Cow genome map

Conread name: Mixn-0023l11

Conread position: 1-105
Cow position: chr24:7960175-7960281 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 1-120
Cow position: chr24:14250242-14250364 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 1-137
Cow position: chr24:13496625-13496486 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 1-140
Cow position: chr24:11104811-11104953 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 1-148
Cow position: chr24:40428353-40428503 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 123
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 49, 0

Conread position: 1-166
Cow position: chr24:20604090-20603922 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 140
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 49, 0

Conread position: 1-166
Cow position: chr24:22047728-22047894 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 139
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 49, 90

Conread position: 1-167
Cow position: chr24:17161637-17161806 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 141
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 49, 0

Conread position: 1-204
Cow position: chr24:5990846-5991047 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 161
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 58, 12

Conread position: 1-204
Cow position: chr24:26412388-26412188 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 159
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 59, 12

Conread position: 1-215
Cow position: chr24:3793823-3793609 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 171
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 49, 102

Conread position: 1-215
Cow position: chr24:6035840-6036056 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 171
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 49, 171

Conread position: 1-224
Cow position: chr24:12119621-12119844 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 45, 132

Conread position: 1-224
Cow position: chr24:31381740-31381516 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 106

Conread position: 1-234
Cow position: chr24:12240214-12239983 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 57, 43

Conread position: 1-240
Cow position: chr24:6508817-6509054 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 180
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 48, 91

Conread position: 1-242
Cow position: chr24:35067436-35067677 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 49, 106

Conread position: 1-247
Cow position: chr24:25698285-25698038 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 65

Conread position: 1-259
Cow position: chr24:26388552-26388804 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 192
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 49, 106

Conread position: 1-261
Cow position: chr24:13491837-13491577 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 190
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 49, 171

Conread position: 1-262
Cow position: chr24:40467072-40467338 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-264
Cow position: chr24:9549605-9549341 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 105

Conread position: 1-268
Cow position: chr24:5929120-5928851 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr24:1841531-1841802 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr24:3162811-3162540 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 171

Conread position: 1-270
Cow position: chr24:3850936-3850665 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr24:6052423-6052155 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 12

Conread position: 1-270
Cow position: chr24:6339915-6339643 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 169

Conread position: 1-270
Cow position: chr24:6524338-6524065 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 170

Conread position: 1-270
Cow position: chr24:7597218-7597489 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr24:9546513-9546242 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr24:11208266-11208537 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr24:14194508-14194778 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 76

Conread position: 1-270
Cow position: chr24:14760234-14759964 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 121

Conread position: 1-270
Cow position: chr24:15296456-15296185 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr24:16081146-16081417 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 196
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr24:17324035-17323767 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 114

Conread position: 1-270
Cow position: chr24:18112796-18112527 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 169

Conread position: 1-270
Cow position: chr24:20367707-20367437 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 134

Conread position: 1-270
Cow position: chr24:22794900-22794629 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 171

Conread position: 1-270
Cow position: chr24:22953903-22953632 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr24:25372444-25372173 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr24:31067704-31067975 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr24:40272188-40271921 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr24:40551966-40551695 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-272
Cow position: chr24:36028174-36028446 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 43

Conread position: 1-274
Cow position: chr24:6079767-6079493 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 169

Conread position: 1-274
Cow position: chr24:6412819-6412545 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr24:8607670-8607396 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr24:12348052-12348327 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 100

Conread position: 1-274
Cow position: chr24:13374174-13374446 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 49, 171

Conread position: 1-274
Cow position: chr24:17545561-17545292 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 43

Conread position: 1-274
Cow position: chr24:20283871-20284140 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 43

Conread position: 1-274
Cow position: chr24:32361512-32361784 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 41

Conread position: 1-274
Cow position: chr24:35823864-35824134 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 154

Conread position: 1-276
Cow position: chr24:14352693-14352417 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-293
Cow position: chr24:13191502-13191216 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 49, 89

Conread position: 1-304
Cow position: chr24:9088766-9089074 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 235
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 44, 100

Conread position: 1-325
Cow position: chr24:29190629-29190305 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 2-264
Cow position: chr24:31302045-31301781 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 170

Conread position: 2-270
Cow position: chr24:6020738-6021008 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 170

Conread position: 2-270
Cow position: chr24:38813984-38813714 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 55

Conread position: 2-274
Cow position: chr24:32740573-32740841 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 199
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 58, 15

Conread position: 3-133
Cow position: chr24:15667408-15667541 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 3-200
Cow position: chr24:5653372-5653571 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 46, 169

Conread position: 3-264
Cow position: chr24:19467240-19467513 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 202
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 55, 39

Conread position: 3-267
Cow position: chr24:45086862-45086605 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 188
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 47, 103

Conread position: 3-270
Cow position: chr24:17365634-17365907 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 203
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 47, 176

Conread position: 3-270
Cow position: chr24:32608650-32608377 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 174

Conread position: 3-270
Cow position: chr24:36036487-36036756 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 169

Conread position: 3-270
Cow position: chr24:36556242-36556508 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 33

Conread position: 3-270
Cow position: chr24:36721783-36721515 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 170

Conread position: 3-274
Cow position: chr24:27148443-27148177 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 147

Conread position: 3-277
Cow position: chr24:5863016-5863288 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 41

Conread position: 4-270
Cow position: chr24:27724705-27724976 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 200
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 46, 168

Conread position: 4-272
Cow position: chr24:36779609-36779339 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 168

Conread position: 8-247
Cow position: chr24:12199032-12199273 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 42, 164

Conread position: 14-242
Cow position: chr24:17411737-17411509 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 36, 94

Conread position: 14-270
Cow position: chr24:19688251-19688509 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 158

Conread position: 16-270
Cow position: chr24:16646584-16646838 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 66

Conread position: 25-301
Cow position: chr24:37222502-37222777 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 178
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 28, 16

Show alignments to all cow chromosomes.