Cow genome map
| Conread name: | Mixn-0035n12 |
| Conread position: | 1-383 |
| Cow position: | chr5:48224743-48224352 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 271 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 1-397 |
| Cow position: | chr5:37425575-37425986 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 1-624 |
| Cow position: | chr5:51076811-51076172 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 54 |
| Conread position: | 14-624 |
| Cow position: | chr5:37047898-37048508 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 152 |
| Conread position: | 41-321 |
| Cow position: | chr5:51952259-51952547 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 130, 27 |
| Conread position: | 45-409 |
| Cow position: | chr5:34483650-34483282 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 46 |
| Conread position: | 46-397 |
| Cow position: | chr5:61030339-61029979 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 121, 283 |
| Conread position: | 56-397 |
| Cow position: | chr5:19300533-19300200 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 71-622 |
| Cow position: | chr5:26562066-26562592 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 360 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 94, 83 |
| Conread position: | 72-578 |
| Cow position: | chr5:15882556-15882045 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 80-393 |
| Cow position: | chr5:23753302-23752981 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 88 |
| Conread position: | 80-615 |
| Cow position: | chr5:1305315-1304776 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 79 |
| Conread position: | 94-262 |
| Cow position: | chr5:34167893-34168063 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 94-414 |
| Cow position: | chr5:25927759-25927438 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 94-619 |
| Cow position: | chr5:23234398-23234917 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 348 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 13, 69 |
| Conread position: | 94-622 |
| Cow position: | chr5:60968338-60968886 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 371 |
| Conread position: | 101-389 |
| Cow position: | chr5:63159985-63160284 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 111-624 |
| Cow position: | chr5:45912343-45911842 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 31 |
| Conread position: | 113-388 |
| Cow position: | chr5:364643-364359 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 149-621 |
| Cow position: | chr5:21146243-21145778 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 96 |
| Conread position: | 158-408 |
| Cow position: | chr5:70128139-70128390 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 101, 26 |
| Conread position: | 162-498 |
| Cow position: | chr5:10786238-10785889 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 12, 294 |
| Conread position: | 170-624 |
| Cow position: | chr5:29431630-29431206 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 13, 58 |
| Conread position: | 190-405 |
| Cow position: | chr5:39118218-39118432 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 33 |
| Conread position: | 190-534 |
| Cow position: | chr5:54156728-54157067 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 71, 26 |
| Conread position: | 217-532 |
| Cow position: | chr5:27492750-27493072 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 42, 157 |
| Conread position: | 235-622 |
| Cow position: | chr5:57127517-57127903 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 198 |
| Conread position: | 251-461 |
| Cow position: | chr5:9233287-9233071 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 7 |
| Conread position: | 266-520 |
| Cow position: | chr5:21166950-21166699 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 39, 189 |
| Conread position: | 269-450 |
| Cow position: | chr5:31550728-31550914 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 126, 64 |
| Conread position: | 286-622 |
| Cow position: | chr5:56741789-56742108 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 16, 103 |
| Conread position: | 302-433 |
| Cow position: | chr5:60725183-60725320 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 302-447 |
| Cow position: | chr5:34168311-34168459 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 308-424 |
| Cow position: | chr5:76122766-76122654 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 318-621 |
| Cow position: | chr5:25925720-25925420 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 15, 113 |
| Conread position: | 321-417 |
| Cow position: | chr5:9025121-9025217 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 326-622 |
| Cow position: | chr5:13575600-13575300 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 66, 89 |
| Conread position: | 333-606 |
| Cow position: | chr5:62579977-62580241 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 40, 106 |
| Conread position: | 382-624 |
| Cow position: | chr5:51953093-51953329 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 382-625 |
| Cow position: | chr5:53599832-53599599 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 12, 56 |
| Conread position: | 389-624 |
| Cow position: | chr5:38274000-38274230 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 157, 21 |
| Conread position: | 389-624 |
| Cow position: | chr5:57965065-57964845 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 168, 48 |
| Conread position: | 391-548 |
| Cow position: | chr5:46334943-46335090 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 391-581 |
| Cow position: | chr5:38911300-38911483 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 156, 46 |
| Conread position: | 482-626 |
| Cow position: | chr5:12329383-12329236 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 8 |
Show alignments to all cow chromosomes.