Cow genome map

Conread name: Mixn-0036c18

Conread position: 1-238
Cow position: chr5:57127755-57127990 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 189
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 12, 98

Conread position: 1-247
Cow position: chr5:56109857-56109605 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 176
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 33, 27

Conread position: 1-270
Cow position: chr5:13575446-13575180 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 199
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 23, 133

Conread position: 1-277
Cow position: chr5:60968734-60969017 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 107

Conread position: 1-292
Cow position: chr5:34483241-34482958 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 21, 107

Conread position: 1-305
Cow position: chr5:71278956-71279253 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 221
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 37, 27

Conread position: 1-310
Cow position: chr5:27679520-27679212 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 21

Conread position: 1-314
Cow position: chr5:29431345-29431055 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 215
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 23, 54

Conread position: 1-314
Cow position: chr5:38274074-38274398 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 222
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 22, 0

Conread position: 1-324
Cow position: chr5:21145929-21145600 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 112

Conread position: 1-325
Cow position: chr5:1304930-1304602 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 244
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 23, 37

Conread position: 1-328
Cow position: chr5:42587621-42587278 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 176

Conread position: 1-329
Cow position: chr5:63620859-63621175 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 229
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 23, 36

Conread position: 1-330
Cow position: chr5:51953174-51953506 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 173

Conread position: 1-332
Cow position: chr5:33570182-33570482 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 239
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 26, 15

Conread position: 2-293
Cow position: chr5:56741963-56742243 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 218
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 43, 101

Conread position: 2-308
Cow position: chr5:35748844-35749145 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 101

Conread position: 2-320
Cow position: chr5:67463519-67463834 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 18

Conread position: 2-322
Cow position: chr5:51076324-51076000 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 92

Conread position: 3-292
Cow position: chr5:15882151-15881859 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 208
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 21, 91

Conread position: 3-314
Cow position: chr5:15705253-15704951 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 229
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 21, 40

Conread position: 3-319
Cow position: chr5:14072269-14071963 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 51

Conread position: 3-320
Cow position: chr5:28770567-28770878 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 234
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 19, 40

Conread position: 3-325
Cow position: chr5:11235880-11236205 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 237
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 21, 158

Conread position: 3-329
Cow position: chr5:9585435-9585122 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 21, 51

Conread position: 3-329
Cow position: chr5:12329391-12329069 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 235
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 22, 116

Conread position: 4-304
Cow position: chr5:58842412-58842706 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 218
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 20, 152

Conread position: 4-314
Cow position: chr5:26562447-26562750 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 101

Conread position: 8-323
Cow position: chr5:25355312-25355622 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 237
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 16, 126

Conread position: 9-187
Cow position: chr5:25925564-25925383 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 143
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 15, 148

Conread position: 11-306
Cow position: chr5:40978266-40978566 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 198
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 38, 17

Conread position: 12-314
Cow position: chr5:37048377-37048657 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 215
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 15, 27

Conread position: 12-328
Cow position: chr5:23234793-23235088 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 233
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 16, 26

Conread position: 14-314
Cow position: chr5:26098363-26098074 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 225
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 10, 81

Conread position: 16-232
Cow position: chr5:34168459-34168679 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 154
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 8, 46

Conread position: 32-324
Cow position: chr5:12581044-12581315 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 215
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 40, 13

Conread position: 32-328
Cow position: chr5:9025510-9025811 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 136

Conread position: 38-266
Cow position: chr5:39206955-39206729 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 164
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 7, 62

Conread position: 38-320
Cow position: chr5:29029683-29029963 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 215
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 26, 17

Conread position: 39-327
Cow position: chr5:15808580-15808290 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 219
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 6, 78

Conread position: 40-328
Cow position: chr5:1286703-1286993 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 200
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 25, 117

Conread position: 45-314
Cow position: chr5:39118509-39118759 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 191
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 42, 0

Conread position: 49-276
Cow position: chr5:20717475-20717693 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 164
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 55

Conread position: 49-310
Cow position: chr5:54157800-54158059 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 48, 128

Conread position: 49-318
Cow position: chr5:60725613-60725881 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 203
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 17, 55

Conread position: 55-314
Cow position: chr5:31551191-31551443 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 192
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 11, 45

Conread position: 56-293
Cow position: chr5:18379612-18379835 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 41, 80

Conread position: 62-328
Cow position: chr5:70532573-70532856 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 196
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 35, 0

Conread position: 62-330
Cow position: chr5:20648893-20648630 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 22, 41

Conread position: 64-305
Cow position: chr5:19299108-19298870 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 189
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 33, 105

Conread position: 64-314
Cow position: chr5:47698021-47697774 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 190
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 25, 78

Conread position: 64-319
Cow position: chr5:56826411-56826662 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 190
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 176, 71

Conread position: 65-320
Cow position: chr5:33516413-33516152 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 194
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 32, 105

Conread position: 66-270
Cow position: chr5:70253033-70253238 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 31, 172

Conread position: 76-327
Cow position: chr5:13156680-13156429 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 181
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 8, 61

Conread position: 79-314
Cow position: chr5:37624457-37624690 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 13, 84

Conread position: 84-314
Cow position: chr5:57490544-57490770 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 81, 15

Conread position: 92-276
Cow position: chr5:31943989-31944169 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 146, 30

Conread position: 94-306
Cow position: chr5:33443251-33443032 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 55, 168

Conread position: 99-321
Cow position: chr5:27493139-27493356 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 172
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 53, 0

Conread position: 99-324
Cow position: chr5:9232863-9232653 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 62, 0

Conread position: 99-331
Cow position: chr5:67579458-67579684 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 100-312
Cow position: chr5:3752133-3752360 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 45, 22

Conread position: 101-310
Cow position: chr5:50159636-50159829 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 162
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 160, 21

Conread position: 104-317
Cow position: chr5:54761441-54761649 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 163
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 146, 46

Conread position: 109-302
Cow position: chr5:38911568-38911771 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 111-331
Cow position: chr5:58384704-58384917 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 167
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 80, 29

Conread position: 112-314
Cow position: chr5:7584423-7584229 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 28, 0

Conread position: 112-327
Cow position: chr5:12602310-12602520 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 60, 0

Conread position: 114-330
Cow position: chr5:49330287-49330505 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 165
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 41, 107

Conread position: 118-310
Cow position: chr5:31461624-31461819 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 33, 45

Conread position: 145-331
Cow position: chr5:67001888-67002070 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 67, 7

Conread position: 158-314
Cow position: chr5:62580438-62580593 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 8, 0

Conread position: 161-280
Cow position: chr5:37610734-37610854 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 100, 0

Conread position: 166-314
Cow position: chr5:57629827-57629679 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 168-324
Cow position: chr5:624757-624913 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 58, 17

Conread position: 171-321
Cow position: chr5:8202655-8202809 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 171-323
Cow position: chr5:16211298-16211140 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 172-306
Cow position: chr5:65590635-65590501 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 172-329
Cow position: chr5:28370933-28370787 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 181-310
Cow position: chr5:59640055-59640184 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 184-332
Cow position: chr5:55856601-55856457 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 124, 29

Conread position: 185-327
Cow position: chr5:62862815-62862672 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 127, 0

Conread position: 186-327
Cow position: chr5:5194561-5194698 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 194-327
Cow position: chr5:34470889-34470753 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 194-330
Cow position: chr5:60472082-60471946 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 47, 76

Conread position: 215-328
Cow position: chr5:10785015-10784902 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 217-326
Cow position: chr5:9505247-9505138 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 64, 90

Conread position: 227-320
Cow position: chr5:33564980-33565073 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 79
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.