Cow genome map

Conread name: Mixn-0023l11

Conread position: 1-105
Cow position: chr3:579354-579248 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 1-111
Cow position: chr3:34015591-34015478 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 1-112
Cow position: chr3:64024852-64024966 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 1-125
Cow position: chr3:30623054-30622925 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 1-136
Cow position: chr3:43263456-43263593 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 95

Conread position: 1-138
Cow position: chr3:5887066-5886926 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 1-139
Cow position: chr3:26722632-26722774 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 0

Conread position: 1-139
Cow position: chr3:29311330-29311190 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 49, 134

Conread position: 1-148
Cow position: chr3:32211105-32211255 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 123
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 49, 0

Conread position: 1-155
Cow position: chr3:46753026-46752872 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 47, 106

Conread position: 1-164
Cow position: chr3:24351873-24351708 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 135
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 49, 74

Conread position: 1-164
Cow position: chr3:49416667-49416834 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 137
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 49, 0

Conread position: 1-167
Cow position: chr3:45675598-45675767 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 138
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 49, 0

Conread position: 1-167
Cow position: chr3:53674041-53674210 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 140
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 49, 0

Conread position: 1-167
Cow position: chr3:55245723-55245554 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 142
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 49, 0

Conread position: 1-167
Cow position: chr3:79668290-79668118 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 140
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 49, 0

Conread position: 1-168
Cow position: chr3:59602981-59602811 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 49, 0

Conread position: 1-186
Cow position: chr3:4191757-4191944 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 152
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 49, 171

Conread position: 1-186
Cow position: chr3:31422947-31423134 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 49, 171

Conread position: 1-186
Cow position: chr3:32768970-32768783 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 152
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 49, 171

Conread position: 1-186
Cow position: chr3:33125075-33125262 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 152
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 49, 168

Conread position: 1-186
Cow position: chr3:73451134-73451321 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 151
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 48, 168

Conread position: 1-196
Cow position: chr3:51256070-51255882 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 152
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 106, 41

Conread position: 1-203
Cow position: chr3:30351455-30351251 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 162
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 48, 171

Conread position: 1-205
Cow position: chr3:14864062-14863858 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 163
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 49, 12

Conread position: 1-205
Cow position: chr3:35109406-35109199 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 123
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 1-207
Cow position: chr3:6785497-6785288 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 123
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 49, 0

Conread position: 1-211
Cow position: chr3:64875953-64875741 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 165
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 49, 171

Conread position: 1-212
Cow position: chr3:2074962-2074750 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 158

Conread position: 1-215
Cow position: chr3:14212570-14212354 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-215
Cow position: chr3:32412306-32412522 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-215
Cow position: chr3:42508029-42508245 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-219
Cow position: chr3:23497578-23497798 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-232
Cow position: chr3:35918744-35918511 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-233
Cow position: chr3:36121355-36121121 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 49, 171

Conread position: 1-233
Cow position: chr3:36671440-36671675 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 49, 169

Conread position: 1-233
Cow position: chr3:65085114-65084880 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 49, 171

Conread position: 1-234
Cow position: chr3:49931015-49930780 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-237
Cow position: chr3:7772837-7773057 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 174
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 106, 43

Conread position: 1-237
Cow position: chr3:47986619-47986383 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-238
Cow position: chr3:37021231-37021467 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 49, 84

Conread position: 1-248
Cow position: chr3:41019134-41019383 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-258
Cow position: chr3:56336779-56337037 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 40, 69

Conread position: 1-262
Cow position: chr3:226706-226960 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 198
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 49, 56

Conread position: 1-262
Cow position: chr3:597287-597035 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 190
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 106, 160

Conread position: 1-262
Cow position: chr3:13276102-13276365 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-264
Cow position: chr3:23204498-23204758 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 12

Conread position: 1-264
Cow position: chr3:31120957-31121228 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-264
Cow position: chr3:40285136-40285401 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 72

Conread position: 1-264
Cow position: chr3:48603432-48603166 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 169

Conread position: 1-264
Cow position: chr3:50204745-50204488 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-264
Cow position: chr3:63276684-63276938 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 49, 139

Conread position: 1-265
Cow position: chr3:2921437-2921172 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-265
Cow position: chr3:20795473-20795207 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-266
Cow position: chr3:68274020-68273753 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-267
Cow position: chr3:35884941-35885202 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 189
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 49, 216

Conread position: 1-268
Cow position: chr3:20475694-20475424 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 172

Conread position: 1-269
Cow position: chr3:42977412-42977675 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 12

Conread position: 1-270
Cow position: chr3:822910-823182 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 1-270
Cow position: chr3:2572707-2572436 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:2790931-2790660 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-270
Cow position: chr3:2866475-2866746 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:5474719-5474447 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:6529172-6528901 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:6838209-6837938 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-270
Cow position: chr3:7155627-7155898 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:11417726-11417455 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:12986836-12987107 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:13035316-13035587 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:13311824-13312097 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 173

Conread position: 1-270
Cow position: chr3:13723532-13723804 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 1-270
Cow position: chr3:14054453-14054182 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:15416646-15416375 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:18862620-18862350 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:19797972-19798243 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:19881229-19880958 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:19942072-19941800 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 198
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 49, 169

Conread position: 1-270
Cow position: chr3:20379537-20379808 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:21593464-21593193 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:22339088-22338817 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:24265378-24265111 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 114

Conread position: 1-270
Cow position: chr3:24586051-24586321 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 196
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 49, 76

Conread position: 1-270
Cow position: chr3:27547269-27547537 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 52, 100

Conread position: 1-270
Cow position: chr3:28435519-28435790 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 174

Conread position: 1-270
Cow position: chr3:29130274-29130005 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 195
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 49, 74

Conread position: 1-270
Cow position: chr3:29573946-29574217 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-270
Cow position: chr3:31021862-31021591 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:32490533-32490804 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:34503943-34504214 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:35342830-35342559 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:37280575-37280304 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:37894011-37893742 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:40049069-40048798 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:40520760-40521031 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:43525559-43525830 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 171

Conread position: 1-270
Cow position: chr3:44926993-44926723 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 90

Conread position: 1-270
Cow position: chr3:46858104-46858374 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 158

Conread position: 1-270
Cow position: chr3:47078433-47078705 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 172

Conread position: 1-270
Cow position: chr3:48846185-48845915 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 84

Conread position: 1-270
Cow position: chr3:49564196-49563920 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 124

Conread position: 1-270
Cow position: chr3:49605262-49605530 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 90

Conread position: 1-270
Cow position: chr3:49907853-49908114 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 193
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 49, 106

Conread position: 1-270
Cow position: chr3:49999316-49999047 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-270
Cow position: chr3:53880087-53880358 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 171

Conread position: 1-270
Cow position: chr3:56297564-56297293 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:56485080-56485351 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:65178189-65177919 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 84

Conread position: 1-270
Cow position: chr3:66888018-66888287 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 12

Conread position: 1-270
Cow position: chr3:66968699-66968970 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:68510156-68510427 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 171

Conread position: 1-270
Cow position: chr3:68717530-68717801 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:68870570-68870841 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:72175126-72175394 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-270
Cow position: chr3:73637060-73636790 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 81

Conread position: 1-270
Cow position: chr3:74060649-74060381 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 139

Conread position: 1-270
Cow position: chr3:76864611-76864340 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-271
Cow position: chr3:50921219-50920946 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-272
Cow position: chr3:21179079-21179352 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-273
Cow position: chr3:36874881-36875160 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-273
Cow position: chr3:42846524-42846260 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 40

Conread position: 1-274
Cow position: chr3:7476740-7477015 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr3:10243839-10243567 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 105

Conread position: 1-274
Cow position: chr3:19753555-19753821 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 43

Conread position: 1-274
Cow position: chr3:24442923-24443188 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 114

Conread position: 1-274
Cow position: chr3:24572987-24573255 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 199
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 48, 159

Conread position: 1-274
Cow position: chr3:33269411-33269144 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr3:37972214-37971949 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 163

Conread position: 1-274
Cow position: chr3:38096079-38095805 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr3:39856643-39856369 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 168

Conread position: 1-274
Cow position: chr3:40336966-40337237 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-274
Cow position: chr3:43190090-43190364 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 73

Conread position: 1-274
Cow position: chr3:45977679-45977408 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 12

Conread position: 1-274
Cow position: chr3:47272699-47272974 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 169

Conread position: 1-274
Cow position: chr3:49134357-49134631 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr3:56148472-56148199 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-274
Cow position: chr3:56645151-56645425 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr3:61173674-61173400 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 12

Conread position: 1-274
Cow position: chr3:64317929-64317646 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 178

Conread position: 1-274
Cow position: chr3:64376531-64376803 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 149

Conread position: 1-274
Cow position: chr3:72633253-72632978 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr3:75038662-75038936 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-274
Cow position: chr3:78024256-78024524 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 137

Conread position: 1-274
Cow position: chr3:81101258-81100986 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 168

Conread position: 1-277
Cow position: chr3:22724592-22724868 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 194
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 59, 68

Conread position: 1-277
Cow position: chr3:64653848-64653572 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 170

Conread position: 1-299
Cow position: chr3:33691870-33692181 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 200
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 49, 171

Conread position: 1-301
Cow position: chr3:6897007-6896695 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 221
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 48, 107

Conread position: 1-301
Cow position: chr3:78520227-78519932 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-312
Cow position: chr3:14680267-14679950 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-326
Cow position: chr3:49611028-49611354 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-340
Cow position: chr3:26742693-26743035 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 171

Conread position: 1-393
Cow position: chr3:43084423-43084017 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 172

Conread position: 2-141
Cow position: chr3:42186648-42186506 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 2-144
Cow position: chr3:14558459-14558611 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 2-182
Cow position: chr3:54863444-54863624 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 54, 141

Conread position: 2-263
Cow position: chr3:6689006-6688732 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 198
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 48, 181

Conread position: 2-263
Cow position: chr3:48272960-48272695 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 172

Conread position: 2-267
Cow position: chr3:64698004-64697744 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 53, 139

Conread position: 2-270
Cow position: chr3:66736393-66736656 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 194
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 48, 88

Conread position: 2-270
Cow position: chr3:68889393-68889663 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 170

Conread position: 2-270
Cow position: chr3:76000784-76001046 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 11

Conread position: 2-273
Cow position: chr3:66623390-66623120 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 8

Conread position: 2-293
Cow position: chr3:31224457-31224165 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 42

Conread position: 3-161
Cow position: chr3:36571318-36571158 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 39, 70

Conread position: 3-203
Cow position: chr3:2432475-2432676 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 160
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 43, 169

Conread position: 3-214
Cow position: chr3:63238852-63239063 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 168
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 55, 39

Conread position: 3-215
Cow position: chr3:56697026-56696812 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 47, 169

Conread position: 3-241
Cow position: chr3:27454755-27454997 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 169

Conread position: 3-246
Cow position: chr3:34557192-34557436 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 186
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 169

Conread position: 3-264
Cow position: chr3:58950639-58950376 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 169

Conread position: 3-267
Cow position: chr3:18759243-18759510 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 172

Conread position: 3-267
Cow position: chr3:49463382-49463641 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 197
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 103, 41

Conread position: 3-268
Cow position: chr3:48240430-48240163 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 169

Conread position: 3-270
Cow position: chr3:13115259-13115527 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 169

Conread position: 3-270
Cow position: chr3:45184807-45185074 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 103

Conread position: 3-270
Cow position: chr3:50346993-50346728 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 205
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 95, 42

Conread position: 3-270
Cow position: chr3:54653997-54654268 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 111

Conread position: 3-270
Cow position: chr3:70914085-70914355 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 170

Conread position: 3-274
Cow position: chr3:7856599-7856331 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 196
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 51, 9

Conread position: 3-274
Cow position: chr3:66829761-66830033 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 200
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 165

Conread position: 3-301
Cow position: chr3:15656133-15656431 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 212
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 47, 168

Conread position: 4-215
Cow position: chr3:49732619-49732831 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 166
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 46, 167

Conread position: 4-230
Cow position: chr3:77550145-77549923 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 155
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 167

Conread position: 4-264
Cow position: chr3:57456135-57455878 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 168

Conread position: 4-270
Cow position: chr3:6714184-6713916 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 168

Conread position: 4-293
Cow position: chr3:77581774-77581493 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 52, 91

Conread position: 5-145
Cow position: chr3:6729605-6729748 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 45, 0

Conread position: 5-255
Cow position: chr3:302407-302155 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 167

Conread position: 5-270
Cow position: chr3:68696789-68697056 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 167

Conread position: 6-264
Cow position: chr3:54766178-54765924 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 186
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 44, 84

Conread position: 6-273
Cow position: chr3:32220901-32220630 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 93

Conread position: 9-270
Cow position: chr3:25689829-25689564 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 196
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 41, 162

Conread position: 13-265
Cow position: chr3:83700152-83700406 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 179
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 39, 31

Conread position: 14-276
Cow position: chr3:28094303-28094040 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 59

Conread position: 23-277
Cow position: chr3:32838514-32838260 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 172
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 9

Show alignments to all cow chromosomes.