Cow genome map

Conread name: Mixn-0023l11

Conread position: 1-133
Cow position: chr22:15174817-15174952 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 49, 0

Conread position: 1-134
Cow position: chr22:11698353-11698490 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 1-140
Cow position: chr22:8299401-8299259 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 49, 0

Conread position: 1-148
Cow position: chr22:5312492-5312642 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 1-157
Cow position: chr22:36207961-36207802 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 49, 0

Conread position: 1-163
Cow position: chr22:1036134-1035969 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 48, 0

Conread position: 1-169
Cow position: chr22:20237319-20237490 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 49, 0

Conread position: 1-171
Cow position: chr22:30189628-30189450 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 143
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 49, 0

Conread position: 1-186
Cow position: chr22:10550121-10549934 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 151
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 49, 171

Conread position: 1-201
Cow position: chr22:25241273-25241466 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 49, 12

Conread position: 1-208
Cow position: chr22:699200-698992 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 165
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 49, 134

Conread position: 1-215
Cow position: chr22:8776463-8776679 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 168
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 49, 171

Conread position: 1-233
Cow position: chr22:3303408-3303640 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 50

Conread position: 1-237
Cow position: chr22:13775754-13775515 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 49, 172

Conread position: 1-238
Cow position: chr22:1280396-1280627 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 176
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 58, 88

Conread position: 1-245
Cow position: chr22:40326551-40326304 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 40, 172

Conread position: 1-262
Cow position: chr22:25968405-25968662 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 49, 170

Conread position: 1-264
Cow position: chr22:5015342-5015077 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-264
Cow position: chr22:18603556-18603821 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-264
Cow position: chr22:28785374-28785110 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-264
Cow position: chr22:39473357-39473626 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 199
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 39, 101

Conread position: 1-264
Cow position: chr22:45354073-45353814 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 59, 105

Conread position: 1-265
Cow position: chr22:30675472-30675738 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-267
Cow position: chr22:8339672-8339404 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-267
Cow position: chr22:12728406-12728674 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 168

Conread position: 1-270
Cow position: chr22:540389-540119 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 84

Conread position: 1-270
Cow position: chr22:697187-696915 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 172

Conread position: 1-270
Cow position: chr22:3489081-3489350 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 142

Conread position: 1-270
Cow position: chr22:3714248-3714519 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr22:10577233-10577504 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr22:10906950-10907221 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 168

Conread position: 1-270
Cow position: chr22:15013434-15013709 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 134

Conread position: 1-270
Cow position: chr22:15953745-15954013 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 189
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 47, 105

Conread position: 1-270
Cow position: chr22:20569786-20570057 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr22:21192947-21193218 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr22:22107298-22107027 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr22:22607413-22607142 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr22:25340408-25340140 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 171

Conread position: 1-270
Cow position: chr22:25724749-25725020 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr22:26089981-26090252 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr22:26943954-26944225 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr22:27306709-27306980 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr22:29855104-29854835 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 106

Conread position: 1-270
Cow position: chr22:32943703-32943432 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr22:34758806-34759078 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 141

Conread position: 1-270
Cow position: chr22:35910233-35910504 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 164

Conread position: 1-270
Cow position: chr22:37270350-37270080 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 172

Conread position: 1-270
Cow position: chr22:39902636-39902365 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr22:40589646-40589374 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr22:40828813-40829085 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr22:43236092-43235821 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr22:44365955-44366226 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr22:45281204-45280933 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr22:46578449-46578724 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 49, 183

Conread position: 1-273
Cow position: chr22:15308708-15308981 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-273
Cow position: chr22:26104884-26105157 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-274
Cow position: chr22:1517787-1518059 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 172

Conread position: 1-274
Cow position: chr22:5315495-5315221 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 88

Conread position: 1-274
Cow position: chr22:6339908-6339635 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 167

Conread position: 1-274
Cow position: chr22:9269450-9269182 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 12

Conread position: 1-274
Cow position: chr22:19140450-19140723 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 158

Conread position: 1-274
Cow position: chr22:19600550-19600820 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 11

Conread position: 1-274
Cow position: chr22:25336406-25336132 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-274
Cow position: chr22:31315798-31315525 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr22:39465286-39465560 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr22:42994428-42994154 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-276
Cow position: chr22:5452907-5452631 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 171

Conread position: 1-276
Cow position: chr22:46568834-46569110 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 10

Conread position: 1-288
Cow position: chr22:11988451-11988740 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 41

Conread position: 1-297
Cow position: chr22:44925071-44925370 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-301
Cow position: chr22:32209866-32209569 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 172

Conread position: 1-309
Cow position: chr22:29397339-29397015 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-312
Cow position: chr22:10313882-10313578 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 219
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 55, 43

Conread position: 1-312
Cow position: chr22:22862845-22862531 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 2-146
Cow position: chr22:11663202-11663345 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 38, 11

Conread position: 2-186
Cow position: chr22:33200535-33200349 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 148
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 48, 170

Conread position: 2-246
Cow position: chr22:4567365-4567119 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 185
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 49, 168

Conread position: 2-262
Cow position: chr22:31331618-31331880 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 167

Conread position: 2-270
Cow position: chr22:12969152-12969409 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 208
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 48, 11

Conread position: 2-271
Cow position: chr22:9371612-9371340 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 154

Conread position: 2-300
Cow position: chr22:5334289-5334598 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 141

Conread position: 3-162
Cow position: chr22:30963154-30962993 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 45, 145

Conread position: 3-201
Cow position: chr22:8881399-8881199 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 169

Conread position: 3-237
Cow position: chr22:11838166-11838390 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 180
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 43, 147

Conread position: 3-254
Cow position: chr22:32220713-32220461 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 190
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 166

Conread position: 3-264
Cow position: chr22:2561217-2561492 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 199
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 47, 169

Conread position: 3-267
Cow position: chr22:48271762-48272022 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 46, 132

Conread position: 3-270
Cow position: chr22:533354-533078 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 132

Conread position: 3-270
Cow position: chr22:1483666-1483400 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 196
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 47, 130

Conread position: 3-270
Cow position: chr22:3275104-3275373 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 169

Conread position: 3-270
Cow position: chr22:12869203-12869473 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 99

Conread position: 3-270
Cow position: chr22:41946463-41946723 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 38, 93

Conread position: 3-270
Cow position: chr22:47958012-47958274 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 194
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 104, 41

Conread position: 3-273
Cow position: chr22:28130006-28129735 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 191
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 47, 160

Conread position: 3-274
Cow position: chr22:3433710-3433982 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 166

Conread position: 3-312
Cow position: chr22:34931826-34932137 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 222
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 47, 169

Conread position: 3-316
Cow position: chr22:24817510-24817823 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 74

Conread position: 4-127
Cow position: chr22:23864066-23863940 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 4-196
Cow position: chr22:33902051-33902248 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 46, 0

Conread position: 4-212
Cow position: chr22:12625307-12625515 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 52, 40

Conread position: 4-269
Cow position: chr22:18194948-18194682 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 56, 40

Conread position: 4-270
Cow position: chr22:30918342-30918074 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 38

Conread position: 4-277
Cow position: chr22:34607741-34607466 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 168

Conread position: 5-274
Cow position: chr22:11754391-11754649 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 43, 168

Conread position: 14-233
Cow position: chr22:46440075-46440296 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 168
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 36, 155

Conread position: 16-270
Cow position: chr22:13185048-13184799 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 192
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 44, 116

Show alignments to all cow chromosomes.