Cow genome map
| Conread name: | Mixn-0036c18 |
| Conread position: | 1-197 |
| Cow position: | chr2:77968226-77968028 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 1-198 |
| Cow position: | chr2:42286213-42286017 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 63, 165 |
| Conread position: | 1-310 |
| Cow position: | chr2:13048502-13048799 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 23, 104 |
| Conread position: | 1-312 |
| Cow position: | chr2:11736690-11736994 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 39, 158 |
| Conread position: | 1-313 |
| Cow position: | chr2:68962809-68962515 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 21, 71 |
| Conread position: | 1-314 |
| Cow position: | chr2:47746516-47746815 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 1-314 |
| Cow position: | chr2:82828083-82827783 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 1-319 |
| Cow position: | chr2:21697435-21697125 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 23, 123 |
| Conread position: | 1-320 |
| Cow position: | chr2:14037426-14037120 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 1-320 |
| Cow position: | chr2:23811415-23811701 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 23, 76 |
| Conread position: | 1-322 |
| Cow position: | chr2:72599102-72599421 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 80 |
| Conread position: | 1-324 |
| Cow position: | chr2:33791196-33790876 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 45 |
| Conread position: | 1-324 |
| Cow position: | chr2:56823052-56822726 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 101 |
| Conread position: | 1-327 |
| Cow position: | chr2:4478077-4478411 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 23, 290 |
| Conread position: | 1-328 |
| Cow position: | chr2:23062633-23062315 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 83 |
| Conread position: | 1-331 |
| Cow position: | chr2:7212080-7212407 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 2-315 |
| Cow position: | chr2:5767752-5767455 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 2-316 |
| Cow position: | chr2:43345007-43344688 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 2-324 |
| Cow position: | chr2:9043484-9043801 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 128 |
| Conread position: | 3-269 |
| Cow position: | chr2:53716691-53716436 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 96, 34 |
| Conread position: | 3-277 |
| Cow position: | chr2:80604046-80603768 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 21, 152 |
| Conread position: | 3-303 |
| Cow position: | chr2:52347487-52347190 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 154 |
| Conread position: | 3-314 |
| Cow position: | chr2:74848131-74848464 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 3-326 |
| Cow position: | chr2:63287859-63287550 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 4-296 |
| Cow position: | chr2:39411929-39412225 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 20, 163 |
| Conread position: | 4-312 |
| Cow position: | chr2:4927787-4927482 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 20, 169 |
| Conread position: | 6-332 |
| Cow position: | chr2:7365932-7365610 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 27 |
| Conread position: | 7-276 |
| Cow position: | chr2:41490924-41491201 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 17, 52 |
| Conread position: | 8-321 |
| Cow position: | chr2:74387834-74387525 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 86 |
| Conread position: | 11-229 |
| Cow position: | chr2:20281788-20282006 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 34, 105 |
| Conread position: | 12-306 |
| Cow position: | chr2:40370471-40370191 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 33, 103 |
| Conread position: | 12-318 |
| Cow position: | chr2:3544304-3543999 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 33, 98 |
| Conread position: | 12-332 |
| Cow position: | chr2:7779184-7778873 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 21-310 |
| Cow position: | chr2:62463691-62463400 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 22 |
| Conread position: | 21-314 |
| Cow position: | chr2:52183257-52183543 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 15 |
| Conread position: | 21-330 |
| Cow position: | chr2:13684902-13685205 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 24, 94 |
| Conread position: | 23-326 |
| Cow position: | chr2:3182214-3181908 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 26-272 |
| Cow position: | chr2:44983361-44983112 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 28-311 |
| Cow position: | chr2:69982679-69982948 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 28-331 |
| Cow position: | chr2:18274356-18274055 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 33-331 |
| Cow position: | chr2:41417917-41417625 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 12, 74 |
| Conread position: | 34-320 |
| Cow position: | chr2:46130616-46130330 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 40, 78 |
| Conread position: | 42-313 |
| Cow position: | chr2:12777245-12776982 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 24, 88 |
| Conread position: | 43-314 |
| Cow position: | chr2:31420320-31420597 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 24, 70 |
| Conread position: | 46-310 |
| Cow position: | chr2:49441163-49441421 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 39, 60 |
| Conread position: | 50-332 |
| Cow position: | chr2:38806016-38805733 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 44, 92 |
| Conread position: | 51-313 |
| Cow position: | chr2:19750666-19750925 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 46, 77 |
| Conread position: | 62-257 |
| Cow position: | chr2:38583575-38583379 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 35, 71 |
| Conread position: | 64-321 |
| Cow position: | chr2:15273530-15273288 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 54 |
| Conread position: | 65-292 |
| Cow position: | chr2:19130507-19130722 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 66-305 |
| Cow position: | chr2:19480700-19480928 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 31, 57 |
| Conread position: | 99-306 |
| Cow position: | chr2:51826776-51826586 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 99-313 |
| Cow position: | chr2:27782793-27782579 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 99-332 |
| Cow position: | chr2:9709850-9710076 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 105-304 |
| Cow position: | chr2:45680993-45681198 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 107-319 |
| Cow position: | chr2:25112531-25112733 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 109-314 |
| Cow position: | chr2:53280772-53280977 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 116, 48 |
| Conread position: | 112-306 |
| Cow position: | chr2:43000887-43000705 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 113-327 |
| Cow position: | chr2:20534229-20534020 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 84, 39 |
| Conread position: | 116-321 |
| Cow position: | chr2:73205032-73204830 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 126-314 |
| Cow position: | chr2:18759892-18760079 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 107, 22 |
| Conread position: | 128-310 |
| Cow position: | chr2:78912392-78912214 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 34 |
| Conread position: | 143-332 |
| Cow position: | chr2:16522030-16522212 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 152-323 |
| Cow position: | chr2:12910625-12910793 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 161-314 |
| Cow position: | chr2:44197680-44197528 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 162-325 |
| Cow position: | chr2:59592563-59592399 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 156 |
| Conread position: | 172-300 |
| Cow position: | chr2:884096-883967 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 172-327 |
| Cow position: | chr2:71121693-71121848 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 174-332 |
| Cow position: | chr2:20886650-20886495 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 175-332 |
| Cow position: | chr2:45470945-45471103 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 130 |
| Conread position: | 176-324 |
| Cow position: | chr2:36213893-36213747 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 177-304 |
| Cow position: | chr2:37155547-37155422 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 182-328 |
| Cow position: | chr2:51809170-51809020 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 190-306 |
| Cow position: | chr2:65462844-65462728 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-313 |
| Cow position: | chr2:56017753-56017628 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 226-318 |
| Cow position: | chr2:77968038-77967946 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 81 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.