Cow genome map

Conread name: Mixn-0020p11

Conread position: 1-117
Cow position: chr29:11119446-11119565 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 1-134
Cow position: chr29:2401954-2401818 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 49, 0

Conread position: 1-140
Cow position: chr29:24983301-24983443 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 1-148
Cow position: chr29:14313883-14314033 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 49, 0

Conread position: 1-155
Cow position: chr29:1688014-1687857 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 49, 0

Conread position: 1-167
Cow position: chr29:18010841-18010672 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 138
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 49, 0

Conread position: 1-167
Cow position: chr29:34780720-34780889 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 136
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 49, 0

Conread position: 1-175
Cow position: chr29:38229273-38229097 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 146
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 49, 168

Conread position: 1-194
Cow position: chr29:35739433-35739617 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 31, 42

Conread position: 1-202
Cow position: chr29:38409463-38409256 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 42, 0

Conread position: 1-215
Cow position: chr29:13099436-13099220 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 172
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 47, 65

Conread position: 1-215
Cow position: chr29:15072215-15072431 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 170
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 171

Conread position: 1-215
Cow position: chr29:21535654-21535863 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 59, 126

Conread position: 1-215
Cow position: chr29:40498610-40498825 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 166
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 48, 134

Conread position: 1-229
Cow position: chr29:35280864-35281079 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 106, 12

Conread position: 1-233
Cow position: chr29:12194614-12194380 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-238
Cow position: chr29:36634083-36634323 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 131

Conread position: 1-252
Cow position: chr29:44020831-44021076 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 83, 43

Conread position: 1-253
Cow position: chr29:19397754-19397500 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 189
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 49, 172

Conread position: 1-254
Cow position: chr29:13624108-13624363 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-262
Cow position: chr29:2693706-2693448 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 197
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 49, 150

Conread position: 1-264
Cow position: chr29:45198-45460 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 43

Conread position: 1-264
Cow position: chr29:14208301-14208555 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 48, 88

Conread position: 1-264
Cow position: chr29:19620003-19620267 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 126

Conread position: 1-264
Cow position: chr29:32543404-32543138 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-264
Cow position: chr29:35273773-35274038 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-265
Cow position: chr29:1478717-1478452 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 76

Conread position: 1-265
Cow position: chr29:13585481-13585216 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 84

Conread position: 1-265
Cow position: chr29:32556478-32556744 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-267
Cow position: chr29:10237401-10237671 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 186
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 49, 248

Conread position: 1-270
Cow position: chr29:607382-607642 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 12

Conread position: 1-270
Cow position: chr29:726995-726724 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 171

Conread position: 1-270
Cow position: chr29:2484174-2483903 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr29:3329858-3329587 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr29:4163954-4163683 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr29:4200644-4200386 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 44, 171

Conread position: 1-270
Cow position: chr29:7847658-7847384 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 173

Conread position: 1-270
Cow position: chr29:14839286-14839017 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr29:15117560-15117831 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr29:15699578-15699307 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr29:15943618-15943348 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 192
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 44, 95

Conread position: 1-270
Cow position: chr29:15966288-15966559 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr29:16036151-16036422 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr29:19525024-19525294 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 95

Conread position: 1-270
Cow position: chr29:21227242-21226972 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr29:21429594-21429865 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr29:21474415-21474144 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr29:22746166-22745895 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr29:24806721-24806450 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 76

Conread position: 1-270
Cow position: chr29:27310386-27310657 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 197
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 47, 168

Conread position: 1-270
Cow position: chr29:31094319-31094591 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 172

Conread position: 1-270
Cow position: chr29:31184642-31184371 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr29:31765306-31765035 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr29:32515594-32515323 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr29:35265183-35264912 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr29:35956036-35956307 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr29:40157010-40156739 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-270
Cow position: chr29:42255712-42255983 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-272
Cow position: chr29:8623942-8624203 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 50

Conread position: 1-274
Cow position: chr29:2103113-2102839 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 113

Conread position: 1-274
Cow position: chr29:2838070-2838344 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr29:5240662-5240386 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 115

Conread position: 1-274
Cow position: chr29:7811931-7812205 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr29:10452550-10452823 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 150

Conread position: 1-274
Cow position: chr29:10846222-10845948 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-274
Cow position: chr29:16347465-16347198 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 203
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 59, 43

Conread position: 1-274
Cow position: chr29:20254432-20254159 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 147

Conread position: 1-274
Cow position: chr29:23979976-23979703 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 167

Conread position: 1-274
Cow position: chr29:26161567-26161845 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr29:28697113-28697386 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 124

Conread position: 1-274
Cow position: chr29:34794597-34794871 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 165

Conread position: 1-274
Cow position: chr29:39076453-39076726 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 173

Conread position: 1-274
Cow position: chr29:43326780-43326506 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr29:45462499-45462225 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-275
Cow position: chr29:38746314-38746038 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-277
Cow position: chr29:10820449-10820726 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 173

Conread position: 1-277
Cow position: chr29:16101852-16102128 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 84

Conread position: 1-292
Cow position: chr29:27702343-27702052 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-301
Cow position: chr29:2430355-2430046 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 106

Conread position: 1-301
Cow position: chr29:7427876-7428175 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-301
Cow position: chr29:40294573-40294270 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-325
Cow position: chr29:2463606-2463929 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 167

Conread position: 2-270
Cow position: chr29:7604654-7604387 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 11

Conread position: 3-186
Cow position: chr29:40954631-40954816 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 148
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 47, 166

Conread position: 3-270
Cow position: chr29:3584948-3585214 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 169

Conread position: 3-270
Cow position: chr29:9079533-9079803 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 171

Conread position: 3-270
Cow position: chr29:19890832-19890550 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 207
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 47, 0

Conread position: 3-270
Cow position: chr29:32962579-32962309 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 192
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 47, 170

Conread position: 3-272
Cow position: chr29:13058004-13057737 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 47, 143

Conread position: 3-272
Cow position: chr29:15941761-15942033 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 197
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 43, 81

Conread position: 4-270
Cow position: chr29:2745239-2745502 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 199
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 46, 92

Conread position: 5-274
Cow position: chr29:42807248-42806983 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 39

Conread position: 8-301
Cow position: chr29:649311-649022 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 218
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 42, 160

Show alignments to all cow chromosomes.