Cow genome map
| Conread name: | Mixn-0035n12 |
| Conread position: | 1-390 |
| Cow position: | chr4:51408163-51407775 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 138, 31 |
| Conread position: | 1-532 |
| Cow position: | chr4:31587007-31586490 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 65 |
| Conread position: | 1-615 |
| Cow position: | chr4:49741348-49741977 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 402 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 63, 78 |
| Conread position: | 1-624 |
| Cow position: | chr4:5189207-5188587 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 146 |
| Conread position: | 4-389 |
| Cow position: | chr4:61171706-61172102 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 171 |
| Conread position: | 4-392 |
| Cow position: | chr4:45114803-45114406 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 281 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 27, 171 |
| Conread position: | 4-444 |
| Cow position: | chr4:52597679-52597210 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 287 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 10-523 |
| Cow position: | chr4:8597885-8597363 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 31 |
| Conread position: | 10-548 |
| Cow position: | chr4:58833410-58832867 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 26 |
| Conread position: | 78-622 |
| Cow position: | chr4:21162552-21163069 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 64 |
| Conread position: | 80-389 |
| Cow position: | chr4:53763236-53762921 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 80-619 |
| Cow position: | chr4:9822036-9822571 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 80-623 |
| Cow position: | chr4:34043736-34043195 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 66 |
| Conread position: | 92-428 |
| Cow position: | chr4:41895551-41895894 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 173, 76 |
| Conread position: | 93-347 |
| Cow position: | chr4:5623301-5623043 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 166, 47 |
| Conread position: | 94-622 |
| Cow position: | chr4:59565440-59565972 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 64 |
| Conread position: | 96-300 |
| Cow position: | chr4:32749104-32749303 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 168, 51 |
| Conread position: | 99-623 |
| Cow position: | chr4:41975814-41975294 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 59 |
| Conread position: | 142-626 |
| Cow position: | chr4:47510968-47511455 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 295 |
| Conread position: | 155-625 |
| Cow position: | chr4:39646634-39647103 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 6 |
| Conread position: | 156-418 |
| Cow position: | chr4:57652200-57652471 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 160-558 |
| Cow position: | chr4:29222559-29222160 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 259 |
| Conread position: | 166-576 |
| Cow position: | chr4:4300506-4300916 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 44 |
| Conread position: | 169-548 |
| Cow position: | chr4:17176122-17176492 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 85, 230 |
| Conread position: | 170-623 |
| Cow position: | chr4:14564942-14564486 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 85 |
| Conread position: | 188-422 |
| Cow position: | chr4:20925990-20925752 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 73, 100 |
| Conread position: | 190-621 |
| Cow position: | chr4:29067649-29067224 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 9 |
| Conread position: | 231-620 |
| Cow position: | chr4:53641356-53641735 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 216 |
| Conread position: | 260-417 |
| Cow position: | chr4:68107433-68107275 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 7, 63 |
| Conread position: | 263-561 |
| Cow position: | chr4:27443904-27444205 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 182 |
| Conread position: | 273-576 |
| Cow position: | chr4:9127782-9128079 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 13, 136 |
| Conread position: | 276-517 |
| Cow position: | chr4:60159627-60159387 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 26, 40 |
| Conread position: | 280-622 |
| Cow position: | chr4:57222137-57221800 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 22, 174 |
| Conread position: | 286-618 |
| Cow position: | chr4:46875429-46875078 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 134 |
| Conread position: | 295-453 |
| Cow position: | chr4:32749319-32749490 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 302-461 |
| Cow position: | chr4:51905278-51905440 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 93, 135 |
| Conread position: | 302-622 |
| Cow position: | chr4:6793474-6793785 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 117, 34 |
| Conread position: | 331-627 |
| Cow position: | chr4:58432825-58432541 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 338-623 |
| Cow position: | chr4:2238093-2237816 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 168, 61 |
| Conread position: | 341-489 |
| Cow position: | chr4:49884624-49884482 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 389-625 |
| Cow position: | chr4:45113070-45112854 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 391-621 |
| Cow position: | chr4:58856310-58856087 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 160, 42 |
| Conread position: | 447-623 |
| Cow position: | chr4:22507133-22506956 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 103, 5 |
| Conread position: | 450-622 |
| Cow position: | chr4:24713407-24713234 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 96, 22 |
| Conread position: | 484-625 |
| Cow position: | chr4:13926379-13926236 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 62, 5 |
| Conread position: | 494-622 |
| Cow position: | chr4:31003066-31002936 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 98 |
| Conread position: | 507-622 |
| Cow position: | chr4:51905574-51905693 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
Show alignments to all cow chromosomes.