Cow genome map
| Conread name: | Mixn-0036c18 |
| Conread position: | 1-290 |
| Cow position: | chr4:47511297-47511589 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 169 |
| Conread position: | 1-298 |
| Cow position: | chr4:22507110-22506817 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 107 |
| Conread position: | 1-300 |
| Cow position: | chr4:2237966-2237690 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 23, 76 |
| Conread position: | 1-306 |
| Cow position: | chr4:36759542-36759861 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 164 |
| Conread position: | 1-313 |
| Cow position: | chr4:15046137-15046465 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 23, 165 |
| Conread position: | 1-313 |
| Cow position: | chr4:20311944-20312250 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 23, 167 |
| Conread position: | 1-314 |
| Cow position: | chr4:9822422-9822730 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 23, 100 |
| Conread position: | 1-314 |
| Cow position: | chr4:57565950-57565639 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 156 |
| Conread position: | 1-314 |
| Cow position: | chr4:58873527-58873825 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 1-319 |
| Cow position: | chr4:2443622-2443308 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 1-320 |
| Cow position: | chr4:5188736-5188417 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 92 |
| Conread position: | 1-320 |
| Cow position: | chr4:57221947-57221626 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 27, 62 |
| Conread position: | 1-320 |
| Cow position: | chr4:58432691-58432375 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 55 |
| Conread position: | 1-322 |
| Cow position: | chr4:29067367-29067062 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 90 |
| Conread position: | 1-327 |
| Cow position: | chr4:34043349-34043005 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-328 |
| Cow position: | chr4:5784001-5784313 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 91 |
| Conread position: | 1-328 |
| Cow position: | chr4:58856239-58855919 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 23, 155 |
| Conread position: | 1-332 |
| Cow position: | chr4:41975447-41975123 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 54 |
| Conread position: | 1-332 |
| Cow position: | chr4:53641598-53641914 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 237, 36 |
| Conread position: | 2-269 |
| Cow position: | chr4:20925733-20925471 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 9-310 |
| Cow position: | chr4:57652489-57652796 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 82 |
| Conread position: | 9-324 |
| Cow position: | chr4:63928537-63928225 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 67 |
| Conread position: | 13-315 |
| Cow position: | chr4:47087129-47086815 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 11, 143 |
| Conread position: | 13-326 |
| Cow position: | chr4:31003075-31002759 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 100 |
| Conread position: | 14-310 |
| Cow position: | chr4:9128028-9128327 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 21-332 |
| Cow position: | chr4:32140977-32140673 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 53 |
| Conread position: | 24-306 |
| Cow position: | chr4:35367278-35366986 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 25-314 |
| Cow position: | chr4:6630024-6629747 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 72, 135 |
| Conread position: | 33-311 |
| Cow position: | chr4:49741864-49742139 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 13, 121 |
| Conread position: | 34-230 |
| Cow position: | chr4:51905574-51905773 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 118 |
| Conread position: | 43-314 |
| Cow position: | chr4:5978520-5978256 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 66 |
| Conread position: | 56-332 |
| Cow position: | chr4:31586272-31586003 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 62-271 |
| Cow position: | chr4:9089745-9089538 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 62-309 |
| Cow position: | chr4:4519488-4519727 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 62-314 |
| Cow position: | chr4:54347538-54347776 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 62-328 |
| Cow position: | chr4:5886675-5886933 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 35, 88 |
| Conread position: | 68-275 |
| Cow position: | chr4:4192542-4192741 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 32, 44 |
| Conread position: | 68-318 |
| Cow position: | chr4:52697218-52697458 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 240, 54 |
| Conread position: | 96-328 |
| Cow position: | chr4:36856977-36857207 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 5, 97 |
| Conread position: | 99-314 |
| Cow position: | chr4:49881617-49881410 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 70, 51 |
| Conread position: | 99-332 |
| Cow position: | chr4:58830489-58830274 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 212, 47 |
| Conread position: | 100-324 |
| Cow position: | chr4:27444422-27444646 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 75, 48 |
| Conread position: | 100-332 |
| Cow position: | chr4:59809575-59809355 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 61 |
| Conread position: | 101-292 |
| Cow position: | chr4:4029204-4029392 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 106-306 |
| Cow position: | chr4:23536346-23536562 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 109-327 |
| Cow position: | chr4:52597172-52596953 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 142, 48 |
| Conread position: | 152-306 |
| Cow position: | chr4:22891679-22891525 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 157-324 |
| Cow position: | chr4:45401075-45401240 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 81, 5 |
| Conread position: | 161-304 |
| Cow position: | chr4:6793917-6794058 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 167-329 |
| Cow position: | chr4:60639778-60639617 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 168-332 |
| Cow position: | chr4:8615353-8615189 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 105 |
| Conread position: | 176-312 |
| Cow position: | chr4:61593718-61593583 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 194-330 |
| Cow position: | chr4:48837247-48837111 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 69 |
| Conread position: | 217-328 |
| Cow position: | chr4:30792422-30792533 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.