Cow genome map
| Conread name: | Mixn-0035n12 |
| Conread position: | 1-408 |
| Cow position: | chr1:54162996-54162570 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 289 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 1-429 |
| Cow position: | chr1:22516361-22516803 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 64 |
| Conread position: | 1-433 |
| Cow position: | chr1:81371860-81371429 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 303 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 162, 65 |
| Conread position: | 4-390 |
| Cow position: | chr1:52774704-52774313 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 250 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 134, 37 |
| Conread position: | 4-615 |
| Cow position: | chr1:18224062-18223446 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 174 |
| Conread position: | 7-541 |
| Cow position: | chr1:27545635-27546166 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 352 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 29, 107 |
| Conread position: | 7-624 |
| Cow position: | chr1:34892386-34892998 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 424 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 43, 104 |
| Conread position: | 10-435 |
| Cow position: | chr1:19440198-19439759 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 76 |
| Conread position: | 45-626 |
| Cow position: | chr1:30041592-30042169 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 123 |
| Conread position: | 68-406 |
| Cow position: | chr1:33085104-33084768 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 31, 5 |
| Conread position: | 78-388 |
| Cow position: | chr1:1825675-1825993 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 19, 81 |
| Conread position: | 80-393 |
| Cow position: | chr1:52819205-52819514 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 179, 36 |
| Conread position: | 80-396 |
| Cow position: | chr1:82406655-82406327 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 19, 84 |
| Conread position: | 80-542 |
| Cow position: | chr1:92551238-92550790 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 79 |
| Conread position: | 90-546 |
| Cow position: | chr1:22495455-22495918 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 21 |
| Conread position: | 94-390 |
| Cow position: | chr1:82865148-82865447 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 94-397 |
| Cow position: | chr1:86325694-86325382 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 58, 44 |
| Conread position: | 94-454 |
| Cow position: | chr1:52206593-52206963 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 17 |
| Conread position: | 94-461 |
| Cow position: | chr1:64480062-64479677 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 94-622 |
| Cow position: | chr1:87915042-87914526 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 62 |
| Conread position: | 95-397 |
| Cow position: | chr1:42174676-42174364 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 102-387 |
| Cow position: | chr1:71331615-71331332 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 163, 117 |
| Conread position: | 116-621 |
| Cow position: | chr1:85409935-85409437 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 42 |
| Conread position: | 122-626 |
| Cow position: | chr1:74713394-74713892 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 116 |
| Conread position: | 143-447 |
| Cow position: | chr1:23624121-23624437 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 28, 290 |
| Conread position: | 149-449 |
| Cow position: | chr1:40223070-40222762 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 223 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 17, 183 |
| Conread position: | 156-389 |
| Cow position: | chr1:86020112-86019877 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 158-391 |
| Cow position: | chr1:40161190-40161434 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 60, 203 |
| Conread position: | 158-435 |
| Cow position: | chr1:40164216-40164507 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 60, 203 |
| Conread position: | 160-624 |
| Cow position: | chr1:39244599-39244118 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 7 |
| Conread position: | 171-528 |
| Cow position: | chr1:63133606-63133974 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 270 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 47, 134 |
| Conread position: | 178-623 |
| Cow position: | chr1:64099281-64098851 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 168 |
| Conread position: | 193-581 |
| Cow position: | chr1:76780444-76780034 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 65, 289 |
| Conread position: | 200-363 |
| Cow position: | chr1:61241766-61241935 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 200-532 |
| Cow position: | chr1:11879149-11878823 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 116 |
| Conread position: | 201-622 |
| Cow position: | chr1:49727897-49728311 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 26 |
| Conread position: | 205-624 |
| Cow position: | chr1:71555764-71555370 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 56 |
| Conread position: | 212-411 |
| Cow position: | chr1:72181835-72182039 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 71 |
| Conread position: | 214-454 |
| Cow position: | chr1:102556624-102556873 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 45, 7 |
| Conread position: | 229-623 |
| Cow position: | chr1:82573197-82572812 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 57 |
| Conread position: | 231-435 |
| Cow position: | chr1:22070307-22070522 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 244-547 |
| Cow position: | chr1:11831341-11831635 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 21, 81 |
| Conread position: | 258-461 |
| Cow position: | chr1:69061320-69061524 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 136, 104 |
| Conread position: | 258-623 |
| Cow position: | chr1:40420373-40420027 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 33, 59 |
| Conread position: | 268-536 |
| Cow position: | chr1:77755868-77755612 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 35, 172 |
| Conread position: | 273-627 |
| Cow position: | chr1:37432454-37432816 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 313-621 |
| Cow position: | chr1:31233214-31232912 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 83, 133 |
| Conread position: | 341-624 |
| Cow position: | chr1:34310993-34311269 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 197, 23 |
| Conread position: | 372-555 |
| Cow position: | chr1:14560343-14560174 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 388-622 |
| Cow position: | chr1:79915422-79915650 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 154, 49 |
| Conread position: | 389-622 |
| Cow position: | chr1:41092971-41092741 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 144, 71 |
| Conread position: | 389-624 |
| Cow position: | chr1:23887170-23887392 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 36, 61 |
| Conread position: | 391-621 |
| Cow position: | chr1:56858432-56858654 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 159, 47 |
| Conread position: | 394-614 |
| Cow position: | chr1:6985628-6985413 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 155, 42 |
| Conread position: | 472-624 |
| Cow position: | chr1:88017549-88017402 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
Show alignments to all cow chromosomes.