Cow genome map

Conread name: Mixn-0023l07

Conread position: 1-116
Cow position: chr18:51690146-51690028 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 1-121
Cow position: chr18:29079086-29078963 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 1-122
Cow position: chr18:17381162-17381038 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 1-127
Cow position: chr18:10221335-10221464 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 49, 0

Conread position: 1-135
Cow position: chr18:43464423-43464561 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 1-168
Cow position: chr18:43430355-43430186 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 142
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 49, 74

Conread position: 1-184
Cow position: chr18:16094234-16094049 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 148
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 48, 168

Conread position: 1-195
Cow position: chr18:16463297-16463493 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 158
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 49, 171

Conread position: 1-204
Cow position: chr18:10292080-10291875 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 158
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 49, 171

Conread position: 1-204
Cow position: chr18:12201182-12201379 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 77, 43

Conread position: 1-215
Cow position: chr18:18215664-18215883 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 171
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 49, 174

Conread position: 1-232
Cow position: chr18:30607045-30606812 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-233
Cow position: chr18:26243109-26243343 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 179
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 49, 171

Conread position: 1-239
Cow position: chr18:54047228-54046980 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 186
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 49, 179

Conread position: 1-262
Cow position: chr18:36511983-36511720 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-262
Cow position: chr18:38158193-38158456 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 168

Conread position: 1-264
Cow position: chr18:16173264-16173528 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 172

Conread position: 1-264
Cow position: chr18:31564338-31564597 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 77

Conread position: 1-264
Cow position: chr18:50093095-50093360 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-267
Cow position: chr18:40484349-40484082 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 168

Conread position: 1-270
Cow position: chr18:603115-603386 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:5202838-5202567 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:9981969-9981698 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:11869836-11869565 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:13270259-13269988 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:19310516-19310245 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:22182190-22182459 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:23688521-23688250 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:24037497-24037765 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:24212286-24212015 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:24413644-24413374 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 115

Conread position: 1-270
Cow position: chr18:24619778-24619507 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:27994635-27994906 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:28928246-28928511 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 199
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 66, 43

Conread position: 1-270
Cow position: chr18:29071770-29071500 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:32164582-32164853 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:35444019-35444290 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:37583108-37583380 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:37733038-37732768 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 90

Conread position: 1-270
Cow position: chr18:40195461-40195191 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 170

Conread position: 1-270
Cow position: chr18:47745102-47744831 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:50835036-50835309 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 173

Conread position: 1-270
Cow position: chr18:51459492-51459763 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:51602316-51602587 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr18:51663524-51663254 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 59

Conread position: 1-270
Cow position: chr18:52629909-52630179 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 141

Conread position: 1-270
Cow position: chr18:55554600-55554329 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-274
Cow position: chr18:14127937-14128209 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 101

Conread position: 1-274
Cow position: chr18:14419326-14419053 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr18:19355862-19355590 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 129

Conread position: 1-274
Cow position: chr18:23701449-23701722 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr18:23802372-23802099 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 49, 113

Conread position: 1-274
Cow position: chr18:27990106-27989832 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 113

Conread position: 1-274
Cow position: chr18:28968940-28969211 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr18:29863255-29863529 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 113

Conread position: 1-274
Cow position: chr18:37509317-37509044 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 154

Conread position: 1-276
Cow position: chr18:5536321-5536047 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 167

Conread position: 1-277
Cow position: chr18:35293465-35293193 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 106

Conread position: 2-219
Cow position: chr18:40693589-40693366 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 171

Conread position: 2-270
Cow position: chr18:52574463-52574194 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 140

Conread position: 3-205
Cow position: chr18:42467217-42467412 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 160
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 61, 41

Conread position: 3-267
Cow position: chr18:29240434-29240167 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 170

Conread position: 4-270
Cow position: chr18:17323726-17323468 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 203
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 46, 128

Conread position: 4-270
Cow position: chr18:33607581-33607315 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 199
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 44, 151

Conread position: 8-270
Cow position: chr18:17335398-17335657 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 71

Conread position: 8-300
Cow position: chr18:33522569-33522278 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 164

Conread position: 10-234
Cow position: chr18:29991684-29991901 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 177
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 97, 34

Conread position: 13-270
Cow position: chr18:35057363-35057104 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 161

Show alignments to all cow chromosomes.