Cow genome map
| Conread name: | Mixn-0036c18 |
| Conread position: | 1-231 |
| Cow position: | chr3:85086119-85086331 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 1-243 |
| Cow position: | chr3:56164017-56164261 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 23, 165 |
| Conread position: | 1-305 |
| Cow position: | chr3:60854590-60854287 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 1-310 |
| Cow position: | chr3:41861087-41860799 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 23, 89 |
| Conread position: | 1-310 |
| Cow position: | chr3:74846472-74846160 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 131 |
| Conread position: | 1-313 |
| Cow position: | chr3:21332552-21332254 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 23, 74 |
| Conread position: | 1-314 |
| Cow position: | chr3:24532069-24532388 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 188 |
| Conread position: | 1-314 |
| Cow position: | chr3:26581819-26581503 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 78 |
| Conread position: | 1-315 |
| Cow position: | chr3:32773449-32773761 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 83 |
| Conread position: | 1-320 |
| Cow position: | chr3:68127350-68127661 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 235 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 23, 102 |
| Conread position: | 1-324 |
| Cow position: | chr3:77468208-77468538 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 116 |
| Conread position: | 1-325 |
| Cow position: | chr3:60947939-60947621 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 92 |
| Conread position: | 1-326 |
| Cow position: | chr3:56042461-56042151 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 1-327 |
| Cow position: | chr3:12311331-12311658 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 1-329 |
| Cow position: | chr3:8753717-8754036 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 110 |
| Conread position: | 1-331 |
| Cow position: | chr3:17519546-17519212 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 247 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 24, 101 |
| Conread position: | 1-331 |
| Cow position: | chr3:23274710-23274388 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 37 |
| Conread position: | 2-250 |
| Cow position: | chr3:47497772-47498019 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 25, 164 |
| Conread position: | 2-331 |
| Cow position: | chr3:3690440-3690126 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 29, 66 |
| Conread position: | 3-246 |
| Cow position: | chr3:65392316-65392567 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 21, 156 |
| Conread position: | 3-303 |
| Cow position: | chr3:79315437-79315731 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 151 |
| Conread position: | 3-314 |
| Cow position: | chr3:5084867-5084577 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 3-314 |
| Cow position: | chr3:23478482-23478798 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 28, 101 |
| Conread position: | 3-314 |
| Cow position: | chr3:35029164-35028838 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 17, 83 |
| Conread position: | 3-314 |
| Cow position: | chr3:50499837-50500126 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 58 |
| Conread position: | 3-314 |
| Cow position: | chr3:55107159-55106852 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 28, 72 |
| Conread position: | 3-320 |
| Cow position: | chr3:54329093-54328788 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 31, 142 |
| Conread position: | 3-326 |
| Cow position: | chr3:12531858-12531540 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 25 |
| Conread position: | 3-332 |
| Cow position: | chr3:45641760-45642078 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 15, 106 |
| Conread position: | 4-304 |
| Cow position: | chr3:16056483-16056175 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 151 |
| Conread position: | 4-306 |
| Cow position: | chr3:27347107-27346804 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 143 |
| Conread position: | 4-310 |
| Cow position: | chr3:27633754-27633441 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 102 |
| Conread position: | 5-303 |
| Cow position: | chr3:43967157-43966865 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 19, 146 |
| Conread position: | 8-322 |
| Cow position: | chr3:15091147-15091441 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 12-330 |
| Cow position: | chr3:22054358-22054055 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 12, 97 |
| Conread position: | 13-329 |
| Cow position: | chr3:78442625-78442302 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 95 |
| Conread position: | 17-330 |
| Cow position: | chr3:2284957-2285269 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 105 |
| Conread position: | 20-303 |
| Cow position: | chr3:82543792-82544062 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 46, 80 |
| Conread position: | 21-325 |
| Cow position: | chr3:13526908-13527186 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 76, 28 |
| Conread position: | 23-311 |
| Cow position: | chr3:36515070-36514799 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 88 |
| Conread position: | 25-320 |
| Cow position: | chr3:39385822-39385536 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 29-270 |
| Cow position: | chr3:73418335-73418583 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 16, 76 |
| Conread position: | 32-324 |
| Cow position: | chr3:13727068-13726760 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 291 |
| Conread position: | 36-312 |
| Cow position: | chr3:34165363-34165088 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 71 |
| Conread position: | 38-322 |
| Cow position: | chr3:1549601-1549889 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 8, 68 |
| Conread position: | 39-324 |
| Cow position: | chr3:31528136-31528400 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 42-332 |
| Cow position: | chr3:62812677-62812398 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 52-266 |
| Cow position: | chr3:6798690-6798480 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 112 |
| Conread position: | 62-314 |
| Cow position: | chr3:74724123-74723871 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 63-306 |
| Cow position: | chr3:77589713-77589943 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 64-320 |
| Cow position: | chr3:73154280-73154520 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 64-327 |
| Cow position: | chr3:43004485-43004220 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 42 |
| Conread position: | 75-313 |
| Cow position: | chr3:83760967-83760742 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 51 |
| Conread position: | 84-306 |
| Cow position: | chr3:1339247-1339461 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 98-327 |
| Cow position: | chr3:31286545-31286326 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 178 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 46, 12 |
| Conread position: | 98-331 |
| Cow position: | chr3:21282793-21283015 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 99-250 |
| Cow position: | chr3:27879572-27879425 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 93, 63 |
| Conread position: | 99-306 |
| Cow position: | chr3:52817358-52817561 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 99-329 |
| Cow position: | chr3:52657852-52658073 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 147, 49 |
| Conread position: | 102-276 |
| Cow position: | chr3:5545316-5545481 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 105-306 |
| Cow position: | chr3:83393178-83392971 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 105-314 |
| Cow position: | chr3:76466094-76466304 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 20 |
| Conread position: | 112-298 |
| Cow position: | chr3:69148172-69147991 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 112-332 |
| Cow position: | chr3:45735545-45735760 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 12, 57 |
| Conread position: | 125-331 |
| Cow position: | chr3:49414366-49414167 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 137-318 |
| Cow position: | chr3:5317371-5317188 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 152-324 |
| Cow position: | chr3:36538493-36538316 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 56 |
| Conread position: | 154-321 |
| Cow position: | chr3:74436317-74436484 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 161, 12 |
| Conread position: | 168-306 |
| Cow position: | chr3:80421263-80421125 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 107, 9 |
| Conread position: | 168-314 |
| Cow position: | chr3:887591-887735 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 58, 84 |
| Conread position: | 171-325 |
| Cow position: | chr3:58097781-58097631 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 183-309 |
| Cow position: | chr3:19559818-19559692 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 56, 74 |
| Conread position: | 185-318 |
| Cow position: | chr3:77158833-77158966 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 127, 116 |
| Conread position: | 191-313 |
| Cow position: | chr3:39272734-39272612 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.