Non-Coding RNA Search

Cow genome map


           Conread name:
           Mixn-0015i14
        

               Conread position:
               1-530
               

               Cow position:
               chrX:47343921-47344458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 23
               

               Conread position:
               2-348
               

               Cow position:
               chrX:3464446-3464101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               244
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               141, 18
               

               Conread position:
               2-348
               

               Cow position:
               chrX:21686250-21686591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 18
               

               Conread position:
               2-348
               

               Cow position:
               chrX:37816218-37816565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 18
               

               Conread position:
               2-367
               

               Cow position:
               chrX:36373174-36373556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               260
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               141, 18
               

               Conread position:
               2-390
               

               Cow position:
               chrX:13030011-13029639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               253
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               251, 18
               

               Conread position:
               2-390
               

               Cow position:
               chrX:45903808-45904197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 18
               

               Conread position:
               2-415
               

               Cow position:
               chrX:4343379-4343793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 18
               

               Conread position:
               2-415
               

               Cow position:
               chrX:10428170-10428583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 18
               

               Conread position:
               2-415
               

               Cow position:
               chrX:14134105-14134519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               272
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               141, 18
               

               Conread position:
               2-415
               

               Cow position:
               chrX:16279279-16279693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               275
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               141, 16
               

               Conread position:
               2-415
               

               Cow position:
               chrX:19196888-19196474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               275
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               124, 18
               

               Conread position:
               2-415
               

               Cow position:
               chrX:22077957-22078371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 18
               

               Conread position:
               2-415
               

               Cow position:
               chrX:22772285-22772699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               276
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               141, 18
               

               Conread position:
               2-415
               

               Cow position:
               chrX:35533481-35533895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 18
               

               Conread position:
               2-430
               

               Cow position:
               chrX:10915668-10916104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               290
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               141, 18
               

               Conread position:
               2-435
               

               Cow position:
               chrX:14122121-14121688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               289
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               102, 18
               

               Conread position:
               2-472
               

               Cow position:
               chrX:44737361-44736897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               317
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               143, 22
               

               Conread position:
               2-518
               

               Cow position:
               chrX:14884332-14883805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 18
               

               Conread position:
               3-340
               

               Cow position:
               chrX:4123467-4123802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 27
               

               Conread position:
               3-351
               

               Cow position:
               chrX:12249432-12249777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 17
               

               Conread position:
               3-354
               

               Cow position:
               chrX:6655635-6655284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 17
               

               Conread position:
               3-354
               

               Cow position:
               chrX:25459006-25458654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 17
               

               Conread position:
               3-376
               

               Cow position:
               chrX:19019461-19019105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               285, 17
               

               Conread position:
               3-388
               

               Cow position:
               chrX:15139918-15139534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               111, 101
               

               Conread position:
               3-388
               

               Cow position:
               chrX:25568748-25568385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               257
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               284, 17
               

               Conread position:
               3-390
               

               Cow position:
               chrX:16289931-16289543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 17
               

               Conread position:
               3-395
               

               Cow position:
               chrX:3405725-3405343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               271
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               44, 17
               

               Conread position:
               3-395
               

               Cow position:
               chrX:42462117-42461722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 17
               

               Conread position:
               3-428
               

               Cow position:
               chrX:13785747-13785299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 17
               

               Conread position:
               3-429
               

               Cow position:
               chrX:323546-323953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               291
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               183, 17
               

               Conread position:
               3-429
               

               Cow position:
               chrX:23122015-23122448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 17
               

               Conread position:
               3-433
               

               Cow position:
               chrX:41103419-41103845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 15
               

               Conread position:
               3-464
               

               Cow position:
               chrX:34401629-34402095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 17
               

               Conread position:
               3-469
               

               Cow position:
               chrX:34554366-34554823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 17
               

               Conread position:
               3-510
               

               Cow position:
               chrX:17794626-17795123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               332, 17
               

               Conread position:
               3-510
               

               Cow position:
               chrX:45430388-45429882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 171
               

               Conread position:
               3-512
               

               Cow position:
               chrX:34532162-34532663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 17
               

               Conread position:
               3-513
               

               Cow position:
               chrX:41192320-41192849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               542
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 15
               

               Conread position:
               3-528
               

               Cow position:
               chrX:31489143-31489680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 17
               

               Conread position:
               3-530
               

               Cow position:
               chrX:10866236-10865711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 13
               

               Conread position:
               3-531
               

               Cow position:
               chrX:14599167-14599695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 17
               

               Conread position:
               3-619
               

               Cow position:
               chrX:40269107-40269732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               644
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 17
               

               Conread position:
               4-466
               

               Cow position:
               chrX:26441148-26440688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 12
               

               Conread position:
               4-526
               

               Cow position:
               chrX:11655710-11656239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 16
               

               Conread position:
               5-354
               

               Cow position:
               chrX:1947088-1946733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               240
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               147, 12
               

               Conread position:
               5-365
               

               Cow position:
               chrX:28105559-28105909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               254
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               141, 15
               

               Conread position:
               5-368
               

               Cow position:
               chrX:1055760-1055402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 25
               

               Conread position:
               5-371
               

               Cow position:
               chrX:42994247-42994608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 15
               

               Conread position:
               5-372
               

               Cow position:
               chrX:21665958-21665597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 15
               

               Conread position:
               5-373
               

               Cow position:
               chrX:41743546-41743909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 13
               

               Conread position:
               5-377
               

               Cow position:
               chrX:20582663-20583021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 18
               

               Conread position:
               5-393
               

               Cow position:
               chrX:32747289-32747703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 161
               

               Conread position:
               5-411
               

               Cow position:
               chrX:42086495-42086890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               5-466
               

               Cow position:
               chrX:45113269-45113716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               287, 15
               

               Conread position:
               5-502
               

               Cow position:
               chrX:11082981-11082488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 15
               

               Conread position:
               5-505
               

               Cow position:
               chrX:35223935-35224432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 15
               

               Conread position:
               5-513
               

               Cow position:
               chrX:24424759-24424256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 15
               

               Conread position:
               5-524
               

               Cow position:
               chrX:34376587-34377098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 15
               

               Conread position:
               5-524
               

               Cow position:
               chrX:37072039-37072545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 15
               

               Conread position:
               5-527
               

               Cow position:
               chrX:161061-161569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 15
               

               Conread position:
               5-531
               

               Cow position:
               chrX:12309755-12309223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 13
               

               Conread position:
               5-531
               

               Cow position:
               chrX:13648151-13647622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 15
               

               Conread position:
               5-535
               

               Cow position:
               chrX:42247542-42247019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               364, 12
               

               Conread position:
               5-545
               

               Cow position:
               chrX:5871946-5872494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               560
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 15
               

               Conread position:
               5-560
               

               Cow position:
               chrX:42171666-42171105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 11
               

               Conread position:
               5-562
               

               Cow position:
               chrX:46532887-46532302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               593
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 15
               

               Conread position:
               5-567
               

               Cow position:
               chrX:35388274-35387727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               571
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 19
               

               Conread position:
               5-631
               

               Cow position:
               chrX:40481238-40480610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               646
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 15
               

               Conread position:
               5-645
               

               Cow position:
               chrX:878737-878100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               659
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 25
               

               Conread position:
               6-376
               

               Cow position:
               chrX:5423432-5423061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               137, 14
               

               Conread position:
               6-432
               

               Cow position:
               chrX:39071317-39071749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               290
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               141, 14
               

               Conread position:
               7-560
               

               Cow position:
               chrX:11718143-11717591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 13
               

               Conread position:
               8-348
               

               Cow position:
               chrX:38967287-38967620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 12
               

               Conread position:
               8-361
               

               Cow position:
               chrX:13868333-13868688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 22
               

               Conread position:
               8-367
               

               Cow position:
               chrX:12115677-12116037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 12
               

               Conread position:
               8-368
               

               Cow position:
               chrX:17497732-17498075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 12
               

               Conread position:
               8-377
               

               Cow position:
               chrX:27442916-27442552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 12
               

               Conread position:
               8-377
               

               Cow position:
               chrX:34192317-34192672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 12
               

               Conread position:
               8-417
               

               Cow position:
               chrX:8899661-8900077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 12
               

               Conread position:
               8-460
               

               Cow position:
               chrX:21592922-21593372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 22
               

               Conread position:
               8-460
               

               Cow position:
               chrX:34663224-34662755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 12
               

               Conread position:
               8-471
               

               Cow position:
               chrX:34502559-34503022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 12
               

               Conread position:
               8-471
               

               Cow position:
               chrX:40827111-40826649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               322
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               144, 22
               

               Conread position:
               8-481
               

               Cow position:
               chrX:7571539-7572017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 12
               

               Conread position:
               8-505
               

               Cow position:
               chrX:6543892-6544391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 12
               

               Conread position:
               8-510
               

               Cow position:
               chrX:34564936-34565425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 12
               

               Conread position:
               8-512
               

               Cow position:
               chrX:4044222-4043723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 12
               

               Conread position:
               8-512
               

               Cow position:
               chrX:15007515-15007006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 12
               

               Conread position:
               8-515
               

               Cow position:
               chrX:28632841-28632338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               333
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               356, 12
               

               Conread position:
               8-524
               

               Cow position:
               chrX:6413682-6414197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 12
               

               Conread position:
               8-531
               

               Cow position:
               chrX:4996248-4996750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 107
               

               Conread position:
               8-531
               

               Cow position:
               chrX:31250028-31250551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 12
               

               Conread position:
               8-531
               

               Cow position:
               chrX:41879294-41878771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 12
               

               Conread position:
               8-537
               

               Cow position:
               chrX:10831876-10831319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 12
               

               Conread position:
               8-560
               

               Cow position:
               chrX:7718493-7719036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               559
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 15
               

               Conread position:
               8-622
               

               Cow position:
               chrX:37232047-37232669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               631
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 12
               

               Conread position:
               8-678
               

               Cow position:
               chrX:27705229-27705889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               694
               

               Alignm identity:
               452
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 16
               

               Conread position:
               9-336
               

               Cow position:
               chrX:7806014-7806342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 100
               

               Conread position:
               9-368
               

               Cow position:
               chrX:25419524-25419165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 156
               

               Conread position:
               9-374
               

               Cow position:
               chrX:24200837-24201184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               255
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               119, 8
               

               Conread position:
               9-526
               

               Cow position:
               chrX:9252537-9252004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               542
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 11
               

               Conread position:
               9-641
               

               Cow position:
               chrX:44731237-44731862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               10-376
               

               Cow position:
               chrX:11806378-11806013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 10
               

               Conread position:
               10-513
               

               Cow position:
               chrX:33855602-33855075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 13
               

               Conread position:
               11-334
               

               Cow position:
               chrX:36840506-36840834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               224
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               136, 6
               

               Conread position:
               11-348
               

               Cow position:
               chrX:20038579-20038243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               241
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               132, 12
               

               Conread position:
               11-371
               

               Cow position:
               chrX:35609623-35609984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 145
               

               Conread position:
               11-372
               

               Cow position:
               chrX:28111137-28111503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               121, 6
               

               Conread position:
               11-428
               

               Cow position:
               chrX:2146957-2147398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               296
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               122, 6
               

               Conread position:
               11-443
               

               Cow position:
               chrX:28847237-28846819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 9
               

               Conread position:
               11-465
               

               Cow position:
               chrX:3654246-3654704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 100
               

               Conread position:
               11-469
               

               Cow position:
               chrX:630654-630210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 6
               

               Conread position:
               11-474
               

               Cow position:
               chrX:20801416-20801874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               316
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               68, 6
               

               Conread position:
               11-474
               

               Cow position:
               chrX:30543643-30543179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 9
               

               Conread position:
               11-474
               

               Cow position:
               chrX:39125959-39126431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               321
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               171, 9
               

               Conread position:
               11-496
               

               Cow position:
               chrX:917731-917241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 14
               

               Conread position:
               11-500
               

               Cow position:
               chrX:15147542-15147065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 9
               

               Conread position:
               11-509
               

               Cow position:
               chrX:9651406-9650885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 9
               

               Conread position:
               11-510
               

               Cow position:
               chrX:29289215-29289718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 9
               

               Conread position:
               11-513
               

               Cow position:
               chrX:38963750-38964253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 9
               

               Conread position:
               11-538
               

               Cow position:
               chrX:5017767-5017255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               408, 20
               

               Conread position:
               12-376
               

               Cow position:
               chrX:2786907-2786558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               342, 134
               

               Conread position:
               12-474
               

               Cow position:
               chrX:1616411-1615938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 6
               

               Conread position:
               12-474
               

               Cow position:
               chrX:31260991-31260509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 5
               

               Conread position:
               12-496
               

               Cow position:
               chrX:38094885-38094393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 5
               

               Conread position:
               12-512
               

               Cow position:
               chrX:41526879-41526385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 63
               

               Conread position:
               12-522
               

               Cow position:
               chrX:35268532-35269015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 32
               

               Conread position:
               12-533
               

               Cow position:
               chrX:4633211-4632692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 8
               

               Conread position:
               19-335
               

               Cow position:
               chrX:35937423-35937121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               222
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               133, 100
               

               Conread position:
               19-354
               

               Cow position:
               chrX:45932650-45932987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               234
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               125, 154
               

               Conread position:
               19-417
               

               Cow position:
               chrX:40452567-40452168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 144
               

               Conread position:
               19-475
               

               Cow position:
               chrX:13912725-13913181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 147
               

               Conread position:
               19-511
               

               Cow position:
               chrX:28866343-28865863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 140
               

               Conread position:
               19-531
               

               Cow position:
               chrX:20340245-20339731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 157
               

               Conread position:
               19-532
               

               Cow position:
               chrX:13177811-13177312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 96
               

               Conread position:
               19-617
               

               Cow position:
               chrX:18695275-18694700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               610
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 230
               

               Conread position:
               20-348
               

               Cow position:
               chrX:26275786-26276116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 178
               

               Conread position:
               20-348
               

               Cow position:
               chrX:28752693-28752362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               125, 143
               

               Conread position:
               20-389
               

               Cow position:
               chrX:20945215-20945577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 135
               

               Conread position:
               20-390
               

               Cow position:
               chrX:14598492-14598864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               253
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               123, 169
               

               Conread position:
               20-415
               

               Cow position:
               chrX:16465947-16466345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 146
               

               Conread position:
               20-415
               

               Cow position:
               chrX:35612897-35612501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               266
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               120, 152
               

               Conread position:
               20-425
               

               Cow position:
               chrX:6372828-6373234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 173
               

               Conread position:
               20-426
               

               Cow position:
               chrX:40180223-40179820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               270
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               132, 109
               

               Conread position:
               20-429
               

               Cow position:
               chrX:2160412-2160822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               265
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               132, 178
               

               Conread position:
               22-465
               

               Cow position:
               chrX:42492881-42492427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 241
               

               Conread position:
               22-618
               

               Cow position:
               chrX:7695413-7695986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               615
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 62
               

               Conread position:
               23-460
               

               Cow position:
               chrX:45089087-45089537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               307
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               29, 34
               

               Conread position:
               23-510
               

               Cow position:
               chrX:31729108-31729582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               349, 112
               

               Conread position:
               23-511
               

               Cow position:
               chrX:42470287-42469798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 150
               

               Conread position:
               23-561
               

               Cow position:
               chrX:8796901-8797442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 61
               

               Conread position:
               25-373
               

               Cow position:
               chrX:25337829-25338182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 142
               

               Conread position:
               25-435
               

               Cow position:
               chrX:17055221-17055633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               272
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               118, 164
               

               Conread position:
               25-511
               

               Cow position:
               chrX:44396672-44397150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 136
               

               Conread position:
               25-522
               

               Cow position:
               chrX:31436132-31436628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 141
               

               Conread position:
               26-367
               

               Cow position:
               chrX:38439127-38439469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 45
               

               Conread position:
               26-384
               

               Cow position:
               chrX:47967253-47967607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               256
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               110, 146
               

               Conread position:
               26-465
               

               Cow position:
               chrX:28134002-28134434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 116
               

               Conread position:
               26-500
               

               Cow position:
               chrX:41122725-41123191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 140
               

               Conread position:
               26-524
               

               Cow position:
               chrX:38218371-38218872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 137
               

               Conread position:
               26-533
               

               Cow position:
               chrX:24288260-24287771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               344
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               237, 99
               

               Conread position:
               26-560
               

               Cow position:
               chrX:27516186-27516710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               542
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 106
               

               Conread position:
               26-630
               

               Cow position:
               chrX:151551-152164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               624
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 132
               

               Conread position:
               27-390
               

               Cow position:
               chrX:15577989-15577622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               250
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               13, 164
               

               Conread position:
               27-415
               

               Cow position:
               chrX:5123707-5123317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               260
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               116, 162
               

               Conread position:
               28-381
               

               Cow position:
               chrX:18999553-18999897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               259, 113
               

               Conread position:
               28-437
               

               Cow position:
               chrX:7054080-7053672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 101
               

               Conread position:
               29-496
               

               Cow position:
               chrX:47054860-47054398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               318
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               261, 91
               

               Conread position:
               29-504
               

               Cow position:
               chrX:47481456-47481932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               314
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               114, 58
               

               Conread position:
               34-343
               

               Cow position:
               chrX:48287779-48287482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               118, 138
               

               Conread position:
               37-377
               

               Cow position:
               chrX:43527166-43527510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 206
               

               Conread position:
               37-474
               

               Cow position:
               chrX:26626021-26625566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 403
               

               Conread position:
               37-627
               

               Cow position:
               chrX:40558012-40557426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               612
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 136
               

               Conread position:
               38-512
               

               Cow position:
               chrX:38007103-38006627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 135
               

               Conread position:
               39-373
               

               Cow position:
               chrX:6234768-6234455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               240
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               253, 34
               

               Conread position:
               39-425
               

               Cow position:
               chrX:30686930-30686531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               270
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               104, 150
               

               Conread position:
               41-474
               

               Cow position:
               chrX:7645925-7646356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 126
               

               Conread position:
               44-481
               

               Cow position:
               chrX:7508798-7509251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 18
               

               Conread position:
               45-377
               

               Cow position:
               chrX:35681007-35681342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               253
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               96, 130
               

               Conread position:
               47-533
               

               Cow position:
               chrX:26492676-26493169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 368
               

               Conread position:
               54-418
               

               Cow position:
               chrX:34990722-34991087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 111
               

               Conread position:
               54-447
               

               Cow position:
               chrX:5638487-5638091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 62
               

               Conread position:
               54-635
               

               Cow position:
               chrX:36311280-36311835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               591
               

               Alignm identity:
               374
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               98, 107
               

               Conread position:
               55-380
               

               Cow position:
               chrX:12826429-12826749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               97, 251
               

               Conread position:
               55-531
               

               Cow position:
               chrX:33466299-33466786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 100
               

               Conread position:
               55-579
               

               Cow position:
               chrX:33639650-33640188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 35
               

               Conread position:
               56-373
               

               Cow position:
               chrX:30162680-30162994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 116
               

               Conread position:
               57-433
               

               Cow position:
               chrX:28845528-28845884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               271
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               89, 111
               

               Conread position:
               58-357
               

               Cow position:
               chrX:4869228-4869529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               216
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               85, 107
               

               Conread position:
               58-461
               

               Cow position:
               chrX:30133639-30133226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 108
               

               Conread position:
               61-670
               

               Cow position:
               chrX:7350990-7351587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 109
               

               Conread position:
               62-415
               

               Cow position:
               chrX:21011633-21011277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               64, 58
               

               Conread position:
               63-428
               

               Cow position:
               chrX:19188626-19188992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 110
               

               Conread position:
               66-327
               

               Cow position:
               chrX:23061147-23061397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               156, 0
               

               Conread position:
               66-367
               

               Cow position:
               chrX:14924693-14924992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 107
               

               Conread position:
               67-376
               

               Cow position:
               chrX:11314084-11313783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               80, 88
               

               Conread position:
               68-508
               

               Cow position:
               chrX:45414605-45414164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 105
               

               Conread position:
               73-359
               

               Cow position:
               chrX:33020186-33020467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 93
               

               Conread position:
               74-360
               

               Cow position:
               chrX:35273045-35273339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 249
               

               Conread position:
               74-376
               

               Cow position:
               chrX:44835115-44834809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               68, 99
               

               Conread position:
               74-460
               

               Cow position:
               chrX:1176273-1175892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               263
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               276, 67
               

               Conread position:
               75-420
               

               Cow position:
               chrX:19015144-19015490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 90
               

               Conread position:
               75-511
               

               Cow position:
               chrX:41238661-41238212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 80
               

               Conread position:
               82-461
               

               Cow position:
               chrX:158061-157685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               5, 80
               

               Conread position:
               83-496
               

               Cow position:
               chrX:4269357-4268938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               284
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               69, 33
               

               Conread position:
               84-528
               

               Cow position:
               chrX:22482978-22482530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 89
               

               Conread position:
               85-537
               

               Cow position:
               chrX:31294828-31294407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 78
               

               Conread position:
               86-384
               

               Cow position:
               chrX:29066154-29066455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               57, 103
               

               Conread position:
               86-460
               

               Cow position:
               chrX:48195328-48194944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               265
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               59, 87
               

               Conread position:
               87-348
               

               Cow position:
               chrX:45939732-45939477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               60, 99
               

               Conread position:
               87-460
               

               Cow position:
               chrX:46723027-46722643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 86
               

               Conread position:
               87-524
               

               Cow position:
               chrX:46033004-46032573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 82
               

               Conread position:
               90-460
               

               Cow position:
               chrX:2467597-2467975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 82
               

               Conread position:
               92-418
               

               Cow position:
               chrX:42874697-42875034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 74
               

               Conread position:
               92-430
               

               Cow position:
               chrX:37836308-37836649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               250
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               51, 28
               

               Conread position:
               92-512
               

               Cow position:
               chrX:23497946-23497548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               294
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               8, 75
               

               Conread position:
               93-348
               

               Cow position:
               chrX:9997611-9997363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 21
               

               Conread position:
               93-373
               

               Cow position:
               chrX:40647698-40647983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               216
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               42, 73
               

               Conread position:
               93-376
               

               Cow position:
               chrX:8730799-8731087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               209
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               54, 62
               

               Conread position:
               93-460
               

               Cow position:
               chrX:15814824-15815175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               33, 14
               

               Conread position:
               95-415
               

               Cow position:
               chrX:26709326-26709648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               48, 94
               

               Conread position:
               95-536
               

               Cow position:
               chrX:8925428-8925866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 77
               

               Conread position:
               96-365
               

               Cow position:
               chrX:12017998-12018281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               51, 59
               

               Conread position:
               96-528
               

               Cow position:
               chrX:30921908-30922331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               289
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               45, 70
               

               Conread position:
               98-366
               

               Cow position:
               chrX:47191670-47191421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               42, 76
               

               Conread position:
               98-461
               

               Cow position:
               chrX:7496974-7497335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               261
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               59, 13
               

               Conread position:
               100-509
               

               Cow position:
               chrX:9635448-9635052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 26
               

               Conread position:
               105-460
               

               Cow position:
               chrX:45404102-45403734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               254
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               47, 330
               

               Conread position:
               106-415
               

               Cow position:
               chrX:2580132-2580443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               37, 73
               

               Conread position:
               106-460
               

               Cow position:
               chrX:40183617-40183263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 240
               

               Conread position:
               106-622
               

               Cow position:
               chrX:17725711-17726242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               546
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 59
               

               Conread position:
               107-384
               

               Cow position:
               chrX:488224-488500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               40, 52
               

               Conread position:
               109-376
               

               Cow position:
               chrX:24366093-24365825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               138, 42
               

               Conread position:
               111-348
               

               Cow position:
               chrX:2933460-2933696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               36, 74
               

               Conread position:
               116-364
               

               Cow position:
               chrX:27509277-27509035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               27, 57
               

               Conread position:
               116-387
               

               Cow position:
               chrX:32020379-32020110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               203
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               27, 57
               

               Conread position:
               116-512
               

               Cow position:
               chrX:20151593-20152000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               279
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               36, 115
               

               Conread position:
               120-469
               

               Cow position:
               chrX:17541711-17542063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               251
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               23, 46
               

               Conread position:
               120-496
               

               Cow position:
               chrX:46073066-46072690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               267
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               248, 20
               

               Conread position:
               124-521
               

               Cow position:
               chrX:7721740-7722143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 44
               

               Conread position:
               126-432
               

               Cow position:
               chrX:9572276-9572582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               17, 63
               

               Conread position:
               126-432
               

               Cow position:
               chrX:9976189-9976495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               17, 63
               

               Conread position:
               126-513
               

               Cow position:
               chrX:27432166-27431773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 39
               

               Conread position:
               127-343
               

               Cow position:
               chrX:16541918-16541704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               5, 35
               

               Conread position:
               127-415
               

               Cow position:
               chrX:45425071-45424781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               17, 62
               

               Conread position:
               127-427
               

               Cow position:
               chrX:41167206-41166902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               14, 44
               

               Conread position:
               129-516
               

               Cow position:
               chrX:20677121-20677513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               259
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               94, 66
               

               Conread position:
               130-372
               

               Cow position:
               chrX:678811-678576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               17, 25
               

               Conread position:
               131-466
               

               Cow position:
               chrX:17662835-17662501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 30
               

               Conread position:
               132-366
               

               Cow position:
               chrX:29509679-29509451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               159, 13
               

               Conread position:
               132-366
               

               Cow position:
               chrX:40788968-40789199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               145, 28
               

               Conread position:
               132-533
               

               Cow position:
               chrX:21672314-21672724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 29
               

               Conread position:
               132-608
               

               Cow position:
               chrX:6690483-6690030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               331
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               167, 7
               

               Conread position:
               135-376
               

               Cow position:
               chrX:21664956-21664722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               77, 25
               

               Conread position:
               139-448
               

               Cow position:
               chrX:13265849-13265548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               249, 18
               

               Conread position:
               139-537
               

               Cow position:
               chrX:28878391-28878006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               269
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               48, 21
               

               Conread position:
               140-531
               

               Cow position:
               chrX:36283117-36283502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               271
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               157, 20
               

               Conread position:
               143-474
               

               Cow position:
               chrX:45598829-45598500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               226, 18
               

               Conread position:
               143-512
               

               Cow position:
               chrX:9201322-9201692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 27
               

               Conread position:
               144-511
               

               Cow position:
               chrX:40035674-40035300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 119
               

               Conread position:
               145-334
               

               Cow position:
               chrX:9953918-9954104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               146, 23
               

               Conread position:
               145-338
               

               Cow position:
               chrX:2206767-2206588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               141, 15
               

               Conread position:
               145-360
               

               Cow position:
               chrX:2648573-2648369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               145-361
               

               Cow position:
               chrX:48684446-48684239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               154, 15
               

               Conread position:
               145-367
               

               Cow position:
               chrX:35284394-35284611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               19, 85
               

               Conread position:
               145-368
               

               Cow position:
               chrX:4750521-4750312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               177
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               145-368
               

               Cow position:
               chrX:25571219-25571004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               169, 16
               

               Conread position:
               145-372
               

               Cow position:
               chrX:42339159-42338950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               145-383
               

               Cow position:
               chrX:30484428-30484194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               112, 28
               

               Conread position:
               145-418
               

               Cow position:
               chrX:9855077-9855349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               146, 32
               

               Conread position:
               145-424
               

               Cow position:
               chrX:43049119-43049400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               141, 25
               

               Conread position:
               145-454
               

               Cow position:
               chrX:11589815-11589503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               231
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               34, 15
               

               Conread position:
               145-469
               

               Cow position:
               chrX:17042467-17042782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               215
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               168, 15
               

               Conread position:
               145-500
               

               Cow position:
               chrX:37119376-37119724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               230, 26
               

               Conread position:
               145-502
               

               Cow position:
               chrX:35542668-35543021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 23
               

               Conread position:
               145-503
               

               Cow position:
               chrX:39558571-39558216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 16
               

               Conread position:
               145-509
               

               Cow position:
               chrX:22074577-22074940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 15
               

               Conread position:
               145-527
               

               Cow position:
               chrX:34543564-34543943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               267
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               151, 23
               

               Conread position:
               145-527
               

               Cow position:
               chrX:45174621-45175011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               266
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               80, 15
               

               Conread position:
               145-531
               

               Cow position:
               chrX:5900234-5900625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               105, 23
               

               Conread position:
               145-532
               

               Cow position:
               chrX:33493552-33493941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 16
               

               Conread position:
               145-533
               

               Cow position:
               chrX:42381323-42380948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 15
               

               Conread position:
               145-541
               

               Cow position:
               chrX:6278729-6278325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 23
               

               Conread position:
               145-546
               

               Cow position:
               chrX:619231-618830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 15
               

               Conread position:
               145-561
               

               Cow position:
               chrX:13382101-13382516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 37
               

               Conread position:
               145-669
               

               Cow position:
               chrX:23514241-23513729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 15
               

               Conread position:
               146-540
               

               Cow position:
               chrX:32623360-32623744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 14
               

               Conread position:
               147-495
               

               Cow position:
               chrX:37574635-37574966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 13
               

               Conread position:
               148-509
               

               Cow position:
               chrX:1503119-1503468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               252
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               213, 13
               

               Conread position:
               148-512
               

               Cow position:
               chrX:29602053-29601684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 22
               

               Conread position:
               148-618
               

               Cow position:
               chrX:27394234-27393795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 12
               

               Conread position:
               150-345
               

               Cow position:
               chrX:7425247-7425438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               152, 18
               

               Conread position:
               151-384
               

               Cow position:
               chrX:28836121-28835899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               151-527
               

               Cow position:
               chrX:32419993-32420369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               268
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               22, 81
               

               Conread position:
               155-630
               

               Cow position:
               chrX:41884635-41884138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 268
               

               Conread position:
               170-367
               

               Cow position:
               chrX:8991685-8991876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               117, 60
               

               Conread position:
               171-414
               

               Cow position:
               chrX:36961433-36961688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               192
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               171-460
               

               Cow position:
               chrX:47301105-47300812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               22, 31
               

               Conread position:
               174-337
               

               Cow position:
               chrX:16324162-16324003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               120, 69
               

               Conread position:
               174-356
               

               Cow position:
               chrX:25411638-25411821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               112, 103
               

               Conread position:
               174-363
               

               Cow position:
               chrX:46315579-46315390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               174-367
               

               Cow position:
               chrX:17908482-17908297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               174-367
               

               Cow position:
               chrX:42282234-42282419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               174-371
               

               Cow position:
               chrX:24259780-24259588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               174-373
               

               Cow position:
               chrX:17631001-17630809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               174-397
               

               Cow position:
               chrX:30833044-30832828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               199, 83
               

               Conread position:
               174-407
               

               Cow position:
               chrX:4091449-4091680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               121, 32
               

               Conread position:
               174-428
               

               Cow position:
               chrX:39938721-39938462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               178, 77
               

               Conread position:
               174-439
               

               Cow position:
               chrX:26876080-26875811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 9
               

               Conread position:
               174-459
               

               Cow position:
               chrX:29542417-29542127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 56
               

               Conread position:
               174-460
               

               Cow position:
               chrX:46587619-46587913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               122, 71
               

               Conread position:
               174-465
               

               Cow position:
               chrX:21004483-21004780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               195, 83
               

               Conread position:
               174-469
               

               Cow position:
               chrX:43780051-43779747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               212
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               59, 249
               

               Conread position:
               174-474
               

               Cow position:
               chrX:1499471-1499770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               225
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               118, 65
               

               Conread position:
               174-474
               

               Cow position:
               chrX:10959599-10959290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               214
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               184, 257
               

               Conread position:
               174-477
               

               Cow position:
               chrX:27680203-27680506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               195, 71
               

               Conread position:
               174-502
               

               Cow position:
               chrX:29120858-29121181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               201, 56
               

               Conread position:
               174-502
               

               Cow position:
               chrX:38642059-38642383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 147
               

               Conread position:
               174-502
               

               Cow position:
               chrX:48236613-48236951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               236
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               45, 275
               

               Conread position:
               174-507
               

               Cow position:
               chrX:37910254-37910583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               191, 54
               

               Conread position:
               174-512
               

               Cow position:
               chrX:30421138-30420810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               230
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               45, 157
               

               Conread position:
               174-522
               

               Cow position:
               chrX:27174797-27175152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               118, 67
               

               Conread position:
               174-604
               

               Cow position:
               chrX:38549250-38549677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               189, 116
               

               Conread position:
               175-460
               

               Cow position:
               chrX:33000706-33000996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               214
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               194, 92
               

               Conread position:
               175-510
               

               Cow position:
               chrX:10252379-10252058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               320, 18
               

               Conread position:
               175-512
               

               Cow position:
               chrX:34411643-34411990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               190, 103
               

               Conread position:
               175-524
               

               Cow position:
               chrX:37781315-37780952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 254
               

               Conread position:
               179-348
               

               Cow position:
               chrX:45874805-45874971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               107, 57
               

               Conread position:
               179-531
               

               Cow position:
               chrX:8869602-8869242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 116
               

               Conread position:
               180-505
               

               Cow position:
               chrX:11939119-11938797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 50
               

               Conread position:
               180-512
               

               Cow position:
               chrX:45110463-45110800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               190, 94
               

               Conread position:
               181-376
               

               Cow position:
               chrX:41271850-41271655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               5, 17
               

               Conread position:
               182-353
               

               Cow position:
               chrX:24149449-24149618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               182-367
               

               Cow position:
               chrX:1505522-1505700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               116, 24
               

               Conread position:
               183-382
               

               Cow position:
               chrX:8682119-8681921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               130, 23
               

               Conread position:
               183-451
               

               Cow position:
               chrX:16416317-16416591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               116, 125
               

               Conread position:
               183-533
               

               Cow position:
               chrX:3489074-3488728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               185, 47
               

               Conread position:
               183-549
               

               Cow position:
               chrX:23785464-23785825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 173
               

               Conread position:
               183-621
               

               Cow position:
               chrX:31311836-31312282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 145
               

               Conread position:
               184-511
               

               Cow position:
               chrX:22387437-22387110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               236
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               16, 232
               

               Conread position:
               185-509
               

               Cow position:
               chrX:14275922-14275603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               239
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               186, 19
               

               Conread position:
               188-459
               

               Cow position:
               chrX:12405571-12405291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               108, 14
               

               Conread position:
               188-640
               

               Cow position:
               chrX:32820845-32821285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 13
               

               Conread position:
               190-364
               

               Cow position:
               chrX:48035245-48035415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               164, 102
               

               Conread position:
               190-373
               

               Cow position:
               chrX:31256685-31256863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               190-426
               

               Cow position:
               chrX:37540942-37541177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               101, 59
               

               Conread position:
               190-481
               

               Cow position:
               chrX:47362794-47362511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               43, 65
               

               Conread position:
               190-557
               

               Cow position:
               chrX:36067837-36068204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 55
               

               Conread position:
               190-623
               

               Cow position:
               chrX:11633496-11633928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 51
               

               Conread position:
               193-373
               

               Cow position:
               chrX:31340525-31340705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               121, 169
               

               Conread position:
               193-375
               

               Cow position:
               chrX:7336647-7336828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               21, 56
               

               Conread position:
               193-382
               

               Cow position:
               chrX:8517694-8517875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               193-400
               

               Cow position:
               chrX:24132331-24132125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               121, 65
               

               Conread position:
               193-429
               

               Cow position:
               chrX:40321682-40321916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               163, 179
               

               Conread position:
               193-533
               

               Cow position:
               chrX:3579765-3580107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               97, 48
               

               Conread position:
               193-557
               

               Cow position:
               chrX:43730394-43730035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               190, 65
               

               Conread position:
               194-360
               

               Cow position:
               chrX:45759219-45759376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               128
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               194-376
               

               Cow position:
               chrX:16514443-16514264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               194-385
               

               Cow position:
               chrX:13245413-13245605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               123, 16
               

               Conread position:
               194-471
               

               Cow position:
               chrX:36060973-36061262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               97, 240
               

               Conread position:
               194-511
               

               Cow position:
               chrX:45845917-45846244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 222
               

               Conread position:
               194-559
               

               Cow position:
               chrX:42235712-42235330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               32, 62
               

               Conread position:
               196-368
               

               Cow position:
               chrX:18651221-18651051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               166, 154
               

               Conread position:
               196-522
               

               Cow position:
               chrX:27145446-27145758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 52
               

               Conread position:
               197-377
               

               Cow position:
               chrX:44657140-44656959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               89, 64
               

               Conread position:
               197-428
               

               Cow position:
               chrX:48044375-48044138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               197-437
               

               Cow position:
               chrX:20791993-20791754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               104, 44
               

               Conread position:
               197-460
               

               Cow position:
               chrX:21642655-21642391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               102, 48
               

               Conread position:
               197-533
               

               Cow position:
               chrX:47484447-47484100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               89, 237
               

               Conread position:
               198-373
               

               Cow position:
               chrX:46146735-46146566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               116, 43
               

               Conread position:
               199-497
               

               Cow position:
               chrX:9770858-9770563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               55, 165
               

               Conread position:
               199-511
               

               Cow position:
               chrX:35885903-35885587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               92, 31
               

               Conread position:
               200-366
               

               Cow position:
               chrX:37750426-37750267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               66, 88
               

               Conread position:
               200-532
               

               Cow position:
               chrX:46433310-46433652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               235
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               98, 295
               

               Conread position:
               201-511
               

               Cow position:
               chrX:34792482-34792173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 61
               

               Conread position:
               201-526
               

               Cow position:
               chrX:4398954-4399277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               229
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               127, 181
               

               Conread position:
               203-382
               

               Cow position:
               chrX:23666953-23667130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               90, 44
               

               Conread position:
               206-334
               

               Cow position:
               chrX:41271374-41271249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               80, 35
               

               Conread position:
               206-354
               

               Cow position:
               chrX:10128838-10128987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               206-377
               

               Cow position:
               chrX:14003811-14003640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               155, 165
               

               Conread position:
               206-532
               

               Cow position:
               chrX:8917226-8917556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               220
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               81, 221
               

               Conread position:
               207-422
               

               Cow position:
               chrX:41992207-41991991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               79, 23
               

               Conread position:
               207-558
               

               Cow position:
               chrX:48385529-48385181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               80, 207
               

               Conread position:
               208-368
               

               Cow position:
               chrX:23254378-23254214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               209-429
               

               Cow position:
               chrX:18515237-18515457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               78, 163
               

               Conread position:
               209-505
               

               Cow position:
               chrX:27206636-27206937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               109, 21
               

               Conread position:
               209-509
               

               Cow position:
               chrX:41068564-41068865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               215
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               167, 21
               

               Conread position:
               210-502
               

               Cow position:
               chrX:27301701-27302008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               19, 253
               

               Conread position:
               211-502
               

               Cow position:
               chrX:20584157-20584462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 231
               

               Conread position:
               214-433
               

               Cow position:
               chrX:36355957-36356177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               147, 27
               

               Conread position:
               215-528
               

               Cow position:
               chrX:31252257-31252567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 198
               

               Conread position:
               216-373
               

               Cow position:
               chrX:29055963-29056113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               219-373
               

               Cow position:
               chrX:35969236-35969087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               73, 31
               

               Conread position:
               219-531
               

               Cow position:
               chrX:27227970-27228291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               79, 20
               

               Conread position:
               224-531
               

               Cow position:
               chrX:5118654-5118336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 118
               

               Conread position:
               224-560
               

               Cow position:
               chrX:18426090-18425747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               227
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               63, 174
               

               Conread position:
               227-432
               

               Cow position:
               chrX:21844679-21844881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               60, 165
               

               Conread position:
               227-471
               

               Cow position:
               chrX:30263103-30263360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               230-511
               

               Cow position:
               chrX:38066596-38066313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               140, 98
               

               Conread position:
               231-368
               

               Cow position:
               chrX:10366371-10366234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               232-363
               

               Cow position:
               chrX:32215053-32215184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               55, 107
               

               Conread position:
               232-377
               

               Cow position:
               chrX:29723597-29723745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               232-451
               

               Cow position:
               chrX:10394242-10394022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               148, 69
               

               Conread position:
               232-463
               

               Cow position:
               chrX:42873249-42873476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               53, 5
               

               Conread position:
               232-509
               

               Cow position:
               chrX:21986436-21986152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               210
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               132, 181
               

               Conread position:
               232-513
               

               Cow position:
               chrX:34313889-34314169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 39
               

               Conread position:
               232-524
               

               Cow position:
               chrX:5919352-5919651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               220
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               130, 93
               

               Conread position:
               232-618
               

               Cow position:
               chrX:29680404-29680024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 196
               

               Conread position:
               232-634
               

               Cow position:
               chrX:11085201-11084797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 122
               

               Conread position:
               233-512
               

               Cow position:
               chrX:11614556-11614834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               59, 195
               

               Conread position:
               234-367
               

               Cow position:
               chrX:36723233-36723099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               235-474
               

               Cow position:
               chrX:21566261-21566512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               57, 114
               

               Conread position:
               235-560
               

               Cow position:
               chrX:9365815-9365488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               240
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               133, 10
               

               Conread position:
               236-470
               

               Cow position:
               chrX:27685107-27685350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               50, 201
               

               Conread position:
               237-546
               

               Cow position:
               chrX:18204602-18204288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               215
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               62, 260
               

               Conread position:
               237-618
               

               Cow position:
               chrX:616401-616016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 202
               

               Conread position:
               239-531
               

               Cow position:
               chrX:41027020-41027322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               128, 51
               

               Conread position:
               240-376
               

               Cow position:
               chrX:29032276-29032410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               72, 21
               

               Conread position:
               241-511
               

               Cow position:
               chrX:7710678-7710396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               50, 192
               

               Conread position:
               241-514
               

               Cow position:
               chrX:37986098-37986370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               128, 85
               

               Conread position:
               243-520
               

               Cow position:
               chrX:41870938-41871218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               14, 194
               

               Conread position:
               244-533
               

               Cow position:
               chrX:40685463-40685167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               217
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               128, 195
               

               Conread position:
               245-511
               

               Cow position:
               chrX:45976789-45977066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               49, 197
               

               Conread position:
               245-522
               

               Cow position:
               chrX:34505178-34504896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               120, 77
               

               Conread position:
               245-523
               

               Cow position:
               chrX:19273854-19273552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               224
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               21, 198
               

               Conread position:
               246-510
               

               Cow position:
               chrX:45875261-45875531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               53, 183
               

               Conread position:
               249-377
               

               Cow position:
               chrX:26493764-26493635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               99
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               249-521
               

               Cow position:
               chrX:38728610-38728887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               43, 130
               

               Conread position:
               250-448
               

               Cow position:
               chrX:19003174-19003372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               110, 176
               

               Conread position:
               250-513
               

               Cow position:
               chrX:43115025-43115295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               25, 177
               

               Conread position:
               252-459
               

               Cow position:
               chrX:27946183-27945964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               39, 193
               

               Conread position:
               253-528
               

               Cow position:
               chrX:18111267-18111538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               101, 37
               

               Conread position:
               253-618
               

               Cow position:
               chrX:23562512-23562889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               258
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               108, 85
               

               Conread position:
               256-537
               

               Cow position:
               chrX:26881688-26881399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 171
               

               Conread position:
               258-500
               

               Cow position:
               chrX:5679684-5679440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               36, 84
               

               Conread position:
               259-460
               

               Cow position:
               chrX:4296945-4296734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               29, 143
               

               Conread position:
               260-373
               

               Cow position:
               chrX:46291023-46291132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               92
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               262-522
               

               Cow position:
               chrX:42927933-42927670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 160
               

               Conread position:
               263-420
               

               Cow position:
               chrX:20790808-20790968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               117, 136
               

               Conread position:
               263-505
               

               Cow position:
               chrX:33539052-33539307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               69, 113
               

               Conread position:
               263-509
               

               Cow position:
               chrX:30338055-30337819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               98, 35
               

               Conread position:
               263-535
               

               Cow position:
               chrX:29229896-29230169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 97
               

               Conread position:
               263-541
               

               Cow position:
               chrX:38654543-38654270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               174, 47
               

               Conread position:
               265-460
               

               Cow position:
               chrX:17949601-17949402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               26, 161
               

               Conread position:
               265-496
               

               Cow position:
               chrX:43567811-43568046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               106, 160
               

               Conread position:
               274-620
               

               Cow position:
               chrX:16348672-16348329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               14, 117
               

               Conread position:
               275-496
               

               Cow position:
               chrX:11851770-11851552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               157, 101
               

               Conread position:
               280-524
               

               Cow position:
               chrX:34837150-34836910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               83, 36
               

               Conread position:
               282-533
               

               Cow position:
               chrX:47345240-47345492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               180
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               83, 91
               

               Conread position:
               284-524
               

               Cow position:
               chrX:1466069-1466319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               193
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               89, 146
               

               Conread position:
               285-510
               

               Cow position:
               chrX:918818-918574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               84, 178
               

               Conread position:
               285-528
               

               Cow position:
               chrX:29050156-29050404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               191
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               85, 145
               

               Conread position:
               295-513
               

               Cow position:
               chrX:4153116-4152886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               75, 150
               

               Conread position:
               296-510
               

               Cow position:
               chrX:22115397-22115175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               13, 140
               

               Conread position:
               297-513
               

               Cow position:
               chrX:18273137-18272914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               62, 143
               

               Conread position:
               298-531
               

               Cow position:
               chrX:4515606-4515850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               77, 143
               

               Conread position:
               307-618
               

               Cow position:
               chrX:19097291-19096971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               54, 151
               

               Conread position:
               310-500
               

               Cow position:
               chrX:12082391-12082192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               66, 133
               

               Conread position:
               313-513
               

               Cow position:
               chrX:32208874-32208678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               182, 57
               

               Conread position:
               314-531
               

               Cow position:
               chrX:20957186-20957401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               184, 68
               

               Conread position:
               319-496
               

               Cow position:
               chrX:19469563-19469379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               50, 105
               

               Conread position:
               320-560
               

               Cow position:
               chrX:32978133-32977896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               49, 105
               

               Conread position:
               322-533
               

               Cow position:
               chrX:35985764-35985982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               48, 109
               

               Conread position:
               323-510
               

               Cow position:
               chrX:25328659-25328474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               171, 79
               

               Conread position:
               331-512
               

               Cow position:
               chrX:27306407-27306597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               37, 111
               

               Conread position:
               332-505
               

               Cow position:
               chrX:2523722-2523545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               32, 100
               

               Conread position:
               360-622
               

               Cow position:
               chrX:40532050-40531799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               217, 67
               

               Conread position:
               364-516
               

               Cow position:
               chrX:22392987-22392837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               364-527
               

               Cow position:
               chrX:2935954-2936115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               131, 54
               

               Conread position:
               365-512
               

               Cow position:
               chrX:16984639-16984784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               111
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               130, 65
               

               Conread position:
               365-609
               

               Cow position:
               chrX:36848580-36848343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               28, 68
               

               Conread position:
               371-524
               

               Cow position:
               chrX:27668954-27668802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               124, 61
               

               Conread position:
               385-619
               

               Cow position:
               chrX:34508562-34508784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               210, 35
               

               Conread position:
               427-560
               

               Cow position:
               chrX:27189229-27189357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               68, 0
               
Show alignments to all cow chromosomes.
Conread position:	1-530
Cow position:	chrX:47343921-47344458 (view UCSC Genome Browser custom track)
Alignm length:	549
Alignm identity:	371
Alignm E-value:	0
Alignm gaps (pig, cow):	84, 23
Conread position:	2-348
Cow position:	chrX:3464446-3464101 (view UCSC Genome Browser custom track)
Alignm length:	353
Alignm identity:	244
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	141, 18
Conread position:	2-367
Cow position:	chrX:36373174-36373556 (view UCSC Genome Browser custom track)
Alignm length:	385
Alignm identity:	260
Alignm E-value:	8e-40
Alignm gaps (pig, cow):	141, 18
Conread position:	2-390
Cow position:	chrX:13030011-13029639 (view UCSC Genome Browser custom track)
Alignm length:	392
Alignm identity:	253
Alignm E-value:	3e-31
Alignm gaps (pig, cow):	251, 18
Conread position:	2-415
Cow position:	chrX:4343379-4343793 (view UCSC Genome Browser custom track)
Alignm length:	421
Alignm identity:	283
Alignm E-value:	0
Alignm gaps (pig, cow):	141, 18
Conread position:	2-430
Cow position:	chrX:10915668-10916104 (view UCSC Genome Browser custom track)
Alignm length:	445
Alignm identity:	290
Alignm E-value:	2e-36
Alignm gaps (pig, cow):	141, 18
Conread position:	2-435
Cow position:	chrX:14122121-14121688 (view UCSC Genome Browser custom track)
Alignm length:	442
Alignm identity:	289
Alignm E-value:	1.00053e-42
Alignm gaps (pig, cow):	102, 18
Conread position:	2-472
Cow position:	chrX:44737361-44736897 (view UCSC Genome Browser custom track)
Alignm length:	480
Alignm identity:	317
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	143, 22
Conread position:	2-518
Cow position:	chrX:14884332-14883805 (view UCSC Genome Browser custom track)
Alignm length:	537
Alignm identity:	404
Alignm E-value:	0
Alignm gaps (pig, cow):	144, 18
Conread position:	3-340
Cow position:	chrX:4123467-4123802 (view UCSC Genome Browser custom track)
Alignm length:	350
Alignm identity:	260
Alignm E-value:	0
Alignm gaps (pig, cow):	143, 27
Conread position:	3-351
Cow position:	chrX:12249432-12249777 (view UCSC Genome Browser custom track)
Alignm length:	358
Alignm identity:	264
Alignm E-value:	0
Alignm gaps (pig, cow):	143, 17
Conread position:	3-354
Cow position:	chrX:6655635-6655284 (view UCSC Genome Browser custom track)
Alignm length:	358
Alignm identity:	247
Alignm E-value:	0
Alignm gaps (pig, cow):	137, 17
Conread position:	3-376
Cow position:	chrX:19019461-19019105 (view UCSC Genome Browser custom track)
Alignm length:	379
Alignm identity:	280
Alignm E-value:	0
Alignm gaps (pig, cow):	285, 17
Conread position:	3-388
Cow position:	chrX:15139918-15139534 (view UCSC Genome Browser custom track)
Alignm length:	392
Alignm identity:	264
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	111, 101
Conread position:	3-390
Cow position:	chrX:16289931-16289543 (view UCSC Genome Browser custom track)
Alignm length:	393
Alignm identity:	276
Alignm E-value:	0
Alignm gaps (pig, cow):	149, 17
Conread position:	3-395
Cow position:	chrX:3405725-3405343 (view UCSC Genome Browser custom track)
Alignm length:	401
Alignm identity:	271
Alignm E-value:	2e-39
Alignm gaps (pig, cow):	44, 17
Conread position:	3-428
Cow position:	chrX:13785747-13785299 (view UCSC Genome Browser custom track)
Alignm length:	450
Alignm identity:	329
Alignm E-value:	0
Alignm gaps (pig, cow):	130, 17
Conread position:	3-429
Cow position:	chrX:323546-323953 (view UCSC Genome Browser custom track)
Alignm length:	434
Alignm identity:	291
Alignm E-value:	5e-36
Alignm gaps (pig, cow):	183, 17
Conread position:	3-433
Cow position:	chrX:41103419-41103845 (view UCSC Genome Browser custom track)
Alignm length:	438
Alignm identity:	294
Alignm E-value:	0
Alignm gaps (pig, cow):	149, 15
Conread position:	3-464
Cow position:	chrX:34401629-34402095 (view UCSC Genome Browser custom track)
Alignm length:	479
Alignm identity:	361
Alignm E-value:	0
Alignm gaps (pig, cow):	142, 17