Cow genome map

Conread name: Mixn-0036c18

Conread position: 1-250
Cow position: chr11:77756491-77756241 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 23, 81

Conread position: 1-256
Cow position: chr11:35251720-35251474 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 195
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 21, 32

Conread position: 1-284
Cow position: chr11:10877518-10877802 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 212
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 23, 149

Conread position: 1-292
Cow position: chr11:58793739-58793449 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 85

Conread position: 1-298
Cow position: chr11:12791040-12791327 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 218
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 23, 141

Conread position: 1-310
Cow position: chr11:25972666-25972370 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 231
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 23, 91

Conread position: 1-311
Cow position: chr11:34397748-34398056 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 67

Conread position: 1-314
Cow position: chr11:77763234-77762942 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 223
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 25, 45

Conread position: 1-323
Cow position: chr11:18153980-18153667 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 235
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 23, 32

Conread position: 1-324
Cow position: chr11:57753115-57752789 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 234
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 157

Conread position: 1-327
Cow position: chr11:82529133-82529469 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 42

Conread position: 1-328
Cow position: chr11:12064975-12065287 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 25, 97

Conread position: 1-331
Cow position: chr11:55119736-55120064 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 160

Conread position: 1-332
Cow position: chr11:15885563-15885893 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 101

Conread position: 1-332
Cow position: chr11:18452877-18452558 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 119

Conread position: 2-235
Cow position: chr11:12141014-12141234 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 24, 29

Conread position: 2-256
Cow position: chr11:57062139-57062383 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 193
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 82, 58

Conread position: 2-314
Cow position: chr11:17737583-17737895 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 213
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 21, 136

Conread position: 2-314
Cow position: chr11:24008366-24008673 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 220
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 22, 14

Conread position: 2-330
Cow position: chr11:22851306-22851635 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 167

Conread position: 3-216
Cow position: chr11:25856461-25856672 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 153

Conread position: 3-303
Cow position: chr11:77772423-77772132 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 221
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 21, 110

Conread position: 3-305
Cow position: chr11:43831539-43831245 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 223
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 20, 220

Conread position: 3-310
Cow position: chr11:5221160-5220861 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 219
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 26, 104

Conread position: 3-310
Cow position: chr11:74171343-74171043 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 230
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 21, 88

Conread position: 3-314
Cow position: chr11:87168497-87168207 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 217
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 21, 77

Conread position: 3-319
Cow position: chr11:27817234-27816937 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 21, 53

Conread position: 3-332
Cow position: chr11:8087882-8087560 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 243
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 61, 18

Conread position: 4-280
Cow position: chr11:40574499-40574226 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 208
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 20, 98

Conread position: 4-305
Cow position: chr11:34761456-34761159 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 219
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 20, 80

Conread position: 4-328
Cow position: chr11:64101322-64101645 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 57

Conread position: 5-329
Cow position: chr11:34303737-34304059 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 150

Conread position: 8-311
Cow position: chr11:39830949-39830662 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 213
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 17, 149

Conread position: 9-331
Cow position: chr11:84872104-84872431 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 214
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 185

Conread position: 10-323
Cow position: chr11:1774619-1774299 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 126

Conread position: 12-277
Cow position: chr11:57153384-57153117 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 12, 32

Conread position: 12-323
Cow position: chr11:15265545-15265236 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 226
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 12, 27

Conread position: 12-325
Cow position: chr11:25807461-25807146 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 102

Conread position: 13-283
Cow position: chr11:11109830-11109554 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 184
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 12, 153

Conread position: 21-274
Cow position: chr11:77713370-77713121 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 184
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 24, 69

Conread position: 21-276
Cow position: chr11:27610729-27610970 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 50

Conread position: 21-286
Cow position: chr11:70605666-70605928 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 183
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 29, 137

Conread position: 25-305
Cow position: chr11:69491707-69491980 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 213
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 19, 129

Conread position: 30-266
Cow position: chr11:63520799-63521040 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 169
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 15, 58

Conread position: 30-332
Cow position: chr11:44064176-44064480 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 76

Conread position: 37-325
Cow position: chr11:43855928-43855643 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 219
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 9, 68

Conread position: 51-314
Cow position: chr11:19567357-19567608 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 15, 54

Conread position: 55-306
Cow position: chr11:53663452-53663695 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 18, 104

Conread position: 62-306
Cow position: chr11:17054111-17053873 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 28, 38

Conread position: 62-319
Cow position: chr11:55283198-55282931 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 193
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 26, 0

Conread position: 62-332
Cow position: chr11:35284433-35284688 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 188
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 246, 36

Conread position: 67-314
Cow position: chr11:29785451-29785688 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 30, 60

Conread position: 84-329
Cow position: chr11:38114089-38113856 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 168
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 123, 73

Conread position: 99-323
Cow position: chr11:54204454-54204241 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 53, 0

Conread position: 99-327
Cow position: chr11:34265798-34266017 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 170
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 214, 49

Conread position: 100-312
Cow position: chr11:18090510-18090717 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 54, 63

Conread position: 100-331
Cow position: chr11:30660657-30660888 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 105-321
Cow position: chr11:21909762-21909547 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 29

Conread position: 109-271
Cow position: chr11:9192756-9192604 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 109-314
Cow position: chr11:53755192-53754986 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 75, 39

Conread position: 116-288
Cow position: chr11:15106418-15106245 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 152, 51

Conread position: 118-330
Cow position: chr11:3261102-3261304 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 195, 41

Conread position: 125-235
Cow position: chr11:9295238-9295130 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 125-330
Cow position: chr11:15374178-15374371 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 157
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 33, 42

Conread position: 129-292
Cow position: chr11:39166579-39166741 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 22, 39

Conread position: 132-314
Cow position: chr11:34024940-34025110 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 30, 0

Conread position: 136-324
Cow position: chr11:16363990-16363805 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 157
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 8, 27

Conread position: 152-313
Cow position: chr11:9424408-9424564 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 14, 0

Conread position: 153-308
Cow position: chr11:462689-462843 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 158-288
Cow position: chr11:77477849-77477722 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 103, 0

Conread position: 158-288
Cow position: chr11:77478523-77478396 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 103, 0

Conread position: 159-314
Cow position: chr11:38009595-38009439 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 168-321
Cow position: chr11:28748113-28747960 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 31, 135

Conread position: 168-330
Cow position: chr11:21544470-21544632 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 127, 140

Conread position: 171-292
Cow position: chr11:31355762-31355883 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 171-304
Cow position: chr11:54485450-54485578 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 172-320
Cow position: chr11:53331219-53331368 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 89, 0

Conread position: 172-321
Cow position: chr11:20998574-20998730 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 69, 0

Conread position: 172-327
Cow position: chr11:13828751-13828601 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 172-330
Cow position: chr11:80780561-80780719 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 127
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 140, 86

Conread position: 174-314
Cow position: chr11:65777329-65777189 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 176-290
Cow position: chr11:33103463-33103349 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 89
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 183-313
Cow position: chr11:51020426-51020560 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 184-306
Cow position: chr11:54497088-54496961 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 191-302
Cow position: chr11:73007322-73007433 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 195-320
Cow position: chr11:50027048-50026925 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 86, 0

Conread position: 200-306
Cow position: chr11:85005895-85006001 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.