Cow genome map

Conread name: Mixn-0020p11

Conread position: 1-105
Cow position: chr28:25828690-25828584 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 1-111
Cow position: chr28:32588994-32588881 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 1-134
Cow position: chr28:12935979-12936115 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 1-145
Cow position: chr28:28723523-28723376 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr28:33688889-33688730 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 133
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 47, 102

Conread position: 1-167
Cow position: chr28:1198490-1198321 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 139
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 49, 0

Conread position: 1-167
Cow position: chr28:24992782-24992613 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 140
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 49, 0

Conread position: 1-202
Cow position: chr28:16597445-16597242 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 158
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 49, 171

Conread position: 1-237
Cow position: chr28:30870367-30870137 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 182
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 49, 172

Conread position: 1-264
Cow position: chr28:4958205-4958480 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 175

Conread position: 1-264
Cow position: chr28:7744392-7744133 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 89

Conread position: 1-264
Cow position: chr28:30098171-30097908 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 40

Conread position: 1-264
Cow position: chr28:32786132-32786396 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-265
Cow position: chr28:6472144-6472408 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-265
Cow position: chr28:23310041-23310307 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-265
Cow position: chr28:25408931-25408659 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 206
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 49, 91

Conread position: 1-266
Cow position: chr28:1197423-1197155 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 86

Conread position: 1-267
Cow position: chr28:5825144-5824862 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 211
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 49, 183

Conread position: 1-267
Cow position: chr28:28184686-28184412 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 113

Conread position: 1-268
Cow position: chr28:3627308-3627039 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-268
Cow position: chr28:26419706-26419973 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 150

Conread position: 1-270
Cow position: chr28:444703-444432 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:482413-482684 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:1956664-1956393 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:2645010-2644739 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:4929155-4929426 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:5312269-5311998 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:5637345-5637075 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 134

Conread position: 1-270
Cow position: chr28:7059525-7059254 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:7443174-7443445 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:7829801-7829531 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-270
Cow position: chr28:7907251-7907521 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 170

Conread position: 1-270
Cow position: chr28:9182164-9181893 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:9288098-9288369 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-270
Cow position: chr28:10194310-10194581 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:10303133-10302862 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:11501927-11502192 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 89

Conread position: 1-270
Cow position: chr28:13323428-13323157 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:14150283-14150018 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 196
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 49, 140

Conread position: 1-270
Cow position: chr28:14666440-14666171 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 170

Conread position: 1-270
Cow position: chr28:15054451-15054184 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:15604912-15604635 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 177

Conread position: 1-270
Cow position: chr28:15917232-15917501 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 12

Conread position: 1-270
Cow position: chr28:16181663-16181392 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:20967374-20967645 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:21896577-21896306 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:23620258-23619989 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 199
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 137

Conread position: 1-270
Cow position: chr28:24671089-24670818 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-270
Cow position: chr28:24886155-24885884 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:25070142-25069865 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 174

Conread position: 1-270
Cow position: chr28:25701642-25701909 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 201
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 49, 144

Conread position: 1-270
Cow position: chr28:25849856-25849585 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:28471320-28471047 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:28929128-28928860 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 90

Conread position: 1-270
Cow position: chr28:28934668-28934939 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr28:30304715-30304985 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 201
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 47, 116

Conread position: 1-274
Cow position: chr28:785962-785688 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr28:2088870-2088595 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 169

Conread position: 1-274
Cow position: chr28:5211417-5211143 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr28:5748411-5748685 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr28:5940781-5940507 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr28:7005322-7005048 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr28:12155136-12154865 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 202
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr28:12650514-12650251 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 43

Conread position: 1-274
Cow position: chr28:13463258-13462984 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-274
Cow position: chr28:17663654-17663928 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 168

Conread position: 1-274
Cow position: chr28:18516851-18517124 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 164

Conread position: 1-274
Cow position: chr28:20935117-20935391 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr28:21767998-21768272 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr28:22230037-22230309 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 49, 173

Conread position: 1-274
Cow position: chr28:29036357-29036631 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr28:33255616-33255342 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr28:34597539-34597265 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-277
Cow position: chr28:6047091-6046814 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-277
Cow position: chr28:6535503-6535780 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-325
Cow position: chr28:6959524-6959199 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 2-133
Cow position: chr28:29807147-29807279 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 11

Conread position: 2-148
Cow position: chr28:24488091-24488240 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 2-161
Cow position: chr28:23615437-23615275 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 48, 0

Conread position: 2-258
Cow position: chr28:26923335-26923594 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 171

Conread position: 2-271
Cow position: chr28:25826824-25827095 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 170

Conread position: 3-168
Cow position: chr28:10643233-10643398 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 47, 72

Conread position: 3-270
Cow position: chr28:1025040-1025310 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 199
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 47, 167

Conread position: 3-270
Cow position: chr28:8717660-8717929 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 169

Conread position: 3-270
Cow position: chr28:34583217-34582948 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 169

Conread position: 3-313
Cow position: chr28:10295101-10294793 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 38, 93

Conread position: 4-223
Cow position: chr28:331608-331829 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 168

Conread position: 4-247
Cow position: chr28:34082980-34083222 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 184
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 46, 71

Conread position: 4-270
Cow position: chr28:3004227-3004497 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 167

Conread position: 4-270
Cow position: chr28:12997969-12997707 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 197
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 49, 109

Conread position: 4-274
Cow position: chr28:22254906-22255177 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 165

Conread position: 5-270
Cow position: chr28:6478510-6478243 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 167

Conread position: 5-274
Cow position: chr28:34731023-34730753 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 167

Conread position: 8-261
Cow position: chr28:10772371-10772117 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 164

Show alignments to all cow chromosomes.