Cow genome map

Conread name: Mixn-0018b20

Conread position: 148-306
Cow position: chr20:36779729-36779572 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 75, 0

Conread position: 149-305
Cow position: chr20:354896-354745 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 152-305
Cow position: chr20:23590744-23590593 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 55

Conread position: 152-305
Cow position: chr20:42346159-42346012 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 8, 15

Conread position: 159-305
Cow position: chr20:5078638-5078783 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 65, 0

Conread position: 160-278
Cow position: chr20:34001377-34001261 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 160-283
Cow position: chr20:35797624-35797743 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 160-297
Cow position: chr20:14620290-14620153 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 98, 7

Conread position: 160-297
Cow position: chr20:14759653-14759517 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 113
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 63, 0

Conread position: 160-297
Cow position: chr20:33363530-33363665 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 160-305
Cow position: chr20:4945239-4945098 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 63, 0

Conread position: 160-305
Cow position: chr20:14980497-14980350 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 80, 63

Conread position: 160-305
Cow position: chr20:21428173-21428315 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 39, 63

Conread position: 160-307
Cow position: chr20:12581942-12581796 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 161-287
Cow position: chr20:28955688-28955563 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 161-297
Cow position: chr20:14572352-14572216 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 62, 111

Conread position: 161-303
Cow position: chr20:9376482-9376623 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 63

Conread position: 161-303
Cow position: chr20:34221492-34221631 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 161-304
Cow position: chr20:6890727-6890863 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 161-304
Cow position: chr20:9433600-9433742 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 119
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 61, 0

Conread position: 161-305
Cow position: chr20:361174-361034 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 6, 63

Conread position: 161-305
Cow position: chr20:6054496-6054353 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 62, 0

Conread position: 161-305
Cow position: chr20:10200358-10200502 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 10, 63

Conread position: 161-305
Cow position: chr20:13943777-13943914 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 7, 59

Conread position: 161-305
Cow position: chr20:20967334-20967477 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 62, 0

Conread position: 161-305
Cow position: chr20:21372321-21372464 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 62, 0

Conread position: 161-305
Cow position: chr20:29845064-29845206 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 62, 0

Conread position: 161-305
Cow position: chr20:34097943-34097797 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 43, 65

Conread position: 161-305
Cow position: chr20:35208193-35208048 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 116, 43

Conread position: 161-305
Cow position: chr20:39016861-39016716 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 64

Conread position: 161-306
Cow position: chr20:10772219-10772363 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 120
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 130, 62

Conread position: 162-298
Cow position: chr20:16405626-16405760 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 162-302
Cow position: chr20:13025600-13025457 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 79, 59

Conread position: 162-303
Cow position: chr20:23678703-23678561 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 117
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 81, 61

Conread position: 162-303
Cow position: chr20:24711854-24711995 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 162-303
Cow position: chr20:40157914-40158054 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 117
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 61, 0

Conread position: 162-304
Cow position: chr20:33067346-33067205 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 61, 0

Conread position: 162-305
Cow position: chr20:3599381-3599242 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 109, 57

Conread position: 162-305
Cow position: chr20:4334516-4334373 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 119
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 122, 61

Conread position: 162-305
Cow position: chr20:5703485-5703628 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 91, 61

Conread position: 162-305
Cow position: chr20:12126290-12126148 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 119
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 61, 0

Conread position: 162-305
Cow position: chr20:14917299-14917441 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 162-305
Cow position: chr20:40781975-40782117 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 61, 0

Conread position: 162-307
Cow position: chr20:20934718-20934574 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 163-268
Cow position: chr20:23780911-23781015 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 163-293
Cow position: chr20:11101429-11101553 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 163-297
Cow position: chr20:20056469-20056338 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 111
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 16

Conread position: 163-297
Cow position: chr20:40423089-40422955 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 163-298
Cow position: chr20:12085418-12085288 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 163-305
Cow position: chr20:6372544-6372407 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 58, 0

Conread position: 163-305
Cow position: chr20:15589056-15589199 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 163-305
Cow position: chr20:17251733-17251873 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 46, 0

Conread position: 163-305
Cow position: chr20:20898575-20898434 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 164-305
Cow position: chr20:21345445-21345589 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 63

Conread position: 165-305
Cow position: chr20:7417150-7417011 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 166-304
Cow position: chr20:15565809-15565674 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 57, 0

Conread position: 166-304
Cow position: chr20:16492090-16492228 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 44, 58

Conread position: 166-304
Cow position: chr20:23064812-23064680 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 57, 0

Conread position: 166-305
Cow position: chr20:11482116-11481979 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 115
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 58, 0

Conread position: 166-305
Cow position: chr20:19751325-19751463 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 115
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 57, 0

Conread position: 166-305
Cow position: chr20:24902275-24902137 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 94, 57

Conread position: 166-305
Cow position: chr20:34777198-34777336 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 118
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 57, 0

Conread position: 166-305
Cow position: chr20:35146039-35146177 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 128, 57

Conread position: 166-305
Cow position: chr20:40511737-40511600 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 166-307
Cow position: chr20:13652349-13652209 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 57, 0

Conread position: 166-307
Cow position: chr20:33144535-33144395 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 167-293
Cow position: chr20:6423990-6424112 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 112, 52

Conread position: 167-295
Cow position: chr20:17845980-17846105 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 111
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 40, 0

Conread position: 167-303
Cow position: chr20:22484881-22485013 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 167-304
Cow position: chr20:6096476-6096340 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 56, 0

Conread position: 167-305
Cow position: chr20:5364949-5365082 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 167-305
Cow position: chr20:35741787-35741924 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 168-297
Cow position: chr20:21928925-21929053 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 55, 0

Conread position: 168-305
Cow position: chr20:16941267-16941132 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 169-304
Cow position: chr20:35727909-35727775 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 169-305
Cow position: chr20:580899-580764 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 113
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 54, 0

Conread position: 169-305
Cow position: chr20:7442111-7441982 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 170-305
Cow position: chr20:22959324-22959192 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 171-306
Cow position: chr20:16548255-16548121 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 52, 0

Conread position: 172-306
Cow position: chr20:6903338-6903471 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 172-307
Cow position: chr20:11135737-11135595 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 79, 51

Conread position: 173-305
Cow position: chr20:11444104-11444231 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 24, 0

Conread position: 177-301
Cow position: chr20:21941463-21941586 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 184-305
Cow position: chr20:23936148-23936029 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 184-307
Cow position: chr20:34108141-34108263 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 190-305
Cow position: chr20:7622939-7622827 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 190-307
Cow position: chr20:2316383-2316267 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 193-306
Cow position: chr20:6053423-6053311 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 197-301
Cow position: chr20:22922967-22923070 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 203-305
Cow position: chr20:18395980-18396081 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 205-306
Cow position: chr20:38934998-38934898 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 206-305
Cow position: chr20:13617284-13617382 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 87
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 206-306
Cow position: chr20:19746029-19746128 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 210-306
Cow position: chr20:31077843-31077937 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 212-305
Cow position: chr20:15515376-15515284 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 84
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 11, 0

Show alignments to all cow chromosomes.