Cow genome map
| Conread name: | Mixn-0035n12 |
| Conread position: | 1-265 |
| Cow position: | chr6:34549258-34549519 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 138, 29 |
| Conread position: | 1-297 |
| Cow position: | chr6:55936129-55935822 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 41 |
| Conread position: | 1-383 |
| Cow position: | chr6:32428092-32428476 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 137, 32 |
| Conread position: | 1-397 |
| Cow position: | chr6:11383123-11382714 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 1-403 |
| Cow position: | chr6:58594259-58593849 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 40 |
| Conread position: | 1-435 |
| Cow position: | chr6:12519362-12519790 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 1-545 |
| Cow position: | chr6:4666938-4666397 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 41 |
| Conread position: | 1-624 |
| Cow position: | chr6:62754634-62754018 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 66 |
| Conread position: | 5-624 |
| Cow position: | chr6:29077580-29078200 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 289 |
| Conread position: | 26-389 |
| Cow position: | chr6:7997901-7998264 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 49, 53 |
| Conread position: | 80-386 |
| Cow position: | chr6:20332554-20332240 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 23, 151 |
| Conread position: | 80-397 |
| Cow position: | chr6:51071634-51071965 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 24, 325 |
| Conread position: | 80-615 |
| Cow position: | chr6:39917099-39917634 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 84 |
| Conread position: | 80-621 |
| Cow position: | chr6:3017380-3017934 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 79 |
| Conread position: | 80-625 |
| Cow position: | chr6:44377197-44377740 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 84 |
| Conread position: | 92-255 |
| Cow position: | chr6:29084262-29084099 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 93-256 |
| Cow position: | chr6:20172169-20172334 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 72 |
| Conread position: | 93-360 |
| Cow position: | chr6:38899824-38899552 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 45, 20 |
| Conread position: | 94-601 |
| Cow position: | chr6:45617489-45616981 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 333 |
| Conread position: | 94-621 |
| Cow position: | chr6:41557425-41557952 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 39 |
| Conread position: | 94-626 |
| Cow position: | chr6:23891501-23892025 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 354 |
| Conread position: | 98-620 |
| Cow position: | chr6:11160054-11159527 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 364 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 111-624 |
| Cow position: | chr6:31688221-31687717 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 45 |
| Conread position: | 112-398 |
| Cow position: | chr6:27710617-27710901 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 41, 56 |
| Conread position: | 145-411 |
| Cow position: | chr6:29803799-29804071 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 114, 16 |
| Conread position: | 165-623 |
| Cow position: | chr6:45692642-45692193 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 260 |
| Conread position: | 170-598 |
| Cow position: | chr6:6244883-6244472 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 170-625 |
| Cow position: | chr6:69274767-69274304 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 283 |
| Conread position: | 205-529 |
| Cow position: | chr6:39292961-39293267 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 21, 63 |
| Conread position: | 211-390 |
| Cow position: | chr6:16337681-16337494 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 213-622 |
| Cow position: | chr6:6635208-6635610 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 39 |
| Conread position: | 250-620 |
| Cow position: | chr6:41157337-41157693 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 52, 122 |
| Conread position: | 258-376 |
| Cow position: | chr6:20172376-20172494 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 260-424 |
| Cow position: | chr6:23932845-23932679 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 303-599 |
| Cow position: | chr6:5678881-5678569 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 103, 87 |
| Conread position: | 304-449 |
| Cow position: | chr6:29082896-29082750 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 316-623 |
| Cow position: | chr6:3374271-3373954 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 83, 148 |
| Conread position: | 377-623 |
| Cow position: | chr6:32428677-32428912 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 15, 73 |
| Conread position: | 390-618 |
| Cow position: | chr6:55743307-55743527 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 200, 59 |
| Conread position: | 394-585 |
| Cow position: | chr6:55659745-55659551 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 42, 69 |
| Conread position: | 394-621 |
| Cow position: | chr6:29299808-29300024 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 196, 44 |
| Conread position: | 484-622 |
| Cow position: | chr6:20332640-20332781 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.