:66138018-66138609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
66, 34
               

               
Conread position:
               
92-405
               

               
Cow position:
               
chr1:33811633-33811941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 137
               

               
Conread position:
               
93-474
               

               
Cow position:
               
chr1:77720527-77720164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 69
               

               
Conread position:
               
95-373
               

               
Cow position:
               
chr1:87888108-87888377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
48, 30
               

               
Conread position:
               
96-365
               

               
Cow position:
               
chr1:68217657-68217395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
51, 70
               

               
Conread position:
               
97-338
               

               
Cow position:
               
chr1:55686514-55686275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 21
               

               
Conread position:
               
97-510
               

               
Cow position:
               
chr1:25383366-25383789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
97-560
               

               
Cow position:
               
chr1:81613089-81613556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 58
               

               
Conread position:
               
98-368
               

               
Cow position:
               
chr1:26688773-26688503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
37, 28
               

               
Conread position:
               
98-385
               

               
Cow position:
               
chr1:77099835-77099564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
45, 77
               

               
Conread position:
               
98-393
               

               
Cow position:
               
chr1:98380872-98380574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
45, 75
               

               
Conread position:
               
99-397
               

               
Cow position:
               
chr1:81472585-81472874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 139
               

               
Conread position:
               
104-398
               

               
Cow position:
               
chr1:91142444-91142152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
39, 52
               

               
Conread position:
               
107-393
               

               
Cow position:
               
chr1:5409897-5409616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
108-425
               

               
Cow position:
               
chr1:3538034-3537709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 81
               

               
Conread position:
               
110-460
               

               
Cow position:
               
chr1:634908-635264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
27, 63
               

               
Conread position:
               
110-500
               

               
Cow position:
               
chr1:72286332-72285957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
37, 45
               

               
Conread position:
               
111-454
               

               
Cow position:
               
chr1:60907079-60907441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
112-535
               

               
Cow position:
               
chr1:33719833-33720243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
114-505
               

               
Cow position:
               
chr1:19482349-19481966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 9
               

               
Conread position:
               
116-460
               

               
Cow position:
               
chr1:42968591-42968249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
116-481
               

               
Cow position:
               
chr1:40599775-40600136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 39
               

               
Conread position:
               
117-333
               

               
Cow position:
               
chr1:32631193-32631404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 53
               

               
Conread position:
               
118-377
               

               
Cow position:
               
chr1:99095090-99095345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
25, 53
               

               
Conread position:
               
118-497
               

               
Cow position:
               
chr1:81563467-81563852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 8
               

               
Conread position:
               
120-508
               

               
Cow position:
               
chr1:89510205-89509801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 46
               

               
Conread position:
               
122-365
               

               
Cow position:
               
chr1:43839256-43839496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
30, 120
               

               
Conread position:
               
122-504
               

               
Cow position:
               
chr1:97954719-97954353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
94, 115
               

               
Conread position:
               
125-368
               

               
Cow position:
               
chr1:3061860-3061615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
18, 38
               

               
Conread position:
               
127-382
               

               
Cow position:
               
chr1:24655699-24655947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
127-496
               

               
Cow position:
               
chr1:39427242-39426899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
129-399
               

               
Cow position:
               
chr1:60546534-60546256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 60
               

               
Conread position:
               
132-376
               

               
Cow position:
               
chr1:20422462-20422225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
181, 7
               

               
Conread position:
               
132-376
               

               
Cow position:
               
chr1:23099640-23099879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
132-436
               

               
Cow position:
               
chr1:45535447-45535753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 7
               

               
Conread position:
               
132-474
               

               
Cow position:
               
chr1:79165349-79164999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
132-496
               

               
Cow position:
               
chr1:99609109-99609473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
132-502
               

               
Cow position:
               
chr1:45555107-45555478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 7
               

               
Conread position:
               
132-536
               

               
Cow position:
               
chr1:13413770-13414173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
133-531
               

               
Cow position:
               
chr1:34856887-34856486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
10, 30
               

               
Conread position:
               
134-500
               

               
Cow position:
               
chr1:4290897-4291275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
135-532
               

               
Cow position:
               
chr1:49317771-49317355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
40, 7
               

               
Conread position:
               
138-469
               

               
Cow position:
               
chr1:51531523-51531830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
154, 22
               

               
Conread position:
               
139-469
               

               
Cow position:
               
chr1:25793689-25793361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
152, 21
               

               
Conread position:
               
139-528
               

               
Cow position:
               
chr1:51628751-51628372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
152, 29
               

               
Conread position:
               
143-367
               

               
Cow position:
               
chr1:56657796-56658003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
143-622
               

               
Cow position:
               
chr1:37707214-37706766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
144-428
               

               
Cow position:
               
chr1:95971791-95972072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
143, 40
               

               
Conread position:
               
144-428
               

               
Cow position:
               
chr1:95972927-95973208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
143, 40
               

               
Conread position:
               
145-338
               

               
Cow position:
               
chr1:81363751-81363926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
149, 24
               

               
Conread position:
               
145-345
               

               
Cow position:
               
chr1:31899774-31899583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
143, 12
               

               
Conread position:
               
145-361
               

               
Cow position:
               
chr1:89395348-89395566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
145, 24
               

               
Conread position:
               
145-361
               

               
Cow position:
               
chr1:97806549-97806753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
145-364
               

               
Cow position:
               
chr1:1916479-1916261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
179, 16
               

               
Conread position:
               
145-364
               

               
Cow position:
               
chr1:75967193-75967399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
145-367
               

               
Cow position:
               
chr1:52506787-52506584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
147, 23
               

               
Conread position:
               
145-367
               

               
Cow position:
               
chr1:76470416-76470626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
149, 15
               

               
Conread position:
               
145-371
               

               
Cow position:
               
chr1:21954461-21954257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
145-371
               

               
Cow position:
               
chr1:96713057-96712836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
141, 15
               

               
Conread position:
               
145-373
               

               
Cow position:
               
chr1:20002479-20002262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
146, 23
               

               
Conread position:
               
145-373
               

               
Cow position:
               
chr1:51836328-51836547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
168, 13
               

               
Conread position:
               
145-373
               

               
Cow position:
               
chr1:53423435-53423660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
155, 15
               

               
Conread position:
               
145-375
               

               
Cow position:
               
chr1:19998278-19998063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
145-376
               

               
Cow position:
               
chr1:78791550-78791327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
170, 16
               

               
Conread position:
               
145-377
               

               
Cow position:
               
chr1:28567681-28567452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
67, 16
               

               
Conread position:
               
145-382
               

               
Cow position:
               
chr1:71119268-71119502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
164, 15
               

               
Conread position:
               
145-383
               

               
Cow position:
               
chr1:30413342-30413580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
145, 15
               

               
Conread position:
               
145-384
               

               
Cow position:
               
chr1:31871177-31871413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
165, 26
               

               
Conread position:
               
145-384
               

               
Cow position:
               
chr1:56643832-56643602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
145-406
               

               
Cow position:
               
chr1:3776857-3776609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
141, 15
               

               
Conread position:
               
145-411
               

               
Cow position:
               
chr1:63905717-63905451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
218, 15
               

               
Conread position:
               
145-437
               

               
Cow position:
               
chr1:95765332-95765052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
145-460
               

               
Cow position:
               
chr1:90864543-90864223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 23
               

               
Conread position:
               
145-461
               

               
Cow position:
               
chr1:90423329-90423011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
149, 15
               

               
Conread position:
               
145-469
               

               
Cow position:
               
chr1:56477352-56477671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
216, 25
               

               
Conread position:
               
145-471
               

               
Cow position:
               
chr1:55146558-55146879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 15
               

               
Conread position:
               
145-471
               

               
Cow position:
               
chr1:60707160-60707484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
139, 34
               

               
Conread position:
               
145-474
               

               
Cow position:
               
chr1:82338028-82337696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 24
               

               
Conread position:
               
145-481
               

               
Cow position:
               
chr1:14379773-14379456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
145-500
               

               
Cow position:
               
chr1:81868970-81868619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
145-509
               

               
Cow position:
               
chr1:3962927-3962566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
217, 15
               

               
Conread position:
               
145-510
               

               
Cow position:
               
chr1:75744617-75744983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 15
               

               
Conread position:
               
145-510
               

               
Cow position:
               
chr1:78810793-78811158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 52
               

               
Conread position:
               
145-511
               

               
Cow position:
               
chr1:37322248-37321880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 26
               

               
Conread position:
               
145-512
               

               
Cow position:
               
chr1:54478079-54478450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
216, 25
               

               
Conread position:
               
145-512
               

               
Cow position:
               
chr1:93528447-93528824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
152, 15
               

               
Conread position:
               
145-513
               

               
Cow position:
               
chr1:50931212-50930855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
226, 23
               

               
Conread position:
               
145-516
               

               
Cow position:
               
chr1:29935624-29935261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 16
               

               
Conread position:
               
145-520
               

               
Cow position:
               
chr1:70538360-70538742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 23
               

               
Conread position:
               
145-528
               

               
Cow position:
               
chr1:61884672-61885050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 15
               

               
Conread position:
               
145-531
               

               
Cow position:
               
chr1:78857565-78857187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 16
               

               
Conread position:
               
145-532
               

               
Cow position:
               
chr1:47233718-47233335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 15
               

               
Conread position:
               
145-533
               

               
Cow position:
               
chr1:16767328-16766949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
217, 15
               

               
Conread position:
               
145-622
               

               
Cow position:
               
chr1:21835705-21836169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
347, 15
               

               
Conread position:
               
145-627
               

               
Cow position:
               
chr1:71253798-71253324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 15
               

               
Conread position:
               
145-640
               

               
Cow position:
               
chr1:85162790-85162305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 16
               

               
Conread position:
               
146-525
               

               
Cow position:
               
chr1:95056813-95057181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
278, 25
               

               
Conread position:
               
147-372
               

               
Cow position:
               
chr1:94403975-94404188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
147-471
               

               
Cow position:
               
chr1:24597411-24597734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
173, 13
               

               
Conread position:
               
147-474
               

               
Cow position:
               
chr1:44506727-44507057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 13
               

               
Conread position:
               
148-345
               

               
Cow position:
               
chr1:30504231-30504420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
148-348
               

               
Cow position:
               
chr1:8869904-8869711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
148-522
               

               
Cow position:
               
chr1:43505283-43505662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 12
               

               
Conread position:
               
148-560
               

               
Cow position:
               
chr1:36931919-36932322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
213, 12
               

               
Conread position:
               
149-524
               

               
Cow position:
               
chr1:10632814-10633177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
220, 12
               

               
Conread position:
               
151-392
               

               
Cow position:
               
chr1:102469202-102468971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
216, 18
               

               
Conread position:
               
160-496
               

               
Cow position:
               
chr1:93810209-93810535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
179, 75
               

               
Conread position:
               
163-385
               

               
Cow position:
               
chr1:95327382-95327159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
200, 156
               

               
Conread position:
               
169-466
               

               
Cow position:
               
chr1:43703191-43703485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
171-345
               

               
Cow position:
               
chr1:64160119-64160289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
126, 59
               

               
Conread position:
               
171-366
               

               
Cow position:
               
chr1:33701899-33702088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
116, 72
               

               
Conread position:
               
171-373
               

               
Cow position:
               
chr1:85593551-85593752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
121, 47
               

               
Conread position:
               
171-387
               

               
Cow position:
               
chr1:342366-342151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
118, 83
               

               
Conread position:
               
171-465
               

               
Cow position:
               
chr1:4401926-4402220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
116, 41
               

               
Conread position:
               
171-495
               

               
Cow position:
               
chr1:62291907-62291596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 59
               

               
Conread position:
               
171-539
               

               
Cow position:
               
chr1:86672450-86672070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
171, 231
               

               
Conread position:
               
171-689
               

               
Cow position:
               
chr1:40531330-40530815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
173-372
               

               
Cow position:
               
chr1:51818722-51818916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
114, 63
               

               
Conread position:
               
173-376
               

               
Cow position:
               
chr1:15691118-15691313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
173-396
               

               
Cow position:
               
chr1:20799653-20799883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
51, 143
               

               
Conread position:
               
173-451
               

               
Cow position:
               
chr1:26729508-26729779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
166, 68
               

               
Conread position:
               
173-510
               

               
Cow position:
               
chr1:42138647-42138977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
119, 84
               

               
Conread position:
               
174-345
               

               
Cow position:
               
chr1:19545318-19545150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
174-345
               

               
Cow position:
               
chr1:31806657-31806827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
113, 26
               

               
Conread position:
               
174-350
               

               
Cow position:
               
chr1:14981337-14981167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
174-360
               

               
Cow position:
               
chr1:26201002-26201183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
109, 67
               

               
Conread position:
               
174-360
               

               
Cow position:
               
chr1:100512377-100512563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
114, 73
               

               
Conread position:
               
174-361
               

               
Cow position:
               
chr1:56711840-56711654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
118, 52
               

               
Conread position:
               
174-367
               

               
Cow position:
               
chr1:4293844-4294026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
174-368
               

               
Cow position:
               
chr1:43358233-43358041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
117, 67
               

               
Conread position:
               
174-368
               

               
Cow position:
               
chr1:64189284-64189469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
25, 70
               

               
Conread position:
               
174-371
               

               
Cow position:
               
chr1:84116183-84116371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
116, 45
               

               
Conread position:
               
174-373
               

               
Cow position:
               
chr1:57264205-57264019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
174-375
               

               
Cow position:
               
chr1:25886293-25886099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
174-376
               

               
Cow position:
               
chr1:62919958-62920145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
199, 32
               

               
Conread position:
               
174-377
               

               
Cow position:
               
chr1:45673493-45673691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
113, 34
               

               
Conread position:
               
174-384
               

               
Cow position:
               
chr1:69415936-69415725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
115, 139
               

               
Conread position:
               
174-405
               

               
Cow position:
               
chr1:81277420-81277194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
116, 52
               

               
Conread position:
               
174-418
               

               
Cow position:
               
chr1:31235150-31234901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
174-428
               

               
Cow position:
               
chr1:57635248-57635502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
178, 69
               

               
Conread position:
               
174-432
               

               
Cow position:
               
chr1:87072486-87072730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
245, 73
               

               
Conread position:
               
174-448
               

               
Cow position:
               
chr1:10655259-10655539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
117, 225
               

               
Conread position:
               
174-459
               

               
Cow position:
               
chr1:52488179-52487911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
124, 16
               

               
Conread position:
               
174-464
               

               
Cow position:
               
chr1:79278660-79278373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
188, 29
               

               
Conread position:
               
174-471
               

               
Cow position:
               
chr1:4691374-4691669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
113, 32
               

               
Conread position:
               
174-471
               

               
Cow position:
               
chr1:31348128-31347853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
118, 56
               

               
Conread position:
               
174-505
               

               
Cow position:
               
chr1:80899889-80900233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 261
               

               
Conread position:
               
174-507
               

               
Cow position:
               
chr1:68827124-68826794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
122, 77
               

               
Conread position:
               
174-510
               

               
Cow position:
               
chr1:6077676-6078012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 176
               

               
Conread position:
               
174-512
               

               
Cow position:
               
chr1:3924012-3923677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 35
               

               
Conread position:
               
174-512
               

               
Cow position:
               
chr1:6941247-6941588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
192, 77
               

               
Conread position:
               
174-512
               

               
Cow position:
               
chr1:6958660-6959001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
192, 77
               

               
Conread position:
               
174-512
               

               
Cow position:
               
chr1:69678544-69678202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 139
               

               
Conread position:
               
174-516
               

               
Cow position:
               
chr1:98030696-98031049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 128
               

               
Conread position:
               
174-521
               

               
Cow position:
               
chr1:93043807-93044149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 165
               

               
Conread position:
               
174-522
               

               
Cow position:
               
chr1:43389266-43388919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 62
               

               
Conread position:
               
174-524
               

               
Cow position:
               
chr1:55229766-55230111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
117, 66
               

               
Conread position:
               
174-524
               

               
Cow position:
               
chr1:55705472-55705108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 254
               

               
Conread position:
               
174-528
               

               
Cow position:
               
chr1:7186569-7186927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
59, 217
               

               
Conread position:
               
174-533
               

               
Cow position:
               
chr1:64804326-64803958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
121, 163
               

               
Conread position:
               
174-537
               

               
Cow position:
               
chr1:7971212-7971556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
180, 56
               

               
Conread position:
               
174-621
               

               
Cow position:
               
chr1:52994805-52995253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 125
               

               
Conread position:
               
174-714
               

               
Cow position:
               
chr1:53671968-53671436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 125
               

               
Conread position:
               
175-428
               

               
Cow position:
               
chr1:96472212-96472479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
176-417
               

               
Cow position:
               
chr1:11770510-11770263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
120, 60
               

               
Conread position:
               
177-364
               

               
Cow position:
               
chr1:68995956-68996150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
180-524
               

               
Cow position:
               
chr1:71079169-71078826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 78
               

               
Conread position:
               
181-348
               

               
Cow position:
               
chr1:20806107-20806273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
5, 16
               

               
Conread position:
               
181-348
               

               
Cow position:
               
chr1:77891216-77891048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
5, 16
               

               
Conread position:
               
181-354
               

               
Cow position:
               
chr1:5631285-5631459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
181-354
               

               
Cow position:
               
chr1:57889304-57889478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
5, 16
               

               
Conread position:
               
181-429
               

               
Cow position:
               
chr1:40089740-40089988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
5, 16
               

               
Conread position:
               
181-471
               

               
Cow position:
               
chr1:89497755-89498034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
188, 16
               

               
Conread position:
               
182-466
               

               
Cow position:
               
chr1:75382781-75383053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
183-496
               

               
Cow position:
               
chr1:102784751-102785059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 75
               

               
Conread position:
               
183-533
               

               
Cow position:
               
chr1:51769876-51770234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
104, 27
               

               
Conread position:
               
186-427
               

               
Cow position:
               
chr1:70028371-70028619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
15, 245
               

               
Conread position:
               
188-356
               

               
Cow position:
               
chr1:7449928-7450090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
104, 54
               

               
Conread position:
               
188-367
               

               
Cow position:
               
chr1:81470924-81471103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
188-388
               

               
Cow position:
               
chr1:89082903-89083105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 62
               

               
Conread position:
               
190-357
               

               
Cow position:
               
chr1:32013754-32013917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
102, 72
               

               
Conread position:
               
190-364
               

               
Cow position:
               
chr1:98372426-98372601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
96, 144
               

               
Conread position:
               
190-368
               

               
Cow position:
               
chr1:71295517-71295335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
78, 164
               

               
Conread position:
               
190-372
               

               
Cow position:
               
chr1:32341410-32341234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
190-460
               

               
Cow position:
               
chr1:72103644-72103920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
101, 61
               

               
Conread position:
               
190-497
               

               
Cow position:
               
chr1:100393367-100393056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
164, 131
               

               
Conread position:
               
190-502
               

               
Cow position:
               
chr1:197210-196893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 232
               

               
Conread position:
               
190-504
               

               
Cow position:
               
chr1:4414410-4414095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 40
               

               
Conread position:
               
190-539
               

               
Cow position:
               
chr1:31608103-31607739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
16, 71
               

               
Conread position:
               
192-509
               

               
Cow position:
               
chr1:24542782-24542450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
169, 47
               

               
Conread position:
               
192-535
               

               
Cow position:
               
chr1:90976283-90975937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
107, 44
               

               
Conread position:
               
193-363
               

               
Cow position:
               
chr1:49753731-49753896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
159, 43
               

               
Conread position:
               
193-382
               

               
Cow position:
               
chr1:46839395-46839587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
193-428
               

               
Cow position:
               
chr1:95654915-95654673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
168, 128
               

               
Conread position:
               
193-449
               

               
Cow position:
               
chr1:43340822-43340558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
93, 177
               

               
Conread position:
               
193-460
               

               
Cow position:
               
chr1:26179014-26178741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
177, 102
               

               
Conread position:
               
193-464
               

               
Cow position:
               
chr1:84906267-84905989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
157, 48
               

               
Conread position:
               
193-466
               

               
Cow position:
               
chr1:34771703-34771427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
176, 38
               

               
Conread position:
               
193-469
               

               
Cow position:
               
chr1:15333678-15333970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
105, 78
               

               
Conread position:
               
193-474
               

               
Cow position:
               
chr1:94261348-94261620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
106, 48
               

               
Conread position:
               
193-508
               

               
Cow position:
               
chr1:62036601-62036921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 103
               

               
Conread position:
               
194-367
               

               
Cow position:
               
chr1:74084390-74084224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
102, 12
               

               
Conread position:
               
194-371
               

               
Cow position:
               
chr1:51654212-51654386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
92, 43
               

               
Conread position:
               
194-460
               

               
Cow position:
               
chr1:70094139-70094410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
94, 182
               

               
Conread position:
               
194-474
               

               
Cow position:
               
chr1:98310863-98311156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
87, 239
               

               
Conread position:
               
195-371
               

               
Cow position:
               
chr1:65025059-65025240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
196-353
               

               
Cow position:
               
chr1:677281-677439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
196-415
               

               
Cow position:
               
chr1:70033883-70033662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
196-437
               

               
Cow position:
               
chr1:70796289-70796049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 24
               

               
Conread position:
               
196-533
               

               
Cow position:
               
chr1:5858887-5858535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
92, 54
               

               
Conread position:
               
196-634
               

               
Cow position:
               
chr1:57946083-57945634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
91, 210
               

               
Conread position:
               
196-648
               

               
Cow position:
               
chr1:92607116-92606662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
91, 161
               

               
Conread position:
               
197-364
               

               
Cow position:
               
chr1:89438131-89437970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
136, 46
               

               
Conread position:
               
197-368
               

               
Cow position:
               
chr1:32244600-32244428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
197-371
               

               
Cow position:
               
chr1:54163005-54162832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
113, 24
               

               
Conread position:
               
197-471
               

               
Cow position:
               
chr1:6788485-6788202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 234
               

               
Conread position:
               
197-510
               

               
Cow position:
               
chr1:5135887-5135591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 49
               

               
Conread position:
               
197-539
               

               
Cow position:
               
chr1:43872530-43872170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
165, 268
               

               
Conread position:
               
198-381
               

               
Cow position:
               
chr1:77440197-77440385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
198-388
               

               
Cow position:
               
chr1:82443651-82443462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
88, 43
               

               
Conread position:
               
198-460
               

               
Cow position:
               
chr1:95178757-95179024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
198-496
               

               
Cow position:
               
chr1:96277249-96276945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
126, 29
               

               
Conread position:
               
198-524
               

               
Cow position:
               
chr1:32001515-32001184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
96, 32
               

               
Conread position:
               
199-348
               

               
Cow position:
               
chr1:77883490-77883640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
199-469
               

               
Cow position:
               
chr1:46030546-46030282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
93, 40
               

               
Conread position:
               
199-524
               

               
Cow position:
               
chr1:58754978-58754661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
173, 32
               

               
Conread position:
               
200-376
               

               
Cow position:
               
chr1:102113301-102113125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
200-412
               

               
Cow position:
               
chr1:83594000-83593784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
99, 31
               

               
Conread position:
               
200-531
               

               
Cow position:
               
chr1:83072251-83072581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 30
               

               
Conread position:
               
201-460
               

               
Cow position:
               
chr1:13810457-13810717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
178, 89
               

               
Conread position:
               
201-511
               

               
Cow position:
               
chr1:25734662-25734987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 238
               

               
Conread position:
               
204-460
               

               
Cow position:
               
chr1:19568662-19568920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
204-465
               

               
Cow position:
               
chr1:42398385-42398116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
87, 47
               

               
Conread position:
               
205-510
               

               
Cow position:
               
chr1:63530393-63530679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
87, 31
               

               
Conread position:
               
206-342
               

               
Cow position:
               
chr1:56413706-56413569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
206-373
               

               
Cow position:
               
chr1:93110808-93110644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
107, 48
               

               
Conread position:
               
206-460
               

               
Cow position:
               
chr1:97778808-97779062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
76, 139
               

               
Conread position:
               
206-511
               

               
Cow position:
               
chr1:54156927-54156614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
91, 25
               

               
Conread position:
               
206-530
               

               
Cow position:
               
chr1:61012123-61012452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
156, 84
               

               
Conread position:
               
206-533
               

               
Cow position:
               
chr1:33207061-33206735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
164, 136
               

               
Conread position:
               
206-624
               

               
Cow position:
               
chr1:92369542-92369957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 232
               

               
Conread position:
               
207-442
               

               
Cow position:
               
chr1:24413254-24413501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
118, 222
               

               
Conread position:
               
207-522
               

               
Cow position:
               
chr1:84910816-84910519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
208-373
               

               
Cow position:
               
chr1:74319969-74319804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
79, 93
               

               
Conread position:
               
208-428
               

               
Cow position:
               
chr1:99039537-99039315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
165, 39
               

               
Conread position:
               
208-510
               

               
Cow position:
               
chr1:75933088-75933387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
152, 35
               

               
Conread position:
               
208-516
               

               
Cow position:
               
chr1:27114483-27114776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
288, 40
               

               
Conread position:
               
208-539
               

               
Cow position:
               
chr1:68763866-68763541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
220, 33
               

               
Conread position:
               
208-620
               

               
Cow position:
               
chr1:86578764-86579180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
130, 37
               

               
Conread position:
               
210-357
               

               
Cow position:
               
chr1:75198962-75199102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
210-505
               

               
Cow position:
               
chr1:70434817-70435113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 126
               

               
Conread position:
               
210-513
               

               
Cow position:
               
chr1:5597383-5597087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
240, 29
               

               
Conread position:
               
210-618
               

               
Cow position:
               
chr1:24445811-24445379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
167, 20
               

               
Conread position:
               
212-524
               

               
Cow position:
               
chr1:89388151-89388479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
213-512
               

               
Cow position:
               
chr1:20667921-20667620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
148, 28
               

               
Conread position:
               
216-433
               

               
Cow position:
               
chr1:80631522-80631745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 40
               

               
Conread position:
               
219-376
               

               
Cow position:
               
chr1:51435770-51435612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
146, 71
               

               
Conread position:
               
219-511
               

               
Cow position:
               
chr1:91875084-91874795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 32
               

               
Conread position:
               
220-377
               

               
Cow position:
               
chr1:20544119-20544275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
220-460
               

               
Cow position:
               
chr1:11832940-11832709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
134, 107
               

               
Conread position:
               
221-474
               

               
Cow position:
               
chr1:60281195-60281457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
141, 126
               

               
Conread position:
               
222-504
               

               
Cow position:
               
chr1:12978506-12978797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 215
               

               
Conread position:
               
223-451
               

               
Cow position:
               
chr1:69127336-69127105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
143, 34
               

               
Conread position:
               
223-475
               

               
Cow position:
               
chr1:87211772-87212018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
223-524
               

               
Cow position:
               
chr1:101632508-101632205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
145, 28
               

               
Conread position:
               
223-610
               

               
Cow position:
               
chr1:45553405-45553019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
12, 52
               

               
Conread position:
               
226-528
               

               
Cow position:
               
chr1:93554673-93554975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
66, 98
               

               
Conread position:
               
227-372
               

               
Cow position:
               
chr1:75347451-75347597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
230-367
               

               
Cow position:
               
chr1:87095397-87095259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
62, 118
               

               
Conread position:
               
230-496
               

               
Cow position:
               
chr1:24581417-24581682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
130, 87
               

               
Conread position:
               
230-513
               

               
Cow position:
               
chr1:86110898-86110621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 188
               

               
Conread position:
               
231-366
               

               
Cow position:
               
chr1:100745441-100745578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
231-368
               

               
Cow position:
               
chr1:31960059-31960197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
231-531
               

               
Cow position:
               
chr1:7752218-7752521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
65, 168
               

               
Conread position:
               
231-533
               

               
Cow position:
               
chr1:7748052-7748357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
65, 168
               

               
Conread position:
               
231-561
               

               
Cow position:
               
chr1:27380309-27380630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
267, 97
               

               
Conread position:
               
232-447
               

               
Cow position:
               
chr1:89508392-89508606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
133, 187
               

               
Conread position:
               
232-448
               

               
Cow position:
               
chr1:427083-426872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 97
               

               
Conread position:
               
232-510
               

               
Cow position:
               
chr1:51417612-51417888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
130, 31
               

               
Conread position:
               
232-522
               

               
Cow position:
               
chr1:38753753-38754053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
64, 256
               

               
Conread position:
               
232-526
               

               
Cow position:
               
chr1:101280880-101280601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
263, 112
               

               
Conread position:
               
232-548
               

               
Cow position:
               
chr1:24778148-24777838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
129, 11
               

               
Conread position:
               
233-496
               

               
Cow position:
               
chr1:77683194-77683458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
142, 190
               

               
Conread position:
               
233-510
               

               
Cow position:
               
chr1:96081320-96081600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 89
               

               
Conread position:
               
234-372
               

               
Cow position:
               
chr1:95922541-95922401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
234-523
               

               
Cow position:
               
chr1:85647944-85647648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 194
               

               
Conread position:
               
235-466
               

               
Cow position:
               
chr1:70026505-70026269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
122, 195
               

               
Conread position:
               
236-376
               

               
Cow position:
               
chr1:51684643-51684780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 21
               

               
Conread position:
               
236-524
               

               
Cow position:
               
chr1:78096776-78097062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
82, 70
               

               
Conread position:
               
236-541
               

               
Cow position:
               
chr1:97938809-97939105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
236-610
               

               
Cow position:
               
chr1:80311310-80311649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
341, 91
               

               
Conread position:
               
237-474
               

               
Cow position:
               
chr1:101946866-101946630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
141, 26
               

               
Conread position:
               
237-532
               

               
Cow position:
               
chr1:88913158-88913458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
21, 192
               

               
Conread position:
               
237-533
               

               
Cow position:
               
chr1:42175565-42175867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 159
               

               
Conread position:
               
239-368
               

               
Cow position:
               
chr1:84235490-84235360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
239-527
               

               
Cow position:
               
chr1:57420885-57420598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
53, 186
               

               
Conread position:
               
240-367
               

               
Cow position:
               
chr1:85826190-85826314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
240-399
               

               
Cow position:
               
chr1:63314672-63314831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
73, 144
               

               
Conread position:
               
240-623
               

               
Cow position:
               
chr1:65909370-65909749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 140
               

               
Conread position:
               
241-360
               

               
Cow position:
               
chr1:4385207-4385325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
72, 34
               

               
Conread position:
               
241-460
               

               
Cow position:
               
chr1:102289256-102289038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
44, 109
               

               
Conread position:
               
241-474
               

               
Cow position:
               
chr1:42545939-42545695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
51, 16
               

               
Conread position:
               
241-511
               

               
Cow position:
               
chr1:22192608-22192891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 193
               

               
Conread position:
               
241-528
               

               
Cow position:
               
chr1:33409783-33409487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
50, 160
               

               
Conread position:
               
243-513
               

               
Cow position:
               
chr1:87197674-87197944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 97
               

               
Conread position:
               
243-526
               

               
Cow position:
               
chr1:86682716-86682429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
68, 195
               

               
Conread position:
               
243-534
               

               
Cow position:
               
chr1:41115868-41115573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
118, 185
               

               
Conread position:
               
245-372
               

               
Cow position:
               
chr1:35554753-35554882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
246-501
               

               
Cow position:
               
chr1:31272591-31272330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
120, 188
               

               
Conread position:
               
246-539
               

               
Cow position:
               
chr1:70312955-70312642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
124, 106
               

               
Conread position:
               
249-502
               

               
Cow position:
               
chr1:91023615-91023354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
117, 170
               

               
Conread position:
               
249-509
               

               
Cow position:
               
chr1:100761932-100762196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
112, 35
               

               
Conread position:
               
249-567
               

               
Cow position:
               
chr1:23512802-23512483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
82, 120
               

               
Conread position:
               
251-370
               

               
Cow position:
               
chr1:50907539-50907422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
251-471
               

               
Cow position:
               
chr1:29481772-29481550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 115
               

               
Conread position:
               
252-502
               

               
Cow position:
               
chr1:8129111-8128856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
113, 59
               

               
Conread position:
               
252-512
               

               
Cow position:
               
chr1:24534398-24534134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
109, 160
               

               
Conread position:
               
253-466
               

               
Cow position:
               
chr1:87440325-87440543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
111, 75
               

               
Conread position:
               
255-513
               

               
Cow position:
               
chr1:90595696-90595447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
30, 116
               

               
Conread position:
               
257-511
               

               
Cow position:
               
chr1:89230367-89230109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
110, 51
               

               
Conread position:
               
258-449
               

               
Cow position:
               
chr1:93228387-93228584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 90
               

               
Conread position:
               
258-471
               

               
Cow position:
               
chr1:30047732-30047522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
94, 157
               

               
Conread position:
               
258-531
               

               
Cow position:
               
chr1:89448759-89449039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 173
               

               
Conread position:
               
259-504
               

               
Cow position:
               
chr1:64572376-64572630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
103, 178
               

               
Conread position:
               
260-513
               

               
Cow position:
               
chr1:41047436-41047178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
107, 41
               

               
Conread position:
               
260-590
               

               
Cow position:
               
chr1:18780470-18780131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 37
               

               
Conread position:
               
260-622
               

               
Cow position:
               
chr1:8360034-8359677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
179, 87
               

               
Conread position:
               
261-500
               

               
Cow position:
               
chr1:64302383-64302132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 171
               

               
Conread position:
               
262-471
               

               
Cow position:
               
chr1:92433870-92434081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
110, 14
               

               
Conread position:
               
262-611
               

               
Cow position:
               
chr1:5023890-5023543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
70, 116
               

               
Conread position:
               
263-510
               

               
Cow position:
               
chr1:78838665-78838914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
98, 70
               

               
Conread position:
               
264-502
               

               
Cow position:
               
chr1:17196761-17196514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
103, 11
               

               
Conread position:
               
265-516
               

               
Cow position:
               
chr1:79640421-79640161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
105, 24
               

               
Conread position:
               
271-464
               

               
Cow position:
               
chr1:91370134-91369935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
93, 141
               

               
Conread position:
               
274-524
               

               
Cow position:
               
chr1:20104146-20104402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
90, 150
               

               
Conread position:
               
277-537
               

               
Cow position:
               
chr1:9437428-9437142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
282-616
               

               
Cow position:
               
chr1:98511813-98512135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
18, 141
               

               
Conread position:
               
283-503
               

               
Cow position:
               
chr1:81582008-81582228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
9, 86
               

               
Conread position:
               
284-512
               

               
Cow position:
               
chr1:78794337-78794108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
84, 138
               

               
Conread position:
               
284-524
               

               
Cow position:
               
chr1:41138244-41138012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
209, 85
               

               
Conread position:
               
284-530
               

               
Cow position:
               
chr1:7023008-7023262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
85, 59
               

               
Conread position:
               
284-541
               

               
Cow position:
               
chr1:23999033-23998784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
82, 31
               

               
Conread position:
               
284-618
               

               
Cow position:
               
chr1:68845269-68844956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
285-500
               

               
Cow position:
               
chr1:61543029-61542808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 156
               

               
Conread position:
               
285-502
               

               
Cow position:
               
chr1:65028418-65028645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 143
               

               
Conread position:
               
286-622
               

               
Cow position:
               
chr1:81580066-81580413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
82, 9
               

               
Conread position:
               
288-559
               

               
Cow position:
               
chr1:6972421-6972695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
80, 137
               

               
Conread position:
               
290-512
               

               
Cow position:
               
chr1:48769696-48769926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 58
               

               
Conread position:
               
290-515
               

               
Cow position:
               
chr1:19227161-19226933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
50, 131
               

               
Conread position:
               
297-622
               

               
Cow position:
               
chr1:37886909-37886583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
68, 136
               

               
Conread position:
               
297-635
               

               
Cow position:
               
chr1:77232667-77232352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
78, 22
               

               
Conread position:
               
299-513
               

               
Cow position:
               
chr1:82513453-82513232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
66, 132
               

               
Conread position:
               
303-524
               

               
Cow position:
               
chr1:90904847-90904621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 123
               

               
Conread position:
               
306-520
               

               
Cow position:
               
chr1:4581417-4581200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 126
               

               
Conread position:
               
306-622
               

               
Cow position:
               
chr1:50991844-50992163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
55, 44
               

               
Conread position:
               
311-667
               

               
Cow position:
               
chr1:95153134-95153496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 105
               

               
Conread position:
               
314-526
               

               
Cow position:
               
chr1:80841570-80841783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 106
               

               
Conread position:
               
318-504
               

               
Cow position:
               
chr1:52467223-52467418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
58, 121
               

               
Conread position:
               
320-516
               

               
Cow position:
               
chr1:53452466-53452661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 98
               

               
Conread position:
               
320-616
               

               
Cow position:
               
chr1:68672676-68672379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
41, 85
               

               
Conread position:
               
330-611
               

               
Cow position:
               
chr1:31855302-31855036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
167, 20
               

               
Conread position:
               
331-524
               

               
Cow position:
               
chr1:54267999-54267804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
34, 26
               

               
Conread position:
               
335-513
               

               
Cow position:
               
chr1:80584369-80584553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
364-522
               

               
Cow position:
               
chr1:41027051-41027208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
131, 53
               

               
Conread position:
               
364-533
               

               
Cow position:
               
chr1:79003952-79004115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
131, 54
               

               
Conread position:
               
370-553
               

               
Cow position:
               
chr1:40935785-40935603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
148, 48
               

               
Conread position:
               
372-529
               

               
Cow position:
               
chr1:45315652-45315496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
123, 46
               

               
Conread position:
               
382-555
               

               
Cow position:
               
chr1:97750625-97750457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
113, 38
               

               
Conread position:
               
385-612
               

               
Cow position:
               
chr1:83783933-83783705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
113, 35
               

               
Conread position:
               
388-622
               

               
Cow position:
               
chr1:44269092-44269312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
98, 6
               

               
Conread position:
               
392-681
               

               
Cow position:
               
chr1:53640719-53641018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
106, 46
               
Show alignments to all cow chromosomes.