Cow genome map
| Conread name: | Mixn-0035n12 |
| Conread position: | 1-620 |
| Cow position: | chrX:11674899-11675530 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 456 |
| Conread position: | 80-378 |
| Cow position: | chrX:12826667-12826977 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 61, 170 |
| Conread position: | 80-598 |
| Cow position: | chrX:8558543-8558021 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 87 |
| Conread position: | 80-622 |
| Cow position: | chrX:2186170-2186713 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 80 |
| Conread position: | 80-623 |
| Cow position: | chrX:23254291-23253752 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 83 |
| Conread position: | 90-621 |
| Cow position: | chrX:12689158-12688622 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 94-334 |
| Cow position: | chrX:13058505-13058753 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 44, 64 |
| Conread position: | 94-347 |
| Cow position: | chrX:13245529-13245789 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 44, 100 |
| Conread position: | 94-397 |
| Cow position: | chrX:11982071-11982369 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 47, 64 |
| Conread position: | 94-408 |
| Cow position: | chrX:2147279-2147594 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 118 |
| Conread position: | 94-433 |
| Cow position: | chrX:4631737-4631385 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 94-620 |
| Cow position: | chrX:24201121-24201633 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 47 |
| Conread position: | 94-622 |
| Cow position: | chrX:21816197-21816727 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 73 |
| Conread position: | 95-623 |
| Cow position: | chrX:43647812-43647296 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 360 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 52, 128 |
| Conread position: | 96-420 |
| Cow position: | chrX:30729476-30729141 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 111-622 |
| Cow position: | chrX:16816620-16817110 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 30 |
| Conread position: | 142-588 |
| Cow position: | chrX:10311729-10312165 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 167 |
| Conread position: | 155-338 |
| Cow position: | chrX:24952561-24952374 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 118, 93 |
| Conread position: | 157-434 |
| Cow position: | chrX:24285954-24286245 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 108, 200 |
| Conread position: | 161-622 |
| Cow position: | chrX:20504718-20505167 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 9 |
| Conread position: | 165-623 |
| Cow position: | chrX:4597720-4597255 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 126 |
| Conread position: | 177-616 |
| Cow position: | chrX:25453201-25453635 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 51 |
| Conread position: | 177-622 |
| Cow position: | chrX:19018238-19017782 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 42 |
| Conread position: | 199-623 |
| Cow position: | chrX:18814211-18814630 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 136 |
| Conread position: | 211-625 |
| Cow position: | chrX:21886064-21885645 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 234-623 |
| Cow position: | chrX:956555-956944 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 25, 151 |
| Conread position: | 244-622 |
| Cow position: | chrX:9910664-9910293 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 59, 218 |
| Conread position: | 258-435 |
| Cow position: | chrX:31816795-31816972 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 44, 22 |
| Conread position: | 277-623 |
| Cow position: | chrX:25106333-25106684 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 168 |
| Conread position: | 286-554 |
| Cow position: | chrX:18517918-18518194 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 16, 162 |
| Conread position: | 299-532 |
| Cow position: | chrX:19217179-19216948 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 62, 157 |
| Conread position: | 299-621 |
| Cow position: | chrX:4590100-4590404 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 68 |
| Conread position: | 312-624 |
| Cow position: | chrX:40353470-40353770 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 48 |
| Conread position: | 314-619 |
| Cow position: | chrX:28938956-28939246 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 78, 117 |
| Conread position: | 339-620 |
| Cow position: | chrX:24952186-24951912 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 61, 106 |
| Conread position: | 355-625 |
| Cow position: | chrX:27458532-27458267 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 195, 72 |
| Conread position: | 363-621 |
| Cow position: | chrX:19127430-19127179 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 77, 53 |
| Conread position: | 380-622 |
| Cow position: | chrX:6471929-6472168 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 62 |
| Conread position: | 381-612 |
| Cow position: | chrX:2700880-2700656 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 385-623 |
| Cow position: | chrX:18700129-18699895 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 30, 34 |
| Conread position: | 389-621 |
| Cow position: | chrX:37138039-37137818 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 63 |
| Conread position: | 389-623 |
| Cow position: | chrX:37364653-37364881 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 154, 41 |
| Conread position: | 391-620 |
| Cow position: | chrX:11982839-11983048 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 391-622 |
| Cow position: | chrX:4625143-4625368 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 159, 58 |
| Conread position: | 392-625 |
| Cow position: | chrX:13060776-13061006 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 80, 13 |
| Conread position: | 394-614 |
| Cow position: | chrX:18467697-18467915 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 83, 32 |
| Conread position: | 450-619 |
| Cow position: | chrX:13403458-13403287 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 100, 43 |
| Conread position: | 457-623 |
| Cow position: | chrX:4631080-4630914 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 92, 26 |
| Conread position: | 461-606 |
| Cow position: | chrX:4601343-4601198 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 89, 21 |
| Conread position: | 463-620 |
| Cow position: | chrX:31816979-31817135 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 124, 20 |
| Conread position: | 481-619 |
| Cow position: | chrX:2147635-2147773 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 9 |
Show alignments to all cow chromosomes.