Cow genome map
| Conread name: | Mixn-0036c18 |
| Conread position: | 1-236 |
| Cow position: | chr6:812089-811847 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-237 |
| Cow position: | chr6:3374107-3373862 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 16, 132 |
| Conread position: | 1-272 |
| Cow position: | chr6:32428764-32429029 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 28, 51 |
| Conread position: | 1-277 |
| Cow position: | chr6:44377587-44377866 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 120 |
| Conread position: | 1-279 |
| Cow position: | chr6:39917490-39917762 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 21, 48 |
| Conread position: | 1-308 |
| Cow position: | chr6:53416647-53416330 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 163 |
| Conread position: | 1-310 |
| Cow position: | chr6:31687871-31687565 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 146 |
| Conread position: | 1-314 |
| Cow position: | chr6:1077104-1076790 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 53, 180 |
| Conread position: | 1-314 |
| Cow position: | chr6:20332629-20332939 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 168 |
| Conread position: | 1-320 |
| Cow position: | chr6:29078055-29078365 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 44, 17 |
| Conread position: | 1-321 |
| Cow position: | chr6:29299876-29300181 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 135 |
| Conread position: | 1-326 |
| Cow position: | chr6:23891873-23892195 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 1-326 |
| Cow position: | chr6:45617109-45616795 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 23, 92 |
| Conread position: | 1-327 |
| Cow position: | chr6:35698100-35697772 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 244 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 65, 17 |
| Conread position: | 1-332 |
| Cow position: | chr6:6635465-6635790 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 42 |
| Conread position: | 2-226 |
| Cow position: | chr6:65227958-65227730 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 146 |
| Conread position: | 2-306 |
| Cow position: | chr6:66677034-66677356 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 11, 239 |
| Conread position: | 2-314 |
| Cow position: | chr6:54930398-54930088 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 92 |
| Conread position: | 2-326 |
| Cow position: | chr6:6722467-6722789 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 95, 166 |
| Conread position: | 3-272 |
| Cow position: | chr6:22098343-22098079 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 65 |
| Conread position: | 3-276 |
| Cow position: | chr6:35831866-35832146 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 129 |
| Conread position: | 3-309 |
| Cow position: | chr6:28087191-28086883 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 21, 91 |
| Conread position: | 3-309 |
| Cow position: | chr6:58593817-58593519 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 17, 77 |
| Conread position: | 3-310 |
| Cow position: | chr6:44389928-44389621 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 113 |
| Conread position: | 3-314 |
| Cow position: | chr6:45692340-45692037 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 100 |
| Conread position: | 3-315 |
| Cow position: | chr6:62754167-62753865 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 21, 40 |
| Conread position: | 5-299 |
| Cow position: | chr6:66840189-66840484 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 19, 165 |
| Conread position: | 6-332 |
| Cow position: | chr6:5275665-5275330 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 234 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 18, 307 |
| Conread position: | 7-319 |
| Cow position: | chr6:5678723-5678402 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 17, 56 |
| Conread position: | 8-310 |
| Cow position: | chr6:3017795-3018095 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 107 |
| Conread position: | 9-273 |
| Cow position: | chr6:55662057-55662325 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 15, 152 |
| Conread position: | 12-310 |
| Cow position: | chr6:11159664-11159367 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 42, 64 |
| Conread position: | 12-325 |
| Cow position: | chr6:41557811-41558127 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 161 |
| Conread position: | 13-264 |
| Cow position: | chr6:5500729-5500481 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 45 |
| Conread position: | 13-327 |
| Cow position: | chr6:26692798-26692485 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 11, 141 |
| Conread position: | 21-314 |
| Cow position: | chr6:14279995-14280291 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 109 |
| Conread position: | 32-314 |
| Cow position: | chr6:20748738-20749017 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 35-332 |
| Cow position: | chr6:35126750-35126463 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 55 |
| Conread position: | 40-274 |
| Cow position: | chr6:62506713-62506954 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 35, 115 |
| Conread position: | 44-290 |
| Cow position: | chr6:37085258-37085500 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 28, 106 |
| Conread position: | 49-328 |
| Cow position: | chr6:27711000-27711278 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 62-301 |
| Cow position: | chr6:34556894-34557128 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 62-329 |
| Cow position: | chr6:43596163-43595899 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 64-306 |
| Cow position: | chr6:24496544-24496305 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 64-324 |
| Cow position: | chr6:40241072-40241320 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 99-310 |
| Cow position: | chr6:50502019-50502218 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 100-308 |
| Cow position: | chr6:44771257-44771447 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 100-325 |
| Cow position: | chr6:1940074-1939848 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 56, 47 |
| Conread position: | 105-314 |
| Cow position: | chr6:4666073-4665876 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 112-300 |
| Cow position: | chr6:55398235-55398414 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 112-332 |
| Cow position: | chr6:3741916-3742119 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 152, 13 |
| Conread position: | 115-314 |
| Cow position: | chr6:15261025-15261219 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 103, 44 |
| Conread position: | 115-314 |
| Cow position: | chr6:15262070-15262264 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 103, 44 |
| Conread position: | 117-314 |
| Cow position: | chr6:69274115-69273911 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 27, 179 |
| Conread position: | 127-310 |
| Cow position: | chr6:19715799-19715617 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 87, 32 |
| Conread position: | 133-323 |
| Cow position: | chr6:24260355-24260171 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 158-331 |
| Cow position: | chr6:18562114-18561951 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 159-314 |
| Cow position: | chr6:3936150-3935994 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 162-313 |
| Cow position: | chr6:35266009-35265865 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 166-320 |
| Cow position: | chr6:6244258-6244109 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 25, 68 |
| Conread position: | 168-313 |
| Cow position: | chr6:5516862-5516715 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 171-306 |
| Cow position: | chr6:30344963-30345098 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 25, 109 |
| Conread position: | 172-312 |
| Cow position: | chr6:23648434-23648298 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 172-325 |
| Cow position: | chr6:28008965-28008813 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 172-332 |
| Cow position: | chr6:14162129-14161969 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 173-314 |
| Cow position: | chr6:13092584-13092443 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 174-328 |
| Cow position: | chr6:35406858-35406702 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 178-310 |
| Cow position: | chr6:24337576-24337444 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 180-314 |
| Cow position: | chr6:30287043-30287177 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 182-332 |
| Cow position: | chr6:27457725-27457884 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 183-320 |
| Cow position: | chr6:16495111-16494974 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 100, 50 |
| Conread position: | 200-321 |
| Cow position: | chr6:40295648-40295527 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 10, 103 |
Show alignments to all cow chromosomes.