Cow genome map

Conread name: Mixn-0020p11

Conread position: 1-111
Cow position: chr23:671420-671307 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 1-112
Cow position: chr23:8707639-8707526 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 1-122
Cow position: chr23:29935522-29935398 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 1-125
Cow position: chr23:27313093-27312966 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 1-134
Cow position: chr23:21351701-21351836 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 1-136
Cow position: chr23:3730337-3730473 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 49, 113

Conread position: 1-138
Cow position: chr23:11377069-11377209 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 1-141
Cow position: chr23:5871148-5871291 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 1-148
Cow position: chr23:15567758-15567908 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 49, 0

Conread position: 1-154
Cow position: chr23:15180207-15180051 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 127
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 49, 0

Conread position: 1-167
Cow position: chr23:41015177-41015008 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 138
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 49, 0

Conread position: 1-168
Cow position: chr23:29448002-29448170 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 138
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 55, 43

Conread position: 1-175
Cow position: chr23:36028004-36028180 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 144
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 49, 168

Conread position: 1-201
Cow position: chr23:11070325-11070122 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 159
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 49, 172

Conread position: 1-204
Cow position: chr23:38934966-38935171 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 171

Conread position: 1-215
Cow position: chr23:28306090-28305875 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 170
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 49, 73

Conread position: 1-215
Cow position: chr23:31772020-31772234 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 172
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 49, 21

Conread position: 1-248
Cow position: chr23:29460001-29460252 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 49, 173

Conread position: 1-254
Cow position: chr23:11343745-11343490 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 167

Conread position: 1-264
Cow position: chr23:1048625-1048890 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 168

Conread position: 1-264
Cow position: chr23:1959375-1959113 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 95

Conread position: 1-264
Cow position: chr23:3709652-3709388 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 170

Conread position: 1-264
Cow position: chr23:14970703-14970968 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-264
Cow position: chr23:28915581-28915318 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-268
Cow position: chr23:41143689-41143420 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr23:609977-609706 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr23:771243-771514 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr23:1338242-1338504 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 52, 69

Conread position: 1-270
Cow position: chr23:3286007-3285736 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr23:3417080-3417351 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr23:4532449-4532720 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr23:5441166-5440895 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr23:10679585-10679856 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr23:10937054-10937325 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr23:11079632-11079361 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr23:14215978-14216246 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 43

Conread position: 1-270
Cow position: chr23:21008356-21008627 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr23:21772661-21772932 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 172

Conread position: 1-270
Cow position: chr23:24119803-24119532 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr23:28221949-28221679 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-270
Cow position: chr23:29043031-29042760 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr23:31605676-31605405 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr23:31704143-31703872 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr23:39745112-39744841 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-272
Cow position: chr23:2320699-2320968 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 12

Conread position: 1-273
Cow position: chr23:26828501-26828228 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr23:2023836-2024110 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 168

Conread position: 1-274
Cow position: chr23:2720705-2720430 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 172

Conread position: 1-274
Cow position: chr23:2761147-2760873 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 171

Conread position: 1-274
Cow position: chr23:2791514-2791790 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 205
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 50, 174

Conread position: 1-274
Cow position: chr23:3302103-3301830 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 94

Conread position: 1-274
Cow position: chr23:4891944-4891670 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 117

Conread position: 1-274
Cow position: chr23:5624324-5624598 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-274
Cow position: chr23:11782034-11781758 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 268

Conread position: 1-274
Cow position: chr23:14959703-14959974 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 105

Conread position: 1-274
Cow position: chr23:15528835-15528561 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-274
Cow position: chr23:20152972-20153247 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 169

Conread position: 1-274
Cow position: chr23:22144062-22144334 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 169

Conread position: 1-274
Cow position: chr23:27402385-27402110 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr23:30634346-30634620 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr23:37199262-37199540 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 172

Conread position: 1-276
Cow position: chr23:2737470-2737195 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 171

Conread position: 1-277
Cow position: chr23:5396332-5396609 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 2-301
Cow position: chr23:4637108-4637403 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 166

Conread position: 3-165
Cow position: chr23:2169550-2169385 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 48, 0

Conread position: 3-234
Cow position: chr23:34347120-34346887 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 169

Conread position: 3-264
Cow position: chr23:1398968-1399228 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 194
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 45, 91

Conread position: 3-270
Cow position: chr23:11128266-11127991 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 3-274
Cow position: chr23:4436865-4436607 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 199
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 104, 41

Conread position: 3-274
Cow position: chr23:13536669-13536406 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 61

Conread position: 6-270
Cow position: chr23:4265373-4265638 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 90

Conread position: 7-214
Cow position: chr23:2532266-2532461 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 96, 37

Conread position: 15-301
Cow position: chr23:3877907-3878195 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 34, 155

Show alignments to all cow chromosomes.