Cow genome map
| Conread name: | Mixn-0036c18 |
| Conread position: | 1-187 |
| Cow position: | chr13:39487614-39487809 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 159 |
| Conread position: | 1-211 |
| Cow position: | chr13:24675951-24676165 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 23, 104 |
| Conread position: | 1-249 |
| Cow position: | chr13:21878390-21878139 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 171 |
| Conread position: | 1-250 |
| Cow position: | chr13:46464529-46464283 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 23, 97 |
| Conread position: | 1-267 |
| Cow position: | chr13:17169486-17169747 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 22, 89 |
| Conread position: | 1-271 |
| Cow position: | chr13:47325602-47325338 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 23, 105 |
| Conread position: | 1-285 |
| Cow position: | chr13:51142721-51142445 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 23, 104 |
| Conread position: | 1-290 |
| Cow position: | chr13:28605704-28605997 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 21, 154 |
| Conread position: | 1-306 |
| Cow position: | chr13:34885265-34885576 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 106 |
| Conread position: | 1-308 |
| Cow position: | chr13:6921290-6920999 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 1-310 |
| Cow position: | chr13:12325397-12325684 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 1-310 |
| Cow position: | chr13:44144114-44143809 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 1-313 |
| Cow position: | chr13:19015175-19014865 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 23, 33 |
| Conread position: | 1-320 |
| Cow position: | chr13:27844120-27843829 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 43, 78 |
| Conread position: | 1-324 |
| Cow position: | chr13:34264799-34264496 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 23, 55 |
| Conread position: | 1-325 |
| Cow position: | chr13:14080155-14079835 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 23, 55 |
| Conread position: | 1-327 |
| Cow position: | chr13:17597067-17597381 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 1-327 |
| Cow position: | chr13:19115702-19116020 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 23, 155 |
| Conread position: | 1-330 |
| Cow position: | chr13:45497557-45497878 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 22, 125 |
| Conread position: | 1-330 |
| Cow position: | chr13:55406959-55407284 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 56 |
| Conread position: | 1-331 |
| Cow position: | chr13:24404081-24403754 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 102 |
| Conread position: | 1-332 |
| Cow position: | chr13:12213769-12214102 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 37 |
| Conread position: | 1-332 |
| Cow position: | chr13:26255444-26255104 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 23, 113 |
| Conread position: | 2-179 |
| Cow position: | chr13:26943097-26943279 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 21, 102 |
| Conread position: | 2-239 |
| Cow position: | chr13:20656617-20656867 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 219 |
| Conread position: | 2-270 |
| Cow position: | chr13:7803994-7803718 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 129 |
| Conread position: | 2-290 |
| Cow position: | chr13:50662031-50662328 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 2-301 |
| Cow position: | chr13:25955336-25955031 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 212 |
| Conread position: | 2-306 |
| Cow position: | chr13:33239805-33240112 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 25, 129 |
| Conread position: | 2-311 |
| Cow position: | chr13:15731276-15730972 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 42, 104 |
| Conread position: | 2-331 |
| Cow position: | chr13:43385093-43385411 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 237 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 22, 36 |
| Conread position: | 3-309 |
| Cow position: | chr13:27529061-27529356 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 28 |
| Conread position: | 3-327 |
| Cow position: | chr13:11223130-11222817 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 87 |
| Conread position: | 3-328 |
| Cow position: | chr13:51435189-51434866 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 21, 106 |
| Conread position: | 4-278 |
| Cow position: | chr13:51241016-51241295 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 151 |
| Conread position: | 7-272 |
| Cow position: | chr13:34931557-34931811 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 22, 31 |
| Conread position: | 8-277 |
| Cow position: | chr13:5619386-5619111 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 17, 164 |
| Conread position: | 9-325 |
| Cow position: | chr13:52833538-52833223 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 82 |
| Conread position: | 12-277 |
| Cow position: | chr13:12658015-12658269 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 12-332 |
| Cow position: | chr13:4796125-4796447 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 121 |
| Conread position: | 13-226 |
| Cow position: | chr13:27726256-27726459 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 32, 78 |
| Conread position: | 13-294 |
| Cow position: | chr13:10854710-10854432 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 13-306 |
| Cow position: | chr13:4908421-4908693 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 11, 68 |
| Conread position: | 21-313 |
| Cow position: | chr13:43803233-43803525 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 24, 220 |
| Conread position: | 21-323 |
| Cow position: | chr13:698699-698985 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 24, 66 |
| Conread position: | 34-330 |
| Cow position: | chr13:59997476-59997175 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 11, 190 |
| Conread position: | 35-328 |
| Cow position: | chr13:38361972-38361680 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 9, 133 |
| Conread position: | 36-320 |
| Cow position: | chr13:22984779-22985069 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 37-319 |
| Cow position: | chr13:18597037-18596770 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 9, 108 |
| Conread position: | 39-313 |
| Cow position: | chr13:57611549-57611826 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 6, 68 |
| Conread position: | 42-328 |
| Cow position: | chr13:43928906-43928624 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 69 |
| Conread position: | 48-325 |
| Cow position: | chr13:22193750-22194019 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 51 |
| Conread position: | 62-320 |
| Cow position: | chr13:48580632-48580382 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 62-331 |
| Cow position: | chr13:2416402-2416666 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 37, 46 |
| Conread position: | 79-332 |
| Cow position: | chr13:24198016-24197773 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 232, 82 |
| Conread position: | 98-328 |
| Cow position: | chr13:43903711-43903491 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 6, 51 |
| Conread position: | 99-313 |
| Cow position: | chr13:18839462-18839668 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 99-315 |
| Cow position: | chr13:4659676-4659465 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 105-280 |
| Cow position: | chr13:46373042-46372875 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 38, 17 |
| Conread position: | 108-332 |
| Cow position: | chr13:48080171-48080394 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 109-283 |
| Cow position: | chr13:2807733-2807916 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 109-330 |
| Cow position: | chr13:13987916-13987689 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 105 |
| Conread position: | 110-314 |
| Cow position: | chr13:37805483-37805697 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 39, 108 |
| Conread position: | 112-314 |
| Cow position: | chr13:15489927-15490125 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 113-320 |
| Cow position: | chr13:30951063-30950853 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 63, 36 |
| Conread position: | 113-331 |
| Cow position: | chr13:14708773-14708990 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 35, 40 |
| Conread position: | 125-319 |
| Cow position: | chr13:37498122-37498310 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 126-306 |
| Cow position: | chr13:20876671-20876492 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 134, 36 |
| Conread position: | 128-314 |
| Cow position: | chr13:29956765-29956952 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 14, 118 |
| Conread position: | 128-326 |
| Cow position: | chr13:27795821-27796015 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 183, 24 |
| Conread position: | 134-330 |
| Cow position: | chr13:57746273-57746469 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 140-326 |
| Cow position: | chr13:62169927-62170111 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 168, 31 |
| Conread position: | 143-327 |
| Cow position: | chr13:18541389-18541570 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 157-310 |
| Cow position: | chr13:51177600-51177752 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 163-314 |
| Cow position: | chr13:26034454-26034298 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 126, 63 |
| Conread position: | 168-316 |
| Cow position: | chr13:3564149-3564000 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 71, 121 |
| Conread position: | 175-329 |
| Cow position: | chr13:24676315-24676461 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 183-304 |
| Cow position: | chr13:33503014-33503134 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 190-320 |
| Cow position: | chr13:25877585-25877716 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 194-332 |
| Cow position: | chr13:20496476-20496337 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 196-314 |
| Cow position: | chr13:17406007-17406123 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
Show alignments to all cow chromosomes.