Cow genome map
| Conread name: | Mixn-0035n12 |
| Conread position: | 1-383 |
| Cow position: | chr9:44408262-44407865 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 261 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 39, 63 |
| Conread position: | 1-409 |
| Cow position: | chr9:12183974-12183548 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 90 |
| Conread position: | 1-414 |
| Cow position: | chr9:55651242-55650831 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 287 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 1-622 |
| Cow position: | chr9:34762628-34763259 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 96 |
| Conread position: | 10-360 |
| Cow position: | chr9:27310552-27310884 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 169, 43 |
| Conread position: | 79-620 |
| Cow position: | chr9:41317836-41318385 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 80-237 |
| Cow position: | chr9:8779100-8779261 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 80-398 |
| Cow position: | chr9:19079854-19080166 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 71, 125 |
| Conread position: | 80-531 |
| Cow position: | chr9:55365025-55364576 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 316 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 161, 42 |
| Conread position: | 83-396 |
| Cow position: | chr9:31091957-31091641 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 16, 86 |
| Conread position: | 93-390 |
| Cow position: | chr9:5485990-5485690 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 94-390 |
| Cow position: | chr9:13845858-13845567 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 33, 21 |
| Conread position: | 94-418 |
| Cow position: | chr9:24850364-24850046 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 165, 56 |
| Conread position: | 94-435 |
| Cow position: | chr9:25502422-25502759 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 167, 46 |
| Conread position: | 94-446 |
| Cow position: | chr9:10761228-10761579 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 36 |
| Conread position: | 94-627 |
| Cow position: | chr9:1280975-1281519 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 96-300 |
| Cow position: | chr9:8406109-8406309 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 162, 45 |
| Conread position: | 98-329 |
| Cow position: | chr9:46657347-46657591 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 98-605 |
| Cow position: | chr9:5621917-5622408 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 58 |
| Conread position: | 112-623 |
| Cow position: | chr9:51269977-51269473 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 298 |
| Conread position: | 114-389 |
| Cow position: | chr9:2223670-2223954 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 24, 44 |
| Conread position: | 151-560 |
| Cow position: | chr9:44944041-44944445 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 102, 38 |
| Conread position: | 156-390 |
| Cow position: | chr9:22976798-22977036 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 103, 17 |
| Conread position: | 157-396 |
| Cow position: | chr9:14732398-14732147 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 9, 133 |
| Conread position: | 160-454 |
| Cow position: | chr9:12182026-12181719 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 104, 94 |
| Conread position: | 177-435 |
| Cow position: | chr9:59114417-59114143 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 76, 27 |
| Conread position: | 190-624 |
| Cow position: | chr9:4835016-4834577 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 156 |
| Conread position: | 191-622 |
| Cow position: | chr9:6109914-6109505 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 307 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 70, 30 |
| Conread position: | 199-621 |
| Cow position: | chr9:18570367-18570792 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 244 |
| Conread position: | 201-621 |
| Cow position: | chr9:12198880-12199313 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 236-622 |
| Cow position: | chr9:4985400-4985770 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 123 |
| Conread position: | 262-623 |
| Cow position: | chr9:9077155-9077513 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 268 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 8, 84 |
| Conread position: | 276-574 |
| Cow position: | chr9:39993676-39993971 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 26, 156 |
| Conread position: | 291-622 |
| Cow position: | chr9:52725427-52725761 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 11, 154 |
| Conread position: | 302-615 |
| Cow position: | chr9:7670527-7670221 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 90, 128 |
| Conread position: | 302-624 |
| Cow position: | chr9:34188873-34188576 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 244, 50 |
| Conread position: | 313-623 |
| Cow position: | chr9:2638419-2638728 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 85, 143 |
| Conread position: | 322-624 |
| Cow position: | chr9:53596914-53597213 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 70, 22 |
| Conread position: | 341-620 |
| Cow position: | chr9:35527585-35527309 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 388-620 |
| Cow position: | chr9:12183550-12183321 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 49, 69 |
| Conread position: | 389-622 |
| Cow position: | chr9:9539411-9539191 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 10, 50 |
| Conread position: | 391-624 |
| Cow position: | chr9:39001580-39001359 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 159, 44 |
| Conread position: | 394-622 |
| Cow position: | chr9:1526983-1527205 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 51, 44 |
| Conread position: | 456-622 |
| Cow position: | chr9:40858921-40859090 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 94, 33 |
Show alignments to all cow chromosomes.