Cow genome map
| Conread name: | Mixn-0020p11 |
| Conread position: | 1-107 |
| Cow position: | chr12:2228819-2228711 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-133 |
| Cow position: | chr12:22979645-22979778 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 1-148 |
| Cow position: | chr12:36213526-36213377 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 83 |
| Conread position: | 1-151 |
| Cow position: | chr12:24029233-24029384 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 1-158 |
| Cow position: | chr12:10075908-10075750 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 1-166 |
| Cow position: | chr12:29486222-29486391 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 22, 135 |
| Conread position: | 1-167 |
| Cow position: | chr12:32901040-32900871 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-174 |
| Cow position: | chr12:21452729-21452905 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-186 |
| Cow position: | chr12:5226482-5226310 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 1-201 |
| Cow position: | chr12:22517604-22517808 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 49, 84 |
| Conread position: | 1-204 |
| Cow position: | chr12:21212032-21211822 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-213 |
| Cow position: | chr12:28012983-28013197 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-214 |
| Cow position: | chr12:7674150-7673935 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-215 |
| Cow position: | chr12:258978-258762 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-215 |
| Cow position: | chr12:32340008-32340224 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-215 |
| Cow position: | chr12:46111869-46112085 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-217 |
| Cow position: | chr12:21888794-21889011 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-237 |
| Cow position: | chr12:29128114-29128351 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 95 |
| Conread position: | 1-238 |
| Cow position: | chr12:31829201-31829440 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-241 |
| Cow position: | chr12:32147381-32147621 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 44, 123 |
| Conread position: | 1-248 |
| Cow position: | chr12:16302090-16302339 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-251 |
| Cow position: | chr12:43681253-43681001 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-263 |
| Cow position: | chr12:33925449-33925713 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-264 |
| Cow position: | chr12:8674817-8675081 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 1-264 |
| Cow position: | chr12:25097017-25097280 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 113 |
| Conread position: | 1-264 |
| Cow position: | chr12:28763765-28764015 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 104, 43 |
| Conread position: | 1-265 |
| Cow position: | chr12:1408066-1407814 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 1-265 |
| Cow position: | chr12:36287766-36288030 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 1-270 |
| Cow position: | chr12:61959-62230 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr12:1007264-1006993 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr12:1056259-1056530 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 171 |
| Conread position: | 1-270 |
| Cow position: | chr12:5107306-5107035 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr12:5776881-5777152 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr12:8839502-8839230 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-270 |
| Cow position: | chr12:10358944-10358673 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 171 |
| Conread position: | 1-270 |
| Cow position: | chr12:14568566-14568837 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr12:15925505-15925774 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 1-270 |
| Cow position: | chr12:17718549-17718278 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr12:21665384-21665113 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr12:23138080-23138351 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr12:27614664-27614393 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr12:27958277-27958548 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr12:32011529-32011801 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-270 |
| Cow position: | chr12:32656797-32656532 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-270 |
| Cow position: | chr12:32757945-32757674 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr12:34176613-34176342 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr12:35547880-35548149 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 105 |
| Conread position: | 1-270 |
| Cow position: | chr12:37562253-37561987 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 1-270 |
| Cow position: | chr12:38893612-38893341 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr12:39930417-39930146 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr12:45145301-45145030 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-273 |
| Cow position: | chr12:27506401-27506673 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 1-274 |
| Cow position: | chr12:3717025-3717299 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-274 |
| Cow position: | chr12:12754908-12755180 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 1-274 |
| Cow position: | chr12:18585921-18585647 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 1-274 |
| Cow position: | chr12:20459471-20459744 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 116 |
| Conread position: | 1-274 |
| Cow position: | chr12:22202433-22202693 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 1-274 |
| Cow position: | chr12:25266085-25266358 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 154 |
| Conread position: | 1-274 |
| Cow position: | chr12:27929543-27929817 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 1-274 |
| Cow position: | chr12:27994349-27994075 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 1-274 |
| Cow position: | chr12:41337984-41338255 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 171 |
| Conread position: | 1-274 |
| Cow position: | chr12:42232558-42232284 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 1-280 |
| Cow position: | chr12:10931333-10931053 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 138 |
| Conread position: | 1-288 |
| Cow position: | chr12:21251066-21251352 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 99 |
| Conread position: | 2-138 |
| Cow position: | chr12:41973525-41973665 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 2-204 |
| Cow position: | chr12:33296880-33296672 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 2-270 |
| Cow position: | chr12:25148371-25148640 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 180 |
| Conread position: | 2-274 |
| Cow position: | chr12:3180656-3180390 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 3-148 |
| Cow position: | chr12:28571630-28571483 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 47, 122 |
| Conread position: | 3-260 |
| Cow position: | chr12:758667-758408 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 193 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 47, 132 |
| Conread position: | 3-260 |
| Cow position: | chr12:1476415-1476670 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 135 |
| Conread position: | 3-261 |
| Cow position: | chr12:21904605-21904348 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 104, 51 |
| Conread position: | 3-263 |
| Cow position: | chr12:19040860-19040598 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 169 |
| Conread position: | 3-270 |
| Cow position: | chr12:42604936-42605198 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 41 |
| Conread position: | 4-267 |
| Cow position: | chr12:19871458-19871196 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 161 |
| Conread position: | 5-270 |
| Cow position: | chr12:19155615-19155883 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 45, 164 |
| Conread position: | 6-237 |
| Cow position: | chr12:21010235-21010468 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 166 |
| Conread position: | 6-270 |
| Cow position: | chr12:1491410-1491144 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 166 |
| Conread position: | 7-167 |
| Cow position: | chr12:1789402-1789565 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 8-148 |
| Cow position: | chr12:15820973-15820829 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 16-215 |
| Cow position: | chr12:17969221-17969021 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 162 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 34, 57 |
| Conread position: | 16-312 |
| Cow position: | chr12:15939628-15939929 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 156 |
Show alignments to all cow chromosomes.