Cow genome map
| Conread name: | Mixn-0036c18 |
| Conread position: | 1-197 |
| Cow position: | chr9:35527454-35527262 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 23, 85 |
| Conread position: | 1-204 |
| Cow position: | chr9:26197891-26198088 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 23, 87 |
| Conread position: | 1-290 |
| Cow position: | chr9:6557565-6557280 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 1-314 |
| Cow position: | chr9:18570640-18570953 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 154 |
| Conread position: | 1-321 |
| Cow position: | chr9:1527052-1527375 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 154 |
| Conread position: | 1-321 |
| Cow position: | chr9:2638579-2638891 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 231 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 23, 51 |
| Conread position: | 1-322 |
| Cow position: | chr9:6109638-6109334 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 23, 54 |
| Conread position: | 1-324 |
| Cow position: | chr9:417050-416707 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 25, 107 |
| Conread position: | 1-328 |
| Cow position: | chr9:34188726-34188402 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 93 |
| Conread position: | 1-331 |
| Cow position: | chr9:12565125-12564806 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 1-332 |
| Cow position: | chr9:1517555-1517873 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 50, 8 |
| Conread position: | 1-332 |
| Cow position: | chr9:25502763-25503088 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 23, 153 |
| Conread position: | 1-332 |
| Cow position: | chr9:34763106-34763444 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 168 |
| Conread position: | 2-232 |
| Cow position: | chr9:53597059-53597300 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 23, 105 |
| Conread position: | 2-299 |
| Cow position: | chr9:38698228-38697938 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 2-306 |
| Cow position: | chr9:10003798-10003492 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 20, 105 |
| Conread position: | 2-322 |
| Cow position: | chr9:41318237-41318560 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 130 |
| Conread position: | 2-332 |
| Cow position: | chr9:39001510-39001194 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 22, 111 |
| Conread position: | 3-298 |
| Cow position: | chr9:12199162-12199460 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 122 |
| Conread position: | 3-306 |
| Cow position: | chr9:47200478-47200769 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 21, 47 |
| Conread position: | 3-310 |
| Cow position: | chr9:8234343-8234049 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 88 |
| Conread position: | 3-310 |
| Cow position: | chr9:15855295-15855599 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 100 |
| Conread position: | 3-332 |
| Cow position: | chr9:12183465-12183143 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 42 |
| Conread position: | 4-320 |
| Cow position: | chr9:3582873-3583208 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 23, 94 |
| Conread position: | 7-326 |
| Cow position: | chr9:56411387-56411697 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 17, 127 |
| Conread position: | 8-314 |
| Cow position: | chr9:4834716-4834420 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 9-314 |
| Cow position: | chr9:25812572-25812860 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 12-300 |
| Cow position: | chr9:4985631-4985917 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 33, 90 |
| Conread position: | 14-319 |
| Cow position: | chr9:36508357-36508669 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 19-265 |
| Cow position: | chr9:58125909-58125661 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 20-304 |
| Cow position: | chr9:43537044-43536756 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 25, 80 |
| Conread position: | 21-332 |
| Cow position: | chr9:13072089-13071779 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 31, 69 |
| Conread position: | 42-309 |
| Cow position: | chr9:22376967-22376699 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 25, 126 |
| Conread position: | 43-307 |
| Cow position: | chr9:45140597-45140330 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 23, 49 |
| Conread position: | 43-319 |
| Cow position: | chr9:26585410-26585147 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 20, 12 |
| Conread position: | 43-324 |
| Cow position: | chr9:19835683-19835967 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 22, 65 |
| Conread position: | 51-314 |
| Cow position: | chr9:4915370-4915642 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 15, 69 |
| Conread position: | 86-314 |
| Cow position: | chr9:39994107-39994329 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 90-322 |
| Cow position: | chr9:55203008-55203233 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 99-278 |
| Cow position: | chr9:19081957-19082128 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 64 |
| Conread position: | 99-321 |
| Cow position: | chr9:14731981-14731768 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 100-319 |
| Cow position: | chr9:36587067-36587290 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 43, 146 |
| Conread position: | 105-314 |
| Cow position: | chr9:64606098-64606302 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 128, 15 |
| Conread position: | 105-317 |
| Cow position: | chr9:23294275-23294073 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 203, 35 |
| Conread position: | 106-277 |
| Cow position: | chr9:59114088-59113914 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 106-313 |
| Cow position: | chr9:62721204-62721406 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 70, 43 |
| Conread position: | 111-327 |
| Cow position: | chr9:43609323-43609104 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 127, 55 |
| Conread position: | 113-309 |
| Cow position: | chr9:40923021-40923215 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 114-276 |
| Cow position: | chr9:42366454-42366297 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 156-320 |
| Cow position: | chr9:35795022-35794859 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 157-328 |
| Cow position: | chr9:56795132-56795299 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 13, 51 |
| Conread position: | 162-314 |
| Cow position: | chr9:20394649-20394800 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 109, 9 |
| Conread position: | 162-330 |
| Cow position: | chr9:5622457-5622626 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 163-329 |
| Cow position: | chr9:48076140-48076304 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 118, 145 |
| Conread position: | 172-306 |
| Cow position: | chr9:35224538-35224402 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 172-326 |
| Cow position: | chr9:33326189-33326036 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 181-314 |
| Cow position: | chr9:35527055-35526922 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-332 |
| Cow position: | chr9:37301901-37301759 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 195-319 |
| Cow position: | chr9:8779685-8779809 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.