Cow genome map
| Conread name: | Mixn-0023l11 |
| Conread position: | 1-116 |
| Cow position: | chr21:15398561-15398443 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-119 |
| Cow position: | chr21:32773363-32773242 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-162 |
| Cow position: | chr21:27375534-27375369 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-167 |
| Cow position: | chr21:13735733-13735900 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 49, 57 |
| Conread position: | 1-167 |
| Cow position: | chr21:19627280-19627448 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 49, 84 |
| Conread position: | 1-167 |
| Cow position: | chr21:23341079-23340910 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-167 |
| Cow position: | chr21:26875020-26874851 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-168 |
| Cow position: | chr21:4283126-4283296 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-178 |
| Cow position: | chr21:25986844-25986664 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 49, 94 |
| Conread position: | 1-187 |
| Cow position: | chr21:28598020-28597832 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 49, 165 |
| Conread position: | 1-201 |
| Cow position: | chr21:38866184-38866386 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-212 |
| Cow position: | chr21:25598101-25597888 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-212 |
| Cow position: | chr21:36506410-36506623 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-215 |
| Cow position: | chr21:15546260-15546470 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 49, 88 |
| Conread position: | 1-232 |
| Cow position: | chr21:4188964-4188736 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 49, 76 |
| Conread position: | 1-232 |
| Cow position: | chr21:34900246-34900479 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 171 |
| Conread position: | 1-233 |
| Cow position: | chr21:4035834-4036067 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 49, 169 |
| Conread position: | 1-233 |
| Cow position: | chr21:47977695-47977461 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 171 |
| Conread position: | 1-247 |
| Cow position: | chr21:43404009-43404257 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-251 |
| Cow position: | chr21:49655755-49656007 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 1-261 |
| Cow position: | chr21:38450560-38450809 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 103, 48 |
| Conread position: | 1-264 |
| Cow position: | chr21:3804352-3804617 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-264 |
| Cow position: | chr21:10042792-10042527 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 168 |
| Conread position: | 1-264 |
| Cow position: | chr21:24826706-24826971 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-264 |
| Cow position: | chr21:25190079-25189811 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-264 |
| Cow position: | chr21:34255150-34255417 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 48, 172 |
| Conread position: | 1-265 |
| Cow position: | chr21:6864132-6864389 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 49, 91 |
| Conread position: | 1-265 |
| Cow position: | chr21:14534041-14533775 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-265 |
| Cow position: | chr21:16890412-16890680 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 1-267 |
| Cow position: | chr21:12153253-12152984 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 1-270 |
| Cow position: | chr21:449596-449326 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr21:2514279-2514007 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr21:2664737-2665005 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 150 |
| Conread position: | 1-270 |
| Cow position: | chr21:4898536-4898804 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 149 |
| Conread position: | 1-270 |
| Cow position: | chr21:5020574-5020303 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 1-270 |
| Cow position: | chr21:5642411-5642679 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 1-270 |
| Cow position: | chr21:6966044-6966315 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr21:11405452-11405723 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr21:11509369-11509098 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr21:19351433-19351704 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr21:22719670-22719938 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 1-270 |
| Cow position: | chr21:27148124-27148394 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 84 |
| Conread position: | 1-270 |
| Cow position: | chr21:30297907-30297635 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 172 |
| Conread position: | 1-270 |
| Cow position: | chr21:32237767-32237496 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr21:33710072-33710342 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 162 |
| Conread position: | 1-270 |
| Cow position: | chr21:34823604-34823333 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr21:36376418-36376147 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr21:37923613-37923344 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 1-270 |
| Cow position: | chr21:39428830-39428559 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr21:39470336-39470608 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 172 |
| Conread position: | 1-270 |
| Cow position: | chr21:41796293-41796564 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr21:42917221-42916951 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-270 |
| Cow position: | chr21:48273769-48274040 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-271 |
| Cow position: | chr21:37374634-37374366 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 12 |
| Conread position: | 1-274 |
| Cow position: | chr21:149575-149302 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 1-274 |
| Cow position: | chr21:1195966-1195693 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 167 |
| Conread position: | 1-274 |
| Cow position: | chr21:2878412-2878681 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 1-274 |
| Cow position: | chr21:3782201-3781927 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-274 |
| Cow position: | chr21:10853693-10853419 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 165 |
| Conread position: | 1-274 |
| Cow position: | chr21:13162860-13162592 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 1-274 |
| Cow position: | chr21:17144116-17143843 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 113 |
| Conread position: | 1-274 |
| Cow position: | chr21:26400338-26400610 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 1-274 |
| Cow position: | chr21:27608274-27608546 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 43 |
| Conread position: | 1-274 |
| Cow position: | chr21:31512842-31513114 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 134 |
| Conread position: | 1-274 |
| Cow position: | chr21:33256984-33256710 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 1-274 |
| Cow position: | chr21:33316938-33317212 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 174 |
| Conread position: | 1-274 |
| Cow position: | chr21:36534780-36535054 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 1-274 |
| Cow position: | chr21:47648768-47648494 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 2-165 |
| Cow position: | chr21:37122987-37123155 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 2-270 |
| Cow position: | chr21:33728534-33728270 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 48, 13 |
| Conread position: | 3-151 |
| Cow position: | chr21:20244174-20244325 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 3-167 |
| Cow position: | chr21:33965293-33965460 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 3-204 |
| Cow position: | chr21:45782299-45782500 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 47, 169 |
| Conread position: | 3-262 |
| Cow position: | chr21:4559644-4559903 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 166 |
| Conread position: | 3-267 |
| Cow position: | chr21:28476381-28476646 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 166 |
| Conread position: | 3-270 |
| Cow position: | chr21:27125292-27125560 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 131 |
| Conread position: | 3-270 |
| Cow position: | chr21:30966517-30966786 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 169 |
| Conread position: | 3-288 |
| Cow position: | chr21:1766089-1766379 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 47, 10 |
| Conread position: | 4-267 |
| Cow position: | chr21:13314875-13314616 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 101 |
| Conread position: | 4-270 |
| Cow position: | chr21:4586254-4586521 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 168 |
| Conread position: | 5-138 |
| Cow position: | chr21:34657418-34657285 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 45, 90 |
| Conread position: | 5-305 |
| Cow position: | chr21:5010046-5010347 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 45, 71 |
| Conread position: | 6-117 |
| Cow position: | chr21:25479756-25479642 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 6-267 |
| Cow position: | chr21:47944382-47944120 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 162 |
| Conread position: | 8-271 |
| Cow position: | chr21:27620079-27620345 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 164 |
Show alignments to all cow chromosomes.