Cow genome map
| Conread name: | Mixn-0035n12 |
| Conread position: | 1-396 |
| Cow position: | chr3:42489526-42489108 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-396 |
| Cow position: | chr3:42594873-42594459 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 33, 84 |
| Conread position: | 1-577 |
| Cow position: | chr3:56711851-56711273 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 1-625 |
| Cow position: | chr3:23478020-23478637 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 92 |
| Conread position: | 5-397 |
| Cow position: | chr3:51598171-51598562 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 33, 72 |
| Conread position: | 7-353 |
| Cow position: | chr3:67044307-67043949 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 99 |
| Conread position: | 45-238 |
| Cow position: | chr3:42490633-42490437 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 45-605 |
| Cow position: | chr3:55460660-55460108 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 70 |
| Conread position: | 73-624 |
| Cow position: | chr3:8753328-8753870 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 48 |
| Conread position: | 80-397 |
| Cow position: | chr3:35511652-35511978 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 61, 127 |
| Conread position: | 80-417 |
| Cow position: | chr3:74849180-74848836 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 70, 10 |
| Conread position: | 80-615 |
| Cow position: | chr3:3690858-3690300 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 88 |
| Conread position: | 80-624 |
| Cow position: | chr3:24531693-24532225 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 81-348 |
| Cow position: | chr3:73417386-73417660 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 18, 83 |
| Conread position: | 92-397 |
| Cow position: | chr3:77448943-77449252 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 46, 78 |
| Conread position: | 93-390 |
| Cow position: | chr3:18351972-18351675 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 67, 47 |
| Conread position: | 93-622 |
| Cow position: | chr3:32773096-32773598 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 46 |
| Conread position: | 94-390 |
| Cow position: | chr3:11326469-11326187 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 94-438 |
| Cow position: | chr3:19689768-19689411 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 279 |
| Conread position: | 94-455 |
| Cow position: | chr3:80929059-80928682 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 266 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 94-623 |
| Cow position: | chr3:27634130-27633604 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 94-623 |
| Cow position: | chr3:77467820-77468359 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 112 |
| Conread position: | 94-626 |
| Cow position: | chr3:60854954-60854435 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 20 |
| Conread position: | 97-411 |
| Cow position: | chr3:27347444-27347124 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 110 |
| Conread position: | 98-622 |
| Cow position: | chr3:84153204-84153712 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 357 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 112-397 |
| Cow position: | chr3:80084282-80083984 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 29, 87 |
| Conread position: | 145-435 |
| Cow position: | chr3:16115516-16115809 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 21 |
| Conread position: | 159-390 |
| Cow position: | chr3:32839998-32839765 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 100, 15 |
| Conread position: | 159-625 |
| Cow position: | chr3:45735087-45735584 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 336 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 100, 38 |
| Conread position: | 194-627 |
| Cow position: | chr3:36538956-36538523 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 147 |
| Conread position: | 199-397 |
| Cow position: | chr3:1224669-1224872 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 40 |
| Conread position: | 199-597 |
| Cow position: | chr3:56042735-56042340 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 286 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 62, 106 |
| Conread position: | 257-627 |
| Cow position: | chr3:1549330-1549721 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 45, 108 |
| Conread position: | 261-428 |
| Cow position: | chr3:24356804-24356971 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 44, 84 |
| Conread position: | 299-620 |
| Cow position: | chr3:78545788-78545468 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 100, 124 |
| Conread position: | 302-621 |
| Cow position: | chr3:21332708-21332410 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 302-623 |
| Cow position: | chr3:26581973-26581671 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 102 |
| Conread position: | 315-468 |
| Cow position: | chr3:69148697-69148544 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 40 |
| Conread position: | 319-625 |
| Cow position: | chr3:8275553-8275854 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 44, 79 |
| Conread position: | 357-621 |
| Cow position: | chr3:43967273-43967008 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 41, 87 |
| Conread position: | 372-620 |
| Cow position: | chr3:23274813-23274566 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 28, 114 |
| Conread position: | 374-626 |
| Cow position: | chr3:17519635-17519384 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 77, 59 |
| Conread position: | 381-621 |
| Cow position: | chr3:79315353-79315585 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 168, 51 |
| Conread position: | 400-621 |
| Cow position: | chr3:60948001-60947792 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 150, 43 |
| Conread position: | 402-623 |
| Cow position: | chr3:12311271-12311480 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 149, 45 |
| Conread position: | 403-620 |
| Cow position: | chr3:74846533-74846323 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 6, 34 |
| Conread position: | 462-624 |
| Cow position: | chr3:56164008-56164172 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 88, 21 |
| Conread position: | 490-623 |
| Cow position: | chr3:13526904-13527034 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 102, 29 |
| Conread position: | 492-614 |
| Cow position: | chr3:64081737-64081862 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 498-624 |
| Cow position: | chr3:73418331-73418456 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 53 |
Show alignments to all cow chromosomes.