Cow genome map

Conread name: Mixn-0035g19

Conread position: 8-123
Cow position: chrX:11582536-11582421 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 19

Conread position: 8-219
Cow position: chrX:36039653-36039455 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 46, 15

Conread position: 8-234
Cow position: chrX:27667680-27667466 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 165
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 40, 0

Conread position: 8-513
Cow position: chrX:9416417-9416934 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 83

Conread position: 9-123
Cow position: chrX:23265190-23265309 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 9-212
Cow position: chrX:23187312-23187530 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 37, 10

Conread position: 9-219
Cow position: chrX:41940088-41939879 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 40, 80

Conread position: 9-310
Cow position: chrX:37129537-37129235 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 123

Conread position: 9-435
Cow position: chrX:29680007-29680422 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 46

Conread position: 9-670
Cow position: chrX:40480608-40481267 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 81

Conread position: 9-679
Cow position: chrX:5872573-5871909 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 81

Conread position: 10-123
Cow position: chrX:7910836-7910950 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 15

Conread position: 10-194
Cow position: chrX:42482553-42482754 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 41, 9

Conread position: 10-219
Cow position: chrX:12255067-12255262 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 38, 0

Conread position: 10-277
Cow position: chrX:31829205-31829463 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 193
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 43, 20

Conread position: 10-315
Cow position: chrX:40531788-40532081 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 210
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 37, 78

Conread position: 10-348
Cow position: chrX:19096956-19097300 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 242
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 43, 75

Conread position: 10-512
Cow position: chrX:23513765-23514258 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 10

Conread position: 10-539
Cow position: chrX:17726254-17725711 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 279

Conread position: 11-670
Cow position: chrX:878113-878766 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 74

Conread position: 11-677
Cow position: chrX:12250052-12249395 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 70

Conread position: 12-141
Cow position: chrX:32975854-32975990 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 111
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 12-219
Cow position: chrX:2742068-2742285 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 174
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 75, 8

Conread position: 12-261
Cow position: chrX:753398-753166 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 184, 36

Conread position: 13-245
Cow position: chrX:4612639-4612852 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 35, 0

Conread position: 13-296
Cow position: chrX:25412154-25411889 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 205
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 35, 0

Conread position: 13-324
Cow position: chrX:31626730-31627027 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 218
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 268, 33

Conread position: 13-587
Cow position: chrX:7351535-7350987 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 7

Conread position: 14-123
Cow position: chrX:15545417-15545529 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 100
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 33, 0

Conread position: 14-125
Cow position: chrX:11195018-11194903 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 33, 75

Conread position: 14-200
Cow position: chrX:21443464-21443656 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 27

Conread position: 14-223
Cow position: chrX:25282779-25282986 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 162
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 12, 75

Conread position: 17-284
Cow position: chrX:6222860-6223138 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 188
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 71, 31

Conread position: 17-333
Cow position: chrX:41270735-41271052 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 234
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 5, 69

Conread position: 20-141
Cow position: chrX:7576874-7576752 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 66, 34

Conread position: 20-210
Cow position: chrX:23182739-23182918 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 29, 68

Conread position: 20-236
Cow position: chrX:40451840-40452045 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 161
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 33, 68

Conread position: 20-251
Cow position: chrX:37062339-37062561 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 174
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 24, 69

Conread position: 20-262
Cow position: chrX:23266653-23266428 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 20-370
Cow position: chrX:16348326-16348672 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 261
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 33, 68

Conread position: 20-413
Cow position: chrX:11084811-11085202 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 273
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 29, 114

Conread position: 20-481
Cow position: chrX:38853439-38852986 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 319
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 29, 65

Conread position: 20-509
Cow position: chrX:27771709-27772193 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 29

Conread position: 20-512
Cow position: chrX:27393790-27394254 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 28

Conread position: 20-614
Cow position: chrX:40557430-40558018 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 68

Conread position: 20-650
Cow position: chrX:31373778-31373202 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 20-662
Cow position: chrX:37489957-37489330 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 68

Conread position: 20-666
Cow position: chrX:7695991-7695372 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 70

Conread position: 20-670
Cow position: chrX:5017188-5017802 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 28

Conread position: 20-670
Cow position: chrX:37232670-37232015 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 255

Conread position: 21-242
Cow position: chrX:4592259-4592467 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 30, 57

Conread position: 22-460
Cow position: chrX:31312282-31311835 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 70

Conread position: 23-333
Cow position: chrX:15820830-15820542 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 207
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 13

Conread position: 24-122
Cow position: chrX:29328039-29327940 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 87
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 23, 62

Conread position: 24-236
Cow position: chrX:23574912-23574694 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 23, 179

Conread position: 24-309
Cow position: chrX:23498439-23498709 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 145, 30

Conread position: 24-356
Cow position: chrX:39220312-39219994 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 227
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 66

Conread position: 24-403
Cow position: chrX:616015-616397 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 271
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 64

Conread position: 25-339
Cow position: chrX:23562889-23562566 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 231
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 30, 257

Conread position: 25-695
Cow position: chrX:40269731-40269059 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 47

Conread position: 26-219
Cow position: chrX:43014438-43014617 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 21, 60

Conread position: 26-253
Cow position: chrX:27296275-27296506 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 172
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 18, 68

Conread position: 28-677
Cow position: chrX:18694702-18695332 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 27

Conread position: 32-209
Cow position: chrX:9855907-9855733 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 15, 103

Conread position: 35-509
Cow position: chrX:6690030-6690485 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 13

Conread position: 41-650
Cow position: chrX:25035148-25035762 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 72

Conread position: 52-458
Cow position: chrX:42235299-42235722 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 285
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 33, 92

Conread position: 70-249
Cow position: chrX:10279079-10278896 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 20, 149

Conread position: 70-504
Cow position: chrX:38549650-38549216 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 36

Conread position: 70-679
Cow position: chrX:46532286-46532928 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 79

Conread position: 72-277
Cow position: chrX:16575313-16575110 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 31, 0

Conread position: 73-404
Cow position: chrX:37956048-37955697 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 238
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 14, 39

Conread position: 74-323
Cow position: chrX:44702866-44703117 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 174
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 38

Conread position: 74-460
Cow position: chrX:43730024-43730405 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 57

Conread position: 74-670
Cow position: chrX:21593491-21592890 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 142

Conread position: 74-679
Cow position: chrX:34238922-34238312 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 38

Conread position: 75-246
Cow position: chrX:34270759-34270592 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 12, 54

Conread position: 75-287
Cow position: chrX:29478920-29478713 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 12, 37

Conread position: 75-295
Cow position: chrX:42449815-42450033 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 12, 37

Conread position: 75-333
Cow position: chrX:42855661-42855400 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 12, 241

Conread position: 75-356
Cow position: chrX:33654645-33654931 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 12, 37

Conread position: 75-484
Cow position: chrX:12979637-12980045 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 16

Conread position: 75-487
Cow position: chrX:29601631-29602050 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 30

Conread position: 75-487
Cow position: chrX:36283538-36283128 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 278
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 15, 37

Conread position: 75-514
Cow position: chrX:40035241-40035693 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 302
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 15, 30

Conread position: 75-543
Cow position: chrX:27508826-27509292 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 37

Conread position: 75-560
Cow position: chrX:31294371-31294828 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 68

Conread position: 75-568
Cow position: chrX:33466823-33466321 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 38

Conread position: 75-664
Cow position: chrX:34441255-34441837 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 30

Conread position: 75-665
Cow position: chrX:42246983-42247566 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 30

Conread position: 75-668
Cow position: chrX:23122594-23121990 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 75-670
Cow position: chrX:13868902-13868301 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 30

Conread position: 75-670
Cow position: chrX:28632284-28632873 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 34

Conread position: 75-670
Cow position: chrX:44055001-44054408 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 42

Conread position: 78-299
Cow position: chrX:38587647-38587865 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 148
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 12, 27

Conread position: 78-669
Cow position: chrX:15147002-15147576 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 31

Conread position: 78-679
Cow position: chrX:10865675-10866275 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 31

Conread position: 81-365
Cow position: chrX:4109377-4109103 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 28

Conread position: 81-504
Cow position: chrX:36976144-36975717 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 24

Conread position: 81-690
Cow position: chrX:27705778-27705181 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 23

Conread position: 81-695
Cow position: chrX:15329836-15329236 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 13

Conread position: 82-454
Cow position: chrX:36068207-36067835 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 250
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 221, 47

Conread position: 83-386
Cow position: chrX:5679383-5679684 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 203
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 228, 20

Conread position: 83-554
Cow position: chrX:37836768-37836307 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 7

Conread position: 83-648
Cow position: chrX:11717592-11718152 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 48

Conread position: 83-670
Cow position: chrX:3130764-3130169 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 39

Conread position: 83-670
Cow position: chrX:28865815-28866383 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 28

Conread position: 84-253
Cow position: chrX:15166256-15166088 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 49, 137

Conread position: 84-260
Cow position: chrX:25459538-25459720 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 85, 131

Conread position: 84-324
Cow position: chrX:38208355-38208589 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 163
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 25, 14

Conread position: 85-252
Cow position: chrX:28098519-28098349 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 120
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 85-305
Cow position: chrX:20743796-20743575 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 44, 200

Conread position: 85-670
Cow position: chrX:8797438-8796855 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 46

Conread position: 86-399
Cow position: chrX:9365484-9365806 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 229
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 17, 192

Conread position: 86-609
Cow position: chrX:43527700-43527165 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 24

Conread position: 86-695
Cow position: chrX:38226915-38227509 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 92

Conread position: 89-239
Cow position: chrX:27270562-27270411 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 43

Conread position: 90-218
Cow position: chrX:16481386-16481514 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 122, 42

Conread position: 93-670
Cow position: chrX:42171114-42171695 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 55

Conread position: 94-256
Cow position: chrX:10076155-10075992 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 147

Conread position: 94-512
Cow position: chrX:618830-619248 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 37

Conread position: 94-586
Cow position: chrX:33640153-33639654 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 35

Conread position: 96-670
Cow position: chrX:27516696-27516138 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 35

Conread position: 97-460
Cow position: chrX:23785825-23785463 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 93

Conread position: 98-223
Cow position: chrX:7107679-7107554 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 99-650
Cow position: chrX:7278081-7277554 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 9

Conread position: 101-452
Cow position: chrX:32821202-32820847 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 255
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 12, 29

Conread position: 101-486
Cow position: chrX:6278325-6278722 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 30

Conread position: 101-647
Cow position: chrX:34503090-34502550 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 8

Conread position: 101-669
Cow position: chrX:4043694-4044253 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 30

Conread position: 102-278
Cow position: chrX:16409774-16409596 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 164, 32

Conread position: 103-333
Cow position: chrX:6541563-6541791 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 19, 41

Conread position: 104-261
Cow position: chrX:35285343-35285187 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 27, 0

Conread position: 104-324
Cow position: chrX:21328083-21327860 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 117, 25

Conread position: 104-350
Cow position: chrX:25037157-25036917 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 163
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 104-441
Cow position: chrX:6407713-6407377 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 28

Conread position: 104-492
Cow position: chrX:37910614-37910230 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 268
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 54, 37

Conread position: 105-526
Cow position: chrX:28878006-28878416 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 13

Conread position: 105-670
Cow position: chrX:10831319-10831908 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 25

Conread position: 107-218
Cow position: chrX:47100432-47100540 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 107-240
Cow position: chrX:41435382-41435512 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 107-272
Cow position: chrX:38968057-38967891 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 21, 93

Conread position: 107-338
Cow position: chrX:44339158-44339384 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 157
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 25, 0

Conread position: 107-441
Cow position: chrX:169379-169697 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 235
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 209, 24

Conread position: 108-259
Cow position: chrX:48558912-48558762 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 108-503
Cow position: chrX:22822212-22821816 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 27

Conread position: 109-261
Cow position: chrX:24170565-24170715 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 109-276
Cow position: chrX:33204806-33204970 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 21, 0

Conread position: 109-276
Cow position: chrX:34420898-34420733 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 6, 0

Conread position: 109-417
Cow position: chrX:27228291-27227974 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 223
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 59, 19

Conread position: 109-465
Cow position: chrX:47484100-47484467 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 242
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 201, 21

Conread position: 109-490
Cow position: chrX:28013276-28013661 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 261
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 128, 177

Conread position: 109-526
Cow position: chrX:25815737-25816150 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 22

Conread position: 109-650
Cow position: chrX:41790265-41790813 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 31

Conread position: 110-607
Cow position: chrX:38006606-38007103 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 37

Conread position: 110-670
Cow position: chrX:35269025-35268497 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 21

Conread position: 111-247
Cow position: chrX:2314456-2314591 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 111-253
Cow position: chrX:40337073-40336933 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 105
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 111-256
Cow position: chrX:20345613-20345472 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 111-261
Cow position: chrX:1122384-1122529 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 111-278
Cow position: chrX:23335813-23335975 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 111-279
Cow position: chrX:13122106-13121934 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 47, 30

Conread position: 111-288
Cow position: chrX:32574480-32574303 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 164, 19

Conread position: 111-288
Cow position: chrX:35276148-35275975 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 111-324
Cow position: chrX:6259987-6260194 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 145
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 111-333
Cow position: chrX:40680777-40680556 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 19, 0

Conread position: 111-359
Cow position: chrX:43150593-43150340 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 171
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 125, 19

Conread position: 111-360
Cow position: chrX:20168720-20168473 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 215, 18

Conread position: 111-384
Cow position: chrX:24331939-24331662 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 205, 19

Conread position: 111-407
Cow position: chrX:41027322-41027018 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 205, 21

Conread position: 111-478
Cow position: chrX:27175161-27174786 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 270
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 184, 19

Conread position: 111-479
Cow position: chrX:32330333-32329951 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 272
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 69, 20

Conread position: 111-490
Cow position: chrX:47046351-47046739 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 272
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 205, 19

Conread position: 111-552
Cow position: chrX:8731256-8730799 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 20

Conread position: 111-575
Cow position: chrX:30133158-30133627 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 20

Conread position: 111-598
Cow position: chrX:26493169-26492676 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 23

Conread position: 111-607
Cow position: chrX:15546044-15545562 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 20

Conread position: 111-620
Cow position: chrX:42492361-42492878 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 20

Conread position: 111-635
Cow position: chrX:5118336-5118844 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 367
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 57, 19

Conread position: 111-644
Cow position: chrX:31250551-31250022 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 19

Conread position: 111-648
Cow position: chrX:4632692-4633224 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 23

Conread position: 111-670
Cow position: chrX:12309223-12309782 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 19

Conread position: 111-670
Cow position: chrX:24287771-24288309 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 19

Conread position: 111-670
Cow position: chrX:27446849-27446295 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 18

Conread position: 111-670
Cow position: chrX:44192281-44192838 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 19

Conread position: 111-679
Cow position: chrX:14599695-14599128 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 19

Conread position: 111-679
Cow position: chrX:41878771-41879338 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 19

Conread position: 111-694
Cow position: chrX:20339731-20340309 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 20

Conread position: 111-694
Cow position: chrX:27442376-27442972 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 23

Conread position: 112-245
Cow position: chrX:4092086-4091954 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 112-278
Cow position: chrX:11859375-11859540 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 79, 0

Conread position: 112-389
Cow position: chrX:18111540-18111269 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 190
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 190, 18

Conread position: 112-389
Cow position: chrX:40320568-40320284 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 187
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 195, 18

Conread position: 112-392
Cow position: chrX:27945892-27946183 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 193
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 204, 19

Conread position: 112-404
Cow position: chrX:7710375-7710679 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 206
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 5, 164

Conread position: 112-414
Cow position: chrX:18204301-18204609 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 219
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 102, 18

Conread position: 112-476
Cow position: chrX:16996654-16996300 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 255
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 154, 18

Conread position: 112-506
Cow position: chrX:48010766-48010360 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 270
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 202, 18

Conread position: 112-512
Cow position: chrX:38935440-38935041 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 18

Conread position: 112-545
Cow position: chrX:40183193-40183623 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 19

Conread position: 112-601
Cow position: chrX:34454820-34454345 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 18

Conread position: 112-638
Cow position: chrX:34662685-34663224 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 19

Conread position: 112-664
Cow position: chrX:31948773-31949320 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 18

Conread position: 112-678
Cow position: chrX:1055220-1055800 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 18

Conread position: 112-695
Cow position: chrX:40826589-40827162 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 18

Conread position: 113-256
Cow position: chrX:32877214-32877356 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 113-323
Cow position: chrX:34222873-34222669 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 113-333
Cow position: chrX:12095611-12095828 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 125, 17

Conread position: 113-358
Cow position: chrX:27261353-27261105 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 99, 19

Conread position: 113-392
Cow position: chrX:10516414-10516131 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 199
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 213, 18

Conread position: 113-448
Cow position: chrX:31252568-31252239 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 231
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 52, 17

Conread position: 113-476
Cow position: chrX:46587983-46587611 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 18

Conread position: 113-512
Cow position: chrX:38642409-38642020 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 18

Conread position: 113-526
Cow position: chrX:24365662-24366083 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 296
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 157, 19

Conread position: 113-591
Cow position: chrX:47873176-47873660 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 17

Conread position: 113-668
Cow position: chrX:34754015-34754586 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 30

Conread position: 113-677
Cow position: chrX:15485473-15486031 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 17

Conread position: 113-679
Cow position: chrX:31489681-31489104 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 16

Conread position: 113-694
Cow position: chrX:12290880-12290317 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 17

Conread position: 113-695
Cow position: chrX:34554884-34554318 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 17

Conread position: 114-441
Cow position: chrX:46433652-46433311 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 244
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 202, 161

Conread position: 114-445
Cow position: chrX:4278957-4279290 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 220
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 200, 147

Conread position: 114-553
Cow position: chrX:16762933-16762491 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 15

Conread position: 114-571
Cow position: chrX:1175830-1176273 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 16

Conread position: 114-638
Cow position: chrX:47344456-47343928 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 16

Conread position: 114-648
Cow position: chrX:11844079-11844612 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 305

Conread position: 115-252
Cow position: chrX:13924023-13923887 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 115-484
Cow position: chrX:34412005-34411625 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 258
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 169, 16

Conread position: 115-502
Cow position: chrX:35543046-35542661 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 276
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 195, 16

Conread position: 115-509
Cow position: chrX:4768890-4768513 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 273
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 202, 13

Conread position: 115-511
Cow position: chrX:22074959-22074559 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 281
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 92, 15

Conread position: 115-534
Cow position: chrX:27431759-27432180 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 15

Conread position: 115-670
Cow position: chrX:34377101-34376558 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 15

Conread position: 116-324
Cow position: chrX:46546717-46546923 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 116-408
Cow position: chrX:48646449-48646740 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 191
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 223, 14

Conread position: 116-440
Cow position: chrX:22921478-22921143 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 221
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 148, 16

Conread position: 116-446
Cow position: chrX:47165727-47166061 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 227
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 29, 14

Conread position: 116-487
Cow position: chrX:21642324-21642695 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 259
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 198, 14

Conread position: 116-512
Cow position: chrX:34543942-34543547 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 15

Conread position: 116-519
Cow position: chrX:17888265-17888652 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 15

Conread position: 116-670
Cow position: chrX:32420368-32419793 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 14

Conread position: 116-670
Cow position: chrX:38964266-38963717 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 13

Conread position: 116-695
Cow position: chrX:13177318-13177877 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 15

Conread position: 117-251
Cow position: chrX:16763768-16763903 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 104, 13

Conread position: 117-256
Cow position: chrX:19761911-19761773 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 117-261
Cow position: chrX:39180077-39180219 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 117-274
Cow position: chrX:35392141-35392291 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 117-278
Cow position: chrX:26205292-26205451 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 117-323
Cow position: chrX:4645758-4645957 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 117-398
Cow position: chrX:45875548-45875261 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 195
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 199, 13

Conread position: 117-433
Cow position: chrX:41068882-41068564 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 222
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 169, 15

Conread position: 117-439
Cow position: chrX:35885570-35885899 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 219
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 187, 14

Conread position: 117-473
Cow position: chrX:29544720-29545083 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 17

Conread position: 117-492
Cow position: chrX:6265442-6265809 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 246
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 232, 14

Conread position: 117-608
Cow position: chrX:43115309-43114836 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 38

Conread position: 117-647
Cow position: chrX:20697454-20697977 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 13

Conread position: 117-650
Cow position: chrX:7179051-7178532 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 13

Conread position: 117-670
Cow position: chrX:20887483-20888040 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 12

Conread position: 117-670
Cow position: chrX:31729599-31729062 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 14

Conread position: 117-670
Cow position: chrX:38094364-38094921 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 14

Conread position: 118-246
Cow position: chrX:46909971-46909844 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 118-279
Cow position: chrX:11653926-11653760 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 93, 13

Conread position: 120-333
Cow position: chrX:27511582-27511372 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 187, 11

Conread position: 122-314
Cow position: chrX:42894079-42893881 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 118, 0

Conread position: 122-397
Cow position: chrX:38728886-38728608 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 203
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 194, 19

Conread position: 123-620
Cow position: chrX:31442677-31443169 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 167

Conread position: 126-470
Cow position: chrX:43779703-43780053 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 248
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 167, 41

Conread position: 126-491
Cow position: chrX:10959248-10959625 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 257
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 95, 9

Conread position: 129-256
Cow position: chrX:41810022-41810149 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 129-477
Cow position: chrX:3580090-3579737 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 153

Conread position: 129-492
Cow position: chrX:4865376-4865028 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 239
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 168, 23

Conread position: 130-261
Cow position: chrX:47342260-47342130 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 130-268
Cow position: chrX:1719260-1719122 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 101
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 130-281
Cow position: chrX:38725953-38725803 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 109
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 95, 0

Conread position: 130-460
Cow position: chrX:8869256-8869599 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 233
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 37, 132

Conread position: 130-621
Cow position: chrX:31436619-31436131 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 29

Conread position: 130-621
Cow position: chrX:32170744-32171230 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 90

Conread position: 130-666
Cow position: chrX:11656226-11655685 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 145

Conread position: 130-670
Cow position: chrX:24424256-24424788 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 131

Conread position: 130-695
Cow position: chrX:37072534-37071983 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 123

Conread position: 131-333
Cow position: chrX:22914898-22915091 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 131-408
Cow position: chrX:11614837-11614559 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 196
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 181, 70

Conread position: 131-465
Cow position: chrX:37780964-37781313 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 239
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 38, 164

Conread position: 131-478
Cow position: chrX:45110800-45110447 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 232
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 21

Conread position: 131-503
Cow position: chrX:5900606-5900226 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 265
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 185, 83

Conread position: 131-511
Cow position: chrX:45598461-45598843 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 256
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 181, 94

Conread position: 131-664
Cow position: chrX:38218860-38218328 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 98

Conread position: 131-668
Cow position: chrX:161555-161034 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 24

Conread position: 131-670
Cow position: chrX:13647641-13648180 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 99

Conread position: 131-670
Cow position: chrX:15007006-15007547 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 20

Conread position: 131-671
Cow position: chrX:17795127-17794598 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 250

Conread position: 132-516
Cow position: chrX:45174994-45174600 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 263
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 9, 135

Conread position: 132-570
Cow position: chrX:41238212-41238661 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 82

Conread position: 132-612
Cow position: chrX:17964379-17964855 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 318
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 29, 22

Conread position: 132-670
Cow position: chrX:11073049-11073607 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 9

Conread position: 133-277
Cow position: chrX:41941765-41941621 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 133-482
Cow position: chrX:33001048-33000692 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 247
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 26, 151

Conread position: 133-490
Cow position: chrX:11633823-11633458 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 8

Conread position: 133-668
Cow position: chrX:23583703-23583164 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 128

Conread position: 134-314
Cow position: chrX:29553426-29553249 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 125
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 141, 0

Conread position: 134-373
Cow position: chrX:1360230-1359991 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 87, 156

Conread position: 134-650
Cow position: chrX:2301065-2300549 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 52

Conread position: 134-670
Cow position: chrX:45968289-45967765 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 119

Conread position: 135-280
Cow position: chrX:3806822-3806677 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 135-491
Cow position: chrX:1503467-1503117 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 250
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 181, 86

Conread position: 135-512
Cow position: chrX:33493916-33493535 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 255
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 179, 78

Conread position: 135-606
Cow position: chrX:7646396-7645924 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 131

Conread position: 135-668
Cow position: chrX:14973606-14974129 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 90

Conread position: 135-670
Cow position: chrX:32743673-32743142 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 28

Conread position: 135-670
Cow position: chrX:34565423-34564904 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 20

Conread position: 135-679
Cow position: chrX:45113761-45113228 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 163

Conread position: 136-491
Cow position: chrX:46072678-46073044 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 256
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 149, 138

Conread position: 136-670
Cow position: chrX:41123198-41122675 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 100

Conread position: 140-668
Cow position: chrX:917233-917770 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 108

Conread position: 140-668
Cow position: chrX:11082487-11083008 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 154

Conread position: 141-531
Cow position: chrX:20151990-20151591 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 286
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 129, 79

Conread position: 143-417
Cow position: chrX:34315653-34315381 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 185
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 66, 210

Conread position: 143-458
Cow position: chrX:7162188-7161883 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 213
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 171, 71

Conread position: 143-577
Cow position: chrX:45414172-45414605 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 118

Conread position: 143-614
Cow position: chrX:47481928-47481458 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 324
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 173, 77

Conread position: 143-668
Cow position: chrX:6544386-6543862 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 30

Conread position: 144-487
Cow position: chrX:37574971-37574639 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 227
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 133, 122

Conread position: 144-513
Cow position: chrX:1514288-1514645 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 264
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 172, 69

Conread position: 144-695
Cow position: chrX:42469810-42470354 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 153

Conread position: 145-563
Cow position: chrX:4268934-4269358 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 130

Conread position: 145-629
Cow position: chrX:19690345-19689860 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 103

Conread position: 145-679
Cow position: chrX:7572037-7571495 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 132

Conread position: 146-505
Cow position: chrX:7722118-7721748 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 263
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 27, 75

Conread position: 150-404
Cow position: chrX:22453973-22454228 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 177
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 191, 64

Conread position: 150-465
Cow position: chrX:40809818-40809491 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 218
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 142, 281

Conread position: 150-472
Cow position: chrX:7863456-7863776 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 217
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 135, 145

Conread position: 151-679
Cow position: chrX:30179811-30180334 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 86

Conread position: 152-396
Cow position: chrX:45005746-45005502 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 158, 6

Conread position: 152-468
Cow position: chrX:47300781-47301102 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 223
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 162, 6

Conread position: 152-469
Cow position: chrX:45149290-45148975 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 213
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 187, 6

Conread position: 152-469
Cow position: chrX:47302755-47303079 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 220
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 159, 6

Conread position: 152-529
Cow position: chrX:48652599-48652988 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 274
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 158, 6

Conread position: 152-542
Cow position: chrX:45403703-45404104 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 6

Conread position: 152-558
Cow position: chrX:46722612-46723027 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 6

Conread position: 152-571
Cow position: chrX:44834674-44835115 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 6

Conread position: 152-624
Cow position: chrX:45089568-45089086 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 6

Conread position: 152-668
Cow position: chrX:44736878-44737385 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 345
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 133, 6

Conread position: 152-670
Cow position: chrX:26625548-26626085 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 213

Conread position: 154-492
Cow position: chrX:11856551-11856206 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 131

Conread position: 162-512
Cow position: chrX:21004797-21004444 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 250
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 155, 225

Conread position: 162-614
Cow position: chrX:47967720-47967258 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 237

Conread position: 167-508
Cow position: chrX:15815191-15814861 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 243
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 158, 13

Conread position: 167-670
Cow position: chrX:35224404-35223906 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 108

Conread position: 172-510
Cow position: chrX:27680501-27680165 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 240
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 140, 163

Conread position: 172-636
Cow position: chrX:38936803-38936337 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 61

Conread position: 176-695
Cow position: chrX:26440686-26441197 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 45

Conread position: 177-412
Cow position: chrX:27685347-27685103 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 106

Conread position: 177-553
Cow position: chrX:2467982-2467599 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 116

Conread position: 179-509
Cow position: chrX:9041148-9041469 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 218
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 242, 96

Conread position: 179-597
Cow position: chrX:5638073-5638493 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 96

Conread position: 185-431
Cow position: chrX:12405291-12405550 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 185
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 109, 237

Conread position: 185-677
Cow position: chrX:625970-626450 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 20

Conread position: 185-679
Cow position: chrX:29943243-29942741 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 328
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 46, 88

Conread position: 189-670
Cow position: chrX:24105710-24105231 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 105

Conread position: 190-666
Cow position: chrX:42507563-42508035 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 80

Conread position: 198-679
Cow position: chrX:8900098-8899617 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 7

Conread position: 207-670
Cow position: chrX:1810092-1810555 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 176

Conread position: 222-647
Cow position: chrX:28105971-28105553 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 60

Conread position: 227-670
Cow position: chrX:13785312-13785774 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 328
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 39, 60

Conread position: 227-694
Cow position: chrX:42461696-42462168 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 48

Conread position: 228-650
Cow position: chrX:41199155-41198710 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 55

Conread position: 228-670
Cow position: chrX:42994660-42994218 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 47

Conread position: 230-670
Cow position: chrX:11581979-11581541 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 46

Conread position: 230-670
Cow position: chrX:17498130-17497700 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 53

Conread position: 241-679
Cow position: chrX:12116081-12115633 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 43

Conread position: 250-553
Cow position: chrX:23497642-23497946 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 66, 25

Conread position: 252-679
Cow position: chrX:27319236-27318808 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 259
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 99, 17

Conread position: 255-670
Cow position: chrX:20583042-20582634 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 20

Conread position: 266-668
Cow position: chrX:3653771-3653371 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 17

Conread position: 276-670
Cow position: chrX:47379463-47379863 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 151

Conread position: 276-695
Cow position: chrX:10437666-10438068 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 41

Conread position: 287-668
Cow position: chrX:30837359-30836979 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 265
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 29, 34

Conread position: 294-670
Cow position: chrX:42086841-42086466 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 118

Conread position: 303-679
Cow position: chrX:23386580-23386947 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 261
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 19, 24

Conread position: 311-670
Cow position: chrX:21665633-21665987 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 112

Conread position: 317-592
Cow position: chrX:14924954-14924680 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 106

Conread position: 317-668
Cow position: chrX:35609942-35609592 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 45

Conread position: 317-670
Cow position: chrX:3417182-3417535 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 246
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 25, 49

Conread position: 317-670
Cow position: chrX:38967601-38967255 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 47

Conread position: 317-695
Cow position: chrX:4123791-4123419 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 320-670
Cow position: chrX:35409608-35409272 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 87

Conread position: 320-670
Cow position: chrX:36249911-36250258 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 44

Conread position: 320-672
Cow position: chrX:29848678-29849030 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 44

Conread position: 321-667
Cow position: chrX:32978308-32978650 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 37

Conread position: 321-668
Cow position: chrX:5353351-5353697 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 243
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 14, 90

Conread position: 321-668
Cow position: chrX:16711905-16711560 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 41

Conread position: 321-670
Cow position: chrX:30143334-30143680 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 21

Conread position: 321-679
Cow position: chrX:5376321-5375961 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 90

Conread position: 322-668
Cow position: chrX:16853435-16853783 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 39

Conread position: 322-679
Cow position: chrX:7550846-7551203 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 250
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 13, 39

Conread position: 324-695
Cow position: chrX:24441296-24441667 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 256
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 89

Conread position: 333-670
Cow position: chrX:44908255-44907920 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 232
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 14, 69

Conread position: 334-679
Cow position: chrX:24587517-24587862 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 26

Conread position: 335-666
Cow position: chrX:30823452-30823124 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 25

Conread position: 335-668
Cow position: chrX:11949561-11949887 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 335-668
Cow position: chrX:20877827-20878156 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 25

Conread position: 335-668
Cow position: chrX:21833821-21833491 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 25

Conread position: 335-668
Cow position: chrX:29915290-29915619 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 235
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 88, 25

Conread position: 335-679
Cow position: chrX:18077974-18078318 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 27

Conread position: 335-679
Cow position: chrX:18897720-18898059 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 25

Conread position: 335-679
Cow position: chrX:23396534-23396198 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 240
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 88, 25

Conread position: 335-679
Cow position: chrX:30228175-30228518 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 26

Conread position: 335-679
Cow position: chrX:40544672-40545018 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 25

Conread position: 336-679
Cow position: chrX:23280937-23280599 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 7

Conread position: 341-670
Cow position: chrX:36196022-36195696 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 229
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 82, 21

Conread position: 342-668
Cow position: chrX:24317989-24317672 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 18

Conread position: 342-679
Cow position: chrX:30138854-30139192 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 213
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 81, 68

Conread position: 344-670
Cow position: chrX:37816516-37816192 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 230
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 49, 31

Conread position: 344-679
Cow position: chrX:5288759-5289095 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 70

Conread position: 346-667
Cow position: chrX:25458712-25459030 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 14

Conread position: 346-668
Cow position: chrX:21785688-21785374 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 346-670
Cow position: chrX:15589950-15590268 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 14

Conread position: 346-670
Cow position: chrX:38051509-38051828 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 16

Conread position: 346-671
Cow position: chrX:24125147-24125459 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 230
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 77, 14

Conread position: 346-678
Cow position: chrX:30454697-30455029 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 236
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 77, 14

Conread position: 353-679
Cow position: chrX:35240781-35240456 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 25

Conread position: 354-694
Cow position: chrX:45658160-45658500 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 240
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 84, 21

Conread position: 359-668
Cow position: chrX:5319803-5320114 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 216
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 44, 56

Conread position: 359-668
Cow position: chrX:6655354-6655660 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 51

Conread position: 359-668
Cow position: chrX:14781432-14781739 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 214
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 64, 51

Conread position: 359-668
Cow position: chrX:23316508-23316814 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 224
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 15, 53

Conread position: 359-678
Cow position: chrX:10415618-10415932 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 31

Conread position: 359-679
Cow position: chrX:22811798-22811478 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 51

Conread position: 360-668
Cow position: chrX:44930547-44930246 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 213
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 63, 50

Conread position: 360-670
Cow position: chrX:2478716-2479023 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 220
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 59, 132

Conread position: 361-695
Cow position: chrX:32870876-32871203 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 53

Conread position: 366-670
Cow position: chrX:33538849-33538531 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 226
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 114, 53

Conread position: 368-678
Cow position: chrX:41846630-41846941 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 37

Conread position: 379-695
Cow position: chrX:22115388-22115702 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 32

Conread position: 380-668
Cow position: chrX:27976936-27977223 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 209
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 5, 35

Conread position: 380-691
Cow position: chrX:12096364-12096663 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 382-650
Cow position: chrX:16721918-16722193 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 15

Conread position: 383-668
Cow position: chrX:21861785-21862064 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 27

Conread position: 383-679
Cow position: chrX:22493896-22493599 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 27

Conread position: 384-691
Cow position: chrX:47219367-47219672 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 216
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 35, 26

Conread position: 388-679
Cow position: chrX:15717796-15718085 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 44, 22

Conread position: 391-668
Cow position: chrX:21495639-21495364 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 19

Conread position: 409-677
Cow position: chrX:16078530-16078265 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 198
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 23, 57

Conread position: 412-670
Cow position: chrX:2351923-2351666 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 81

Conread position: 426-668
Cow position: chrX:24787878-24788110 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 187
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 226, 5

Conread position: 438-670
Cow position: chrX:47655132-47654908 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 171
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 23, 0

Conread position: 438-679
Cow position: chrX:42221741-42221976 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 7

Conread position: 444-680
Cow position: chrX:38066887-38067122 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 41

Conread position: 451-668
Cow position: chrX:22449738-22449520 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 155

Conread position: 451-695
Cow position: chrX:27117782-27117546 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 183
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 30, 0

Conread position: 464-670
Cow position: chrX:38852962-38852763 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 160
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 26, 0

Conread position: 468-677
Cow position: chrX:17892345-17892137 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 167
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 199, 22

Conread position: 469-668
Cow position: chrX:35025602-35025407 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 111, 21

Conread position: 471-650
Cow position: chrX:34222548-34222373 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 149
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 19, 0

Conread position: 475-670
Cow position: chrX:42530116-42530303 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 15, 0

Conread position: 487-670
Cow position: chrX:35847996-35847819 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 13, 0

Conread position: 491-668
Cow position: chrX:23038216-23038391 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 127, 0

Conread position: 491-670
Cow position: chrX:30093586-30093760 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 33, 0

Conread position: 492-670
Cow position: chrX:8869604-8869781 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 142
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 66, 125

Conread position: 492-679
Cow position: chrX:22603659-22603847 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 178, 130

Conread position: 502-663
Cow position: chrX:38935025-38934866 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 114, 0

Conread position: 502-670
Cow position: chrX:31745727-31745893 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 130
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 116, 0

Conread position: 502-670
Cow position: chrX:33519349-33519183 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 114, 0

Conread position: 502-670
Cow position: chrX:38549181-38549013 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 59, 17

Conread position: 502-670
Cow position: chrX:47243533-47243699 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 60, 0

Conread position: 502-679
Cow position: chrX:323685-323507 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 168, 116

Conread position: 502-679
Cow position: chrX:7513262-7513083 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 141
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 14, 115

Conread position: 504-670
Cow position: chrX:9635477-9635649 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 129

Conread position: 504-670
Cow position: chrX:33493501-33493336 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 24, 113

Conread position: 504-679
Cow position: chrX:12980579-12980755 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 168, 112

Conread position: 509-670
Cow position: chrX:23970121-23969962 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 127
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 109, 0

Conread position: 512-670
Cow position: chrX:39558607-39558763 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 104, 0

Conread position: 514-679
Cow position: chrX:24366193-24366358 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 156, 10

Conread position: 515-663
Cow position: chrX:38941134-38940988 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 101, 0

Conread position: 515-695
Cow position: chrX:36975601-36975427 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 101, 0

Conread position: 520-668
Cow position: chrX:23988289-23988143 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 521-679
Cow position: chrX:13405545-13405705 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 91

Conread position: 522-677
Cow position: chrX:25816505-25816661 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 130
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 148, 99

Conread position: 532-679
Cow position: chrX:20726500-20726352 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 138, 86

Show alignments to all cow chromosomes.