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Cow genome map

           
Conread name:
           
Mus1-POSM0100014_A02F
        

               
Conread position:
               
1-479
               

               
Cow position:
               
chr22:18259436-18258970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
54, 58
               

               
Conread position:
               
2-483
               

               
Cow position:
               
chr22:15490874-15490397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 108
               

               
Conread position:
               
5-494
               

               
Cow position:
               
chr22:18196725-18196237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 26
               

               
Conread position:
               
6-489
               

               
Cow position:
               
chr22:40048775-40048295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
5, 110
               

               
Conread position:
               
7-461
               

               
Cow position:
               
chr22:16533288-16532840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 98
               

               
Conread position:
               
8-414
               

               
Cow position:
               
chr22:12316019-12315618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 23
               

               
Conread position:
               
8-479
               

               
Cow position:
               
chr22:11613634-11613170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 38
               

               
Conread position:
               
10-471
               

               
Cow position:
               
chr22:17949766-17950207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 46
               

               
Conread position:
               
10-477
               

               
Cow position:
               
chr22:18926567-18926095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 96
               

               
Conread position:
               
10-479
               

               
Cow position:
               
chr22:10421268-10420762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 316
               

               
Conread position:
               
11-252
               

               
Cow position:
               
chr22:12188265-12188510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 20
               

               
Conread position:
               
11-252
               

               
Cow position:
               
chr22:12195351-12195597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
45, 20
               

               
Conread position:
               
11-354
               

               
Cow position:
               
chr22:39602500-39602146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
24, 107
               

               
Conread position:
               
12-251
               

               
Cow position:
               
chr22:35215760-35215519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
40, 84
               

               
Conread position:
               
12-302
               

               
Cow position:
               
chr22:30607068-30606780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 100
               

               
Conread position:
               
12-311
               

               
Cow position:
               
chr22:18933505-18933813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
12-382
               

               
Cow position:
               
chr22:33399280-33399642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
40, 97
               

               
Conread position:
               
12-454
               

               
Cow position:
               
chr22:36539450-36539906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 60
               

               
Conread position:
               
12-457
               

               
Cow position:
               
chr22:32661723-32661276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 157
               

               
Conread position:
               
12-471
               

               
Cow position:
               
chr22:10983571-10983094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
44, 19
               

               
Conread position:
               
12-479
               

               
Cow position:
               
chr22:4583770-4583312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 84
               

               
Conread position:
               
12-479
               

               
Cow position:
               
chr22:37145529-37145088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
443, 57
               

               
Conread position:
               
12-484
               

               
Cow position:
               
chr22:5595599-5596052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 101
               

               
Conread position:
               
13-234
               

               
Cow position:
               
chr22:1821381-1821597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
57, 42
               

               
Conread position:
               
13-244
               

               
Cow position:
               
chr22:23265441-23265675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 83
               

               
Conread position:
               
13-290
               

               
Cow position:
               
chr22:8287388-8287119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
38, 83
               

               
Conread position:
               
13-307
               

               
Cow position:
               
chr22:7140856-7140553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 97
               

               
Conread position:
               
13-307
               

               
Cow position:
               
chr22:25690066-25690370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
23, 87
               

               
Conread position:
               
13-358
               

               
Cow position:
               
chr22:27681932-27681578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
39, 99
               

               
Conread position:
               
13-392
               

               
Cow position:
               
chr22:6096808-6097198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
39, 83
               

               
Conread position:
               
13-392
               

               
Cow position:
               
chr22:8090328-8090700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
41, 18
               

               
Conread position:
               
13-395
               

               
Cow position:
               
chr22:32698971-32698586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 83
               

               
Conread position:
               
13-409
               

               
Cow position:
               
chr22:36432765-36433158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
13-448
               

               
Cow position:
               
chr22:1289322-1289746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
79, 43
               

               
Conread position:
               
13-456
               

               
Cow position:
               
chr22:25236920-25237376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
16, 139
               

               
Conread position:
               
13-457
               

               
Cow position:
               
chr22:40387359-40386936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 60
               

               
Conread position:
               
13-474
               

               
Cow position:
               
chr22:6754055-6754508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 100
               

               
Conread position:
               
13-477
               

               
Cow position:
               
chr22:1309530-1309983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 42
               

               
Conread position:
               
13-478
               

               
Cow position:
               
chr22:3987730-3987255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 89
               

               
Conread position:
               
13-479
               

               
Cow position:
               
chr22:6622040-6622503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 93
               

               
Conread position:
               
13-479
               

               
Cow position:
               
chr22:25205756-25206227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 132
               

               
Conread position:
               
13-479
               

               
Cow position:
               
chr22:31195267-31194814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
17, 112
               

               
Conread position:
               
13-479
               

               
Cow position:
               
chr22:33447870-33448333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 99
               

               
Conread position:
               
13-484
               

               
Cow position:
               
chr22:14142916-14143369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 81
               

               
Conread position:
               
13-485
               

               
Cow position:
               
chr22:4060740-4061203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
13-485
               

               
Cow position:
               
chr22:13687907-13688376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
13-485
               

               
Cow position:
               
chr22:29642320-29641845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 100
               

               
Conread position:
               
13-493
               

               
Cow position:
               
chr22:12573413-12572931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 83
               

               
Conread position:
               
14-304
               

               
Cow position:
               
chr22:3282620-3282912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
16, 60
               

               
Conread position:
               
14-414
               

               
Cow position:
               
chr22:12803181-12803578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
236, 42
               

               
Conread position:
               
14-461
               

               
Cow position:
               
chr22:37139635-37139207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
56, 79
               

               
Conread position:
               
14-483
               

               
Cow position:
               
chr22:4535115-4535588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
15-294
               

               
Cow position:
               
chr22:16541443-16541728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 91
               

               
Conread position:
               
15-414
               

               
Cow position:
               
chr22:1849281-1848871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 81
               

               
Conread position:
               
15-455
               

               
Cow position:
               
chr22:10567513-10567925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
44, 77
               

               
Conread position:
               
15-474
               

               
Cow position:
               
chr22:16621398-16620920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 201
               

               
Conread position:
               
15-479
               

               
Cow position:
               
chr22:45132444-45132908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 56
               

               
Conread position:
               
15-489
               

               
Cow position:
               
chr22:22613308-22612843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 81
               

               
Conread position:
               
15-489
               

               
Cow position:
               
chr22:23980001-23980487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 94
               

               
Conread position:
               
15-490
               

               
Cow position:
               
chr22:37202054-37201588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 81
               

               
Conread position:
               
15-493
               

               
Cow position:
               
chr22:26339970-26339487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 286
               

               
Conread position:
               
15-494
               

               
Cow position:
               
chr22:31870054-31870520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 23
               

               
Conread position:
               
16-204
               

               
Cow position:
               
chr22:43130936-43131125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 88
               

               
Conread position:
               
16-252
               

               
Cow position:
               
chr22:4156611-4156847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
36, 74
               

               
Conread position:
               
16-477
               

               
Cow position:
               
chr22:33485420-33485859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
54, 77
               

               
Conread position:
               
16-479
               

               
Cow position:
               
chr22:8733141-8733580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 40
               

               
Conread position:
               
16-479
               

               
Cow position:
               
chr22:13286653-13286185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
16-479
               

               
Cow position:
               
chr22:40374811-40374348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 74
               

               
Conread position:
               
17-308
               

               
Cow position:
               
chr22:14006382-14006091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
17-336
               

               
Cow position:
               
chr22:39215408-39215733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
38, 95
               

               
Conread position:
               
17-339
               

               
Cow position:
               
chr22:15914842-15915163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
38, 99
               

               
Conread position:
               
17-373
               

               
Cow position:
               
chr22:24916034-24915682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
214, 46
               

               
Conread position:
               
17-376
               

               
Cow position:
               
chr22:41496183-41495821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
35, 50
               

               
Conread position:
               
17-383
               

               
Cow position:
               
chr22:43131350-43131713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
35, 88
               

               
Conread position:
               
17-387
               

               
Cow position:
               
chr22:9668783-9668399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 67
               

               
Conread position:
               
17-409
               

               
Cow position:
               
chr22:34619012-34618615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 14
               

               
Conread position:
               
17-424
               

               
Cow position:
               
chr22:41898245-41898652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
17-425
               

               
Cow position:
               
chr22:15618811-15618411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
39, 78
               

               
Conread position:
               
17-443
               

               
Cow position:
               
chr22:15154206-15153785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
17-457
               

               
Cow position:
               
chr22:37066603-37067034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
53, 93
               

               
Conread position:
               
17-460
               

               
Cow position:
               
chr22:40349545-40349111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 89
               

               
Conread position:
               
17-461
               

               
Cow position:
               
chr22:7165172-7164714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 415
               

               
Conread position:
               
17-479
               

               
Cow position:
               
chr22:1065311-1064877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
17-479
               

               
Cow position:
               
chr22:8883214-8882766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
17-479
               

               
Cow position:
               
chr22:14091017-14091489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
39, 96
               

               
Conread position:
               
17-479
               

               
Cow position:
               
chr22:14372371-14371909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
17-479
               

               
Cow position:
               
chr22:16273845-16273376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 94
               

               
Conread position:
               
17-479
               

               
Cow position:
               
chr22:38313270-38313722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
17-483
               

               
Cow position:
               
chr22:21890162-21890621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 54
               

               
Conread position:
               
17-483
               

               
Cow position:
               
chr22:23806334-23806809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 96
               

               
Conread position:
               
17-484
               

               
Cow position:
               
chr22:11696991-11697472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 84
               

               
Conread position:
               
17-485
               

               
Cow position:
               
chr22:9372730-9372256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
17-490
               

               
Cow position:
               
chr22:1326622-1326150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
17-491
               

               
Cow position:
               
chr22:23804781-23805254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
237, 39
               

               
Conread position:
               
18-337
               

               
Cow position:
               
chr22:19891162-19890841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
52, 92
               

               
Conread position:
               
18-395
               

               
Cow position:
               
chr22:25764289-25764658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
18-424
               

               
Cow position:
               
chr22:23689002-23689410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
18-479
               

               
Cow position:
               
chr22:27322501-27322061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 45
               

               
Conread position:
               
19-304
               

               
Cow position:
               
chr22:12678219-12678506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
36, 91
               

               
Conread position:
               
19-333
               

               
Cow position:
               
chr22:6852379-6852698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 95
               

               
Conread position:
               
19-370
               

               
Cow position:
               
chr22:22553045-22553384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
19-414
               

               
Cow position:
               
chr22:12313621-12313226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
19-423
               

               
Cow position:
               
chr22:27274487-27274895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 219
               

               
Conread position:
               
19-426
               

               
Cow position:
               
chr22:8430092-8429677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
33, 106
               

               
Conread position:
               
19-455
               

               
Cow position:
               
chr22:10962758-10963193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
55, 33
               

               
Conread position:
               
19-477
               

               
Cow position:
               
chr22:30269603-30269159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 78
               

               
Conread position:
               
19-490
               

               
Cow position:
               
chr22:534691-534224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 37
               

               
Conread position:
               
20-479
               

               
Cow position:
               
chr22:644580-645018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 36
               

               
Conread position:
               
20-487
               

               
Cow position:
               
chr22:6327573-6328031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 74
               

               
Conread position:
               
21-435
               

               
Cow position:
               
chr22:3534131-3533734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
21-477
               

               
Cow position:
               
chr22:3325787-3325325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 77
               

               
Conread position:
               
21-478
               

               
Cow position:
               
chr22:16251365-16251820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 152
               

               
Conread position:
               
21-486
               

               
Cow position:
               
chr22:41829040-41829498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
21-490
               

               
Cow position:
               
chr22:7154075-7153620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 79
               

               
Conread position:
               
21-491
               

               
Cow position:
               
chr22:8324448-8323976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 128
               

               
Conread position:
               
22-476
               

               
Cow position:
               
chr22:28146876-28146429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
22-479
               

               
Cow position:
               
chr22:21012585-21012132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 62
               

               
Conread position:
               
22-485
               

               
Cow position:
               
chr22:38438959-38439422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 71
               

               
Conread position:
               
23-315
               

               
Cow position:
               
chr22:25254372-25254078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
33, 76
               

               
Conread position:
               
23-333
               

               
Cow position:
               
chr22:23735814-23736126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
34, 90
               

               
Conread position:
               
24-252
               

               
Cow position:
               
chr22:23372662-23372894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 180
               

               
Conread position:
               
24-252
               

               
Cow position:
               
chr22:47562908-47562673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
24-460
               

               
Cow position:
               
chr22:28357224-28356796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
46, 72
               

               
Conread position:
               
27-400
               

               
Cow position:
               
chr22:12389296-12388913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 85
               

               
Conread position:
               
28-251
               

               
Cow position:
               
chr22:18966968-18967187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 52
               

               
Conread position:
               
28-357
               

               
Cow position:
               
chr22:10609551-10609217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
10, 71
               

               
Conread position:
               
29-479
               

               
Cow position:
               
chr22:23180854-23181292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
31-250
               

               
Cow position:
               
chr22:17198328-17198110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 69
               

               
Conread position:
               
31-334
               

               
Cow position:
               
chr22:12892171-12892482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
31-348
               

               
Cow position:
               
chr22:12929088-12929402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
24, 81
               

               
Conread position:
               
31-476
               

               
Cow position:
               
chr22:21568181-21567748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
31-479
               

               
Cow position:
               
chr22:13866858-13866388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 81
               

               
Conread position:
               
31-479
               

               
Cow position:
               
chr22:34726865-34726416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 133
               

               
Conread position:
               
31-485
               

               
Cow position:
               
chr22:8418654-8418204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
16, 81
               

               
Conread position:
               
31-489
               

               
Cow position:
               
chr22:9127588-9127138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 25
               

               
Conread position:
               
31-490
               

               
Cow position:
               
chr22:8412720-8412257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 79
               

               
Conread position:
               
31-491
               

               
Cow position:
               
chr22:10936659-10937105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
38, 165
               

               
Conread position:
               
31-492
               

               
Cow position:
               
chr22:32480277-32480736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
31-494
               

               
Cow position:
               
chr22:6092473-6092913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
33-489
               

               
Cow position:
               
chr22:6709602-6710041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
19, 84
               

               
Conread position:
               
35-282
               

               
Cow position:
               
chr22:15737416-15737168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
35, 65
               

               
Conread position:
               
35-479
               

               
Cow position:
               
chr22:13669981-13670428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 77
               

               
Conread position:
               
37-419
               

               
Cow position:
               
chr22:14378508-14378882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
50-473
               

               
Cow position:
               
chr22:10324049-10323654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
72, 19
               

               
Conread position:
               
52-449
               

               
Cow position:
               
chr22:27826009-27825608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
52-462
               

               
Cow position:
               
chr22:47556019-47555604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
52-483
               

               
Cow position:
               
chr22:22860745-22861173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
52-485
               

               
Cow position:
               
chr22:45513358-45513784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 132
               

               
Conread position:
               
52-490
               

               
Cow position:
               
chr22:28057876-28058310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 297
               

               
Conread position:
               
55-474
               

               
Cow position:
               
chr22:40120710-40121132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 106
               

               
Conread position:
               
58-418
               

               
Cow position:
               
chr22:15024949-15025301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
58-440
               

               
Cow position:
               
chr22:15068589-15068206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
13, 64
               

               
Conread position:
               
61-479
               

               
Cow position:
               
chr22:3842783-3842368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 135
               

               
Conread position:
               
61-483
               

               
Cow position:
               
chr22:29014041-29013617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 74
               

               
Conread position:
               
61-513
               

               
Cow position:
               
chr22:24509501-24509950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 251
               

               
Conread position:
               
69-355
               

               
Cow position:
               
chr22:27066531-27066258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
69-485
               

               
Cow position:
               
chr22:23831080-23830668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
182, 36
               

               
Conread position:
               
76-304
               

               
Cow position:
               
chr22:12749757-12749985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
176, 5
               

               
Conread position:
               
77-374
               

               
Cow position:
               
chr22:1563108-1563403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
165, 121
               

               
Conread position:
               
77-485
               

               
Cow position:
               
chr22:5290995-5290580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 124
               

               
Conread position:
               
80-479
               

               
Cow position:
               
chr22:17764522-17764117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
36, 112
               

               
Conread position:
               
81-392
               

               
Cow position:
               
chr22:24628514-24628821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
13, 116
               

               
Conread position:
               
87-336
               

               
Cow position:
               
chr22:13222252-13221993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
87-432
               

               
Cow position:
               
chr22:43743210-43743541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
147, 121
               

               
Conread position:
               
87-457
               

               
Cow position:
               
chr22:2627718-2627341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 300
               

               
Conread position:
               
87-477
               

               
Cow position:
               
chr22:32651624-32651251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 22
               

               
Conread position:
               
87-481
               

               
Cow position:
               
chr22:3252824-3253196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
78, 46
               

               
Conread position:
               
87-485
               

               
Cow position:
               
chr22:21295590-21295988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 100
               

               
Conread position:
               
87-490
               

               
Cow position:
               
chr22:26316591-26316210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 121
               

               
Conread position:
               
87-492
               

               
Cow position:
               
chr22:37324672-37324274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 38
               

               
Conread position:
               
88-457
               

               
Cow position:
               
chr22:14690838-14691212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 19
               

               
Conread position:
               
88-477
               

               
Cow position:
               
chr22:4017607-4017219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 98
               

               
Conread position:
               
88-489
               

               
Cow position:
               
chr22:34441495-34441903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
41, 254
               

               
Conread position:
               
89-291
               

               
Cow position:
               
chr22:29185475-29185681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
162, 111
               

               
Conread position:
               
89-457
               

               
Cow position:
               
chr22:11131003-11130635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 256
               

               
Conread position:
               
89-495
               

               
Cow position:
               
chr22:10162102-10161693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
34, 199
               

               
Conread position:
               
92-335
               

               
Cow position:
               
chr22:12829481-12829728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
104, 51
               

               
Conread position:
               
92-354
               

               
Cow position:
               
chr22:6936384-6936127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
159, 19
               

               
Conread position:
               
92-386
               

               
Cow position:
               
chr22:9544260-9544543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
32, 47
               

               
Conread position:
               
92-444
               

               
Cow position:
               
chr22:10633047-10632692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 119
               

               
Conread position:
               
92-479
               

               
Cow position:
               
chr22:10303146-10302752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 248
               

               
Conread position:
               
92-479
               

               
Cow position:
               
chr22:16911667-16912051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
160, 56
               

               
Conread position:
               
92-479
               

               
Cow position:
               
chr22:22155731-22155343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
92-489
               

               
Cow position:
               
chr22:23176310-23176719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 185
               

               
Conread position:
               
92-489
               

               
Cow position:
               
chr22:23855099-23854712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 20
               

               
Conread position:
               
92-494
               

               
Cow position:
               
chr22:27328763-27329156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 110
               

               
Conread position:
               
92-496
               

               
Cow position:
               
chr22:38977973-38977575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
19, 192
               

               
Conread position:
               
93-479
               

               
Cow position:
               
chr22:4988435-4988817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
215, 58
               

               
Conread position:
               
93-479
               

               
Cow position:
               
chr22:23115179-23115563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
182, 168
               

               
Conread position:
               
94-303
               

               
Cow position:
               
chr22:10553557-10553770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
94-414
               

               
Cow position:
               
chr22:21530231-21530544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 161
               

               
Conread position:
               
94-478
               

               
Cow position:
               
chr22:6720952-6721322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
27, 98
               

               
Conread position:
               
94-479
               

               
Cow position:
               
chr22:3950380-3949983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 93
               

               
Conread position:
               
94-479
               

               
Cow position:
               
chr22:4119436-4119826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 15
               

               
Conread position:
               
94-490
               

               
Cow position:
               
chr22:4075758-4076167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 379
               

               
Conread position:
               
94-491
               

               
Cow position:
               
chr22:3250867-3251257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 24
               

               
Conread position:
               
95-306
               

               
Cow position:
               
chr22:26123023-26122809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
160, 15
               

               
Conread position:
               
95-382
               

               
Cow position:
               
chr22:2912465-2912743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
158, 14
               

               
Conread position:
               
95-448
               

               
Cow position:
               
chr22:24583942-24584270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
95-457
               

               
Cow position:
               
chr22:19341322-19340963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
95-463
               

               
Cow position:
               
chr22:25221773-25222144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 43
               

               
Conread position:
               
95-483
               

               
Cow position:
               
chr22:27819127-27818741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
111, 38
               

               
Conread position:
               
97-479
               

               
Cow position:
               
chr22:15950259-15950635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 99
               

               
Conread position:
               
99-494
               

               
Cow position:
               
chr22:30484038-30483641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 238
               

               
Conread position:
               
101-494
               

               
Cow position:
               
chr22:19047694-19048076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
102-345
               

               
Cow position:
               
chr22:43237288-43237534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
102-362
               

               
Cow position:
               
chr22:31154075-31153815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
32, 194
               

               
Conread position:
               
102-468
               

               
Cow position:
               
chr22:22023021-22022639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 205
               

               
Conread position:
               
102-483
               

               
Cow position:
               
chr22:1265804-1266197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
24, 32
               

               
Conread position:
               
102-489
               

               
Cow position:
               
chr22:30049446-30049840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 94
               

               
Conread position:
               
102-490
               

               
Cow position:
               
chr22:17814352-17813959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 88
               

               
Conread position:
               
107-479
               

               
Cow position:
               
chr22:23760641-23761026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
82, 55
               

               
Conread position:
               
109-414
               

               
Cow position:
               
chr22:22908299-22908000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
154, 72
               

               
Conread position:
               
110-294
               

               
Cow position:
               
chr22:45505893-45506081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
96, 170
               

               
Conread position:
               
110-308
               

               
Cow position:
               
chr22:13878289-13878094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
141, 84
               

               
Conread position:
               
110-330
               

               
Cow position:
               
chr22:9597468-9597691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
107, 84
               

               
Conread position:
               
110-366
               

               
Cow position:
               
chr22:25540111-25539846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
70, 74
               

               
Conread position:
               
110-366
               

               
Cow position:
               
chr22:40789677-40789424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
86, 33
               

               
Conread position:
               
110-369
               

               
Cow position:
               
chr22:15668364-15668622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
121, 85
               

               
Conread position:
               
110-378
               

               
Cow position:
               
chr22:45846253-45845989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
159, 20
               

               
Conread position:
               
110-418
               

               
Cow position:
               
chr22:23121890-23122223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
110-426
               

               
Cow position:
               
chr22:41854019-41853691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 168
               

               
Conread position:
               
110-445
               

               
Cow position:
               
chr22:5616413-5616075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 14
               

               
Conread position:
               
110-447
               

               
Cow position:
               
chr22:43119617-43119955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 228
               

               
Conread position:
               
110-477
               

               
Cow position:
               
chr22:10532612-10532240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
219, 156
               

               
Conread position:
               
110-477
               

               
Cow position:
               
chr22:31646603-31646238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
142, 14
               

               
Conread position:
               
110-478
               

               
Cow position:
               
chr22:44180705-44180336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 206
               

               
Conread position:
               
110-479
               

               
Cow position:
               
chr22:1279273-1279644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 91
               

               
Conread position:
               
110-479
               

               
Cow position:
               
chr22:8481754-8481389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 9
               

               
Conread position:
               
110-479
               

               
Cow position:
               
chr22:24610982-24611334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
110-483
               

               
Cow position:
               
chr22:2502938-2502576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 91
               

               
Conread position:
               
110-483
               

               
Cow position:
               
chr22:16044304-16044691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 91
               

               
Conread position:
               
110-485
               

               
Cow position:
               
chr22:34475886-34476264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 284
               

               
Conread position:
               
110-487
               

               
Cow position:
               
chr22:21502856-21502470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
138, 31
               

               
Conread position:
               
110-489
               

               
Cow position:
               
chr22:24175784-24176142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
142, 84
               

               
Conread position:
               
110-489
               

               
Cow position:
               
chr22:27581551-27581181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
112, 48
               

               
Conread position:
               
110-489
               

               
Cow position:
               
chr22:34616418-34616039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
89, 82
               

               
Conread position:
               
110-489
               

               
Cow position:
               
chr22:34712837-34712446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 30
               

               
Conread position:
               
110-490
               

               
Cow position:
               
chr22:14924620-14924991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 233
               

               
Conread position:
               
110-490
               

               
Cow position:
               
chr22:21355029-21355410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
143, 226
               

               
Conread position:
               
110-490
               

               
Cow position:
               
chr22:21746755-21746370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 32
               

               
Conread position:
               
110-490
               

               
Cow position:
               
chr22:28071670-28071285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 56
               

               
Conread position:
               
110-491
               

               
Cow position:
               
chr22:24734205-24734583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
21, 54
               

               
Conread position:
               
110-491
               

               
Cow position:
               
chr22:25742837-25743223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
110-494
               

               
Cow position:
               
chr22:6215444-6215827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 236
               

               
Conread position:
               
111-308
               

               
Cow position:
               
chr22:1983959-1983762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 75
               

               
Conread position:
               
111-476
               

               
Cow position:
               
chr22:8115977-8116337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 215
               

               
Conread position:
               
111-477
               

               
Cow position:
               
chr22:7913572-7913222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
163, 78
               

               
Conread position:
               
111-479
               

               
Cow position:
               
chr22:28351558-28351914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
154, 49
               

               
Conread position:
               
111-485
               

               
Cow position:
               
chr22:877626-877259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 233
               

               
Conread position:
               
111-485
               

               
Cow position:
               
chr22:23857157-23856784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 179
               

               
Conread position:
               
111-485
               

               
Cow position:
               
chr22:26184050-26184424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 105
               

               
Conread position:
               
111-489
               

               
Cow position:
               
chr22:38939830-38940217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 65
               

               
Conread position:
               
112-393
               

               
Cow position:
               
chr22:26969899-26969610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
64, 94
               

               
Conread position:
               
112-420
               

               
Cow position:
               
chr22:2524073-2523763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
71, 90
               

               
Conread position:
               
112-420
               

               
Cow position:
               
chr22:27047303-27047599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
146, 86
               

               
Conread position:
               
112-448
               

               
Cow position:
               
chr22:13300521-13300182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
122, 175
               

               
Conread position:
               
112-457
               

               
Cow position:
               
chr22:23827414-23827074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
161, 22
               

               
Conread position:
               
112-463
               

               
Cow position:
               
chr22:13841249-13840895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 83
               

               
Conread position:
               
112-473
               

               
Cow position:
               
chr22:3965296-3964933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 89
               

               
Conread position:
               
112-479
               

               
Cow position:
               
chr22:5282607-5282249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 99
               

               
Conread position:
               
112-479
               

               
Cow position:
               
chr22:5337488-5337856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
112-479
               

               
Cow position:
               
chr22:14178717-14179089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 88
               

               
Conread position:
               
112-480
               

               
Cow position:
               
chr22:12967959-12968328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 231
               

               
Conread position:
               
112-489
               

               
Cow position:
               
chr22:27224237-27223866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
112, 132
               

               
Conread position:
               
112-489
               

               
Cow position:
               
chr22:41245364-41244978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 53
               

               
Conread position:
               
112-490
               

               
Cow position:
               
chr22:15090852-15090471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 232
               

               
Conread position:
               
112-492
               

               
Cow position:
               
chr22:25477156-25476793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
112-493
               

               
Cow position:
               
chr22:22997586-22997205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
120, 50
               

               
Conread position:
               
113-449
               

               
Cow position:
               
chr22:13769586-13769251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
83, 214
               

               
Conread position:
               
113-460
               

               
Cow position:
               
chr22:5384761-5384416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 48
               

               
Conread position:
               
113-476
               

               
Cow position:
               
chr22:18838364-18838000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
71, 17
               

               
Conread position:
               
113-477
               

               
Cow position:
               
chr22:17294827-17295184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 217
               

               
Conread position:
               
113-477
               

               
Cow position:
               
chr22:25943584-25943225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 163
               

               
Conread position:
               
113-479
               

               
Cow position:
               
chr22:1591133-1590762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 183
               

               
Conread position:
               
113-479
               

               
Cow position:
               
chr22:26659151-26658797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 83
               

               
Conread position:
               
113-484
               

               
Cow position:
               
chr22:28665392-28665007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 226
               

               
Conread position:
               
113-485
               

               
Cow position:
               
chr22:32895327-32894939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
17, 98
               

               
Conread position:
               
113-485
               

               
Cow position:
               
chr22:46567785-46568153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
143, 38
               

               
Conread position:
               
113-489
               

               
Cow position:
               
chr22:34750782-34750409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 52
               

               
Conread position:
               
114-337
               

               
Cow position:
               
chr22:1911773-1911551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
204, 0
               

               
Conread position:
               
114-469
               

               
Cow position:
               
chr22:7852072-7851711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 161
               

               
Conread position:
               
114-489
               

               
Cow position:
               
chr22:29954898-29955267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 86
               

               
Conread position:
               
115-391
               

               
Cow position:
               
chr22:27740997-27740718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
151, 100
               

               
Conread position:
               
115-435
               

               
Cow position:
               
chr22:11458922-11458608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
137, 27
               

               
Conread position:
               
115-460
               

               
Cow position:
               
chr22:23403535-23403880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
42, 90
               

               
Conread position:
               
115-485
               

               
Cow position:
               
chr22:5467245-5467632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 278
               

               
Conread position:
               
115-489
               

               
Cow position:
               
chr22:23833403-23833028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
66, 93
               

               
Conread position:
               
117-414
               

               
Cow position:
               
chr22:27835637-27835345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
132, 12
               

               
Conread position:
               
117-479
               

               
Cow position:
               
chr22:14844665-14844316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
134, 16
               

               
Conread position:
               
120-479
               

               
Cow position:
               
chr22:7838692-7838347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 80
               

               
Conread position:
               
121-407
               

               
Cow position:
               
chr22:16291823-16292107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
104, 124
               

               
Conread position:
               
121-429
               

               
Cow position:
               
chr22:17125683-17125374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 67
               

               
Conread position:
               
121-478
               

               
Cow position:
               
chr22:10631489-10631118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
40, 349
               

               
Conread position:
               
121-479
               

               
Cow position:
               
chr22:7967803-7967440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
100, 75
               

               
Conread position:
               
121-479
               

               
Cow position:
               
chr22:30515359-30514997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 228
               

               
Conread position:
               
121-479
               

               
Cow position:
               
chr22:40720193-40720545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
23, 115
               

               
Conread position:
               
121-489
               

               
Cow position:
               
chr22:4645872-4645509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
122, 15
               

               
Conread position:
               
121-490
               

               
Cow position:
               
chr22:9977910-9977551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
129, 44
               

               
Conread position:
               
121-491
               

               
Cow position:
               
chr22:14638376-14638733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
61, 223
               

               
Conread position:
               
121-493
               

               
Cow position:
               
chr22:30111599-30111225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
123, 17
               

               
Conread position:
               
121-504
               

               
Cow position:
               
chr22:12946081-12946452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
342, 60
               

               
Conread position:
               
122-343
               

               
Cow position:
               
chr22:18293665-18293884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
128, 93
               

               
Conread position:
               
122-489
               

               
Cow position:
               
chr22:19775334-19775693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
74, 29
               

               
Conread position:
               
123-288
               

               
Cow position:
               
chr22:45752911-45752739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
58, 8
               

               
Conread position:
               
123-489
               

               
Cow position:
               
chr22:846002-845635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 193
               

               
Conread position:
               
124-416
               

               
Cow position:
               
chr22:9283500-9283792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
126, 216
               

               
Conread position:
               
124-479
               

               
Cow position:
               
chr22:27171163-27171517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
46, 77
               

               
Conread position:
               
124-494
               

               
Cow position:
               
chr22:2623421-2623787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 87
               

               
Conread position:
               
126-479
               

               
Cow position:
               
chr22:891045-891397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
54, 175
               

               
Conread position:
               
129-479
               

               
Cow position:
               
chr22:7885083-7884733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
67, 75
               

               
Conread position:
               
130-479
               

               
Cow position:
               
chr22:1975701-1975354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 43
               

               
Conread position:
               
138-479
               

               
Cow position:
               
chr22:22160810-22160463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
115, 164
               

               
Conread position:
               
138-479
               

               
Cow position:
               
chr22:42612543-42612200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
113, 165
               

               
Conread position:
               
138-479
               

               
Cow position:
               
chr22:43291818-43292160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 47
               

               
Conread position:
               
138-490
               

               
Cow position:
               
chr22:4651261-4650912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
140-490
               

               
Cow position:
               
chr22:34398374-34398724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 61
               

               
Conread position:
               
142-341
               

               
Cow position:
               
chr22:5837348-5837145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
113, 15
               

               
Conread position:
               
143-344
               

               
Cow position:
               
chr22:2123371-2123169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
143-362
               

               
Cow position:
               
chr22:21325654-21325875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
143-396
               

               
Cow position:
               
chr22:17132331-17132585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
95, 103
               

               
Conread position:
               
143-414
               

               
Cow position:
               
chr22:16053386-16053119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
143-439
               

               
Cow position:
               
chr22:13849374-13849668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
119, 53
               

               
Conread position:
               
143-457
               

               
Cow position:
               
chr22:36560580-36560897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
111, 28
               

               
Conread position:
               
143-476
               

               
Cow position:
               
chr22:30964207-30963876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
143-479
               

               
Cow position:
               
chr22:31196421-31196754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
89, 103
               

               
Conread position:
               
143-483
               

               
Cow position:
               
chr22:26134145-26134497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 131
               

               
Conread position:
               
144-457
               

               
Cow position:
               
chr22:4108652-4108975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
108, 165
               

               
Conread position:
               
145-479
               

               
Cow position:
               
chr22:31592779-31593119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 62
               

               
Conread position:
               
145-479
               

               
Cow position:
               
chr22:35753232-35753564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
51, 75
               

               
Conread position:
               
147-386
               

               
Cow position:
               
chr22:8708967-8709195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
233, 58
               

               
Conread position:
               
147-414
               

               
Cow position:
               
chr22:12800746-12800470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
70, 65
               

               
Conread position:
               
147-470
               

               
Cow position:
               
chr22:47741495-47741168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
96, 51
               

               
Conread position:
               
147-488
               

               
Cow position:
               
chr22:15760437-15760089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
105, 61
               

               
Conread position:
               
149-489
               

               
Cow position:
               
chr22:19787604-19787947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
103, 197
               

               
Conread position:
               
162-477
               

               
Cow position:
               
chr22:4990107-4990427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
34, 39
               

               
Conread position:
               
162-479
               

               
Cow position:
               
chr22:14882056-14882369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
92, 30
               

               
Conread position:
               
162-488
               

               
Cow position:
               
chr22:912158-911835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
78, 132
               

               
Conread position:
               
162-489
               

               
Cow position:
               
chr22:26097560-26097881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
162-494
               

               
Cow position:
               
chr22:17992971-17993303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
81, 120
               

               
Conread position:
               
164-479
               

               
Cow position:
               
chr22:33094627-33094303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
6, 186
               

               
Conread position:
               
165-456
               

               
Cow position:
               
chr22:15919583-15919870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 82
               

               
Conread position:
               
165-491
               

               
Cow position:
               
chr22:14376355-14376663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
31, 36
               

               
Conread position:
               
166-339
               

               
Cow position:
               
chr22:14835170-14835340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
166-479
               

               
Cow position:
               
chr22:1484919-1484604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 157
               

               
Conread position:
               
166-485
               

               
Cow position:
               
chr22:4043989-4043669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
66, 131
               

               
Conread position:
               
169-331
               

               
Cow position:
               
chr22:4135669-4135505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
86, 110
               

               
Conread position:
               
169-413
               

               
Cow position:
               
chr22:10677938-10678177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
86, 31
               

               
Conread position:
               
170-457
               

               
Cow position:
               
chr22:1640248-1640545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
171-457
               

               
Cow position:
               
chr22:25629714-25630007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
171-461
               

               
Cow position:
               
chr22:19738522-19738818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 24
               

               
Conread position:
               
172-358
               

               
Cow position:
               
chr22:17193442-17193250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
69, 74
               

               
Conread position:
               
173-479
               

               
Cow position:
               
chr22:38930458-38930772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 27
               

               
Conread position:
               
175-480
               

               
Cow position:
               
chr22:42684960-42684640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 204
               

               
Conread position:
               
178-480
               

               
Cow position:
               
chr22:26151068-26151377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
75, 152
               

               
Conread position:
               
181-470
               

               
Cow position:
               
chr22:30471652-30471942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 19
               

               
Conread position:
               
182-448
               

               
Cow position:
               
chr22:33414979-33415249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
25, 220
               

               
Conread position:
               
182-494
               

               
Cow position:
               
chr22:3960243-3960565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
59, 308
               

               
Conread position:
               
185-457
               

               
Cow position:
               
chr22:2010839-2010563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
185-479
               

               
Cow position:
               
chr22:6202956-6202655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
23, 140
               

               
Conread position:
               
186-474
               

               
Cow position:
               
chr22:15959731-15960024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
66, 59
               

               
Conread position:
               
188-384
               

               
Cow position:
               
chr22:3241665-3241859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
62, 154
               

               
Conread position:
               
189-471
               

               
Cow position:
               
chr22:41270968-41271241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
75, 148
               

               
Conread position:
               
191-471
               

               
Cow position:
               
chr22:294902-295187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
78, 147
               

               
Conread position:
               
197-378
               

               
Cow position:
               
chr22:10292993-10292805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
5, 12
               

               
Conread position:
               
199-488
               

               
Cow position:
               
chr22:27292112-27291838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
200-453
               

               
Cow position:
               
chr22:10585681-10585933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
52, 93
               

               
Conread position:
               
200-490
               

               
Cow position:
               
chr22:6122882-6123164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
50, 97
               

               
Conread position:
               
202-457
               

               
Cow position:
               
chr22:22146253-22145990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
48, 141
               

               
Conread position:
               
202-479
               

               
Cow position:
               
chr22:23865490-23865204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 267
               

               
Conread position:
               
202-486
               

               
Cow position:
               
chr22:36569531-36569807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
53, 135
               

               
Conread position:
               
202-490
               

               
Cow position:
               
chr22:41044891-41045183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
51, 9
               

               
Conread position:
               
203-432
               

               
Cow position:
               
chr22:4974404-4974631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
51, 86
               

               
Conread position:
               
203-489
               

               
Cow position:
               
chr22:11500798-11500514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
49, 137
               

               
Conread position:
               
204-374
               

               
Cow position:
               
chr22:15020380-15020555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
204-475
               

               
Cow position:
               
chr22:8063304-8063579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
7, 12
               

               
Conread position:
               
204-485
               

               
Cow position:
               
chr22:21408230-21407944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
206-490
               

               
Cow position:
               
chr22:16057722-16057432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
5, 178
               

               
Conread position:
               
207-490
               

               
Cow position:
               
chr22:30712775-30712482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
50, 271
               

               
Conread position:
               
208-460
               

               
Cow position:
               
chr22:12777577-12777822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
38, 90
               

               
Conread position:
               
209-387
               

               
Cow position:
               
chr22:11497214-11497027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
210-426
               

               
Cow position:
               
chr22:1602202-1601978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
47, 66
               

               
Conread position:
               
211-413
               

               
Cow position:
               
chr22:11071553-11071357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 129
               

               
Conread position:
               
211-480
               

               
Cow position:
               
chr22:16309773-16309500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
64, 44
               

               
Conread position:
               
211-489
               

               
Cow position:
               
chr22:28179869-28179575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
43, 177
               

               
Conread position:
               
212-368
               

               
Cow position:
               
chr22:16917201-16917352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
212-477
               

               
Cow position:
               
chr22:28731687-28731430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
35, 94
               

               
Conread position:
               
212-478
               

               
Cow position:
               
chr22:39494187-39494461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
27, 76
               

               
Conread position:
               
216-387
               

               
Cow position:
               
chr22:12599093-12598921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
36, 119
               

               
Conread position:
               
216-420
               

               
Cow position:
               
chr22:1727880-1727680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
182, 123
               

               
Conread position:
               
216-426
               

               
Cow position:
               
chr22:30710409-30710187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 125
               

               
Conread position:
               
216-477
               

               
Cow position:
               
chr22:6360480-6360744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
41, 130
               

               
Conread position:
               
216-479
               

               
Cow position:
               
chr22:5042320-5042061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
221, 116
               

               
Conread position:
               
216-489
               

               
Cow position:
               
chr22:25342022-25341752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
218-479
               

               
Cow position:
               
chr22:4632009-4631748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 177
               

               
Conread position:
               
219-461
               

               
Cow position:
               
chr22:32952480-32952238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
37, 143
               

               
Conread position:
               
220-433
               

               
Cow position:
               
chr22:10363070-10362842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
221-457
               

               
Cow position:
               
chr22:20687303-20687057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
222-441
               

               
Cow position:
               
chr22:10403501-10403716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
33, 75
               

               
Conread position:
               
223-477
               

               
Cow position:
               
chr22:1821872-1822130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
38, 122
               

               
Conread position:
               
226-479
               

               
Cow position:
               
chr22:26107055-26106800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 116
               

               
Conread position:
               
226-485
               

               
Cow position:
               
chr22:25645530-25645794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 116
               

               
Conread position:
               
227-429
               

               
Cow position:
               
chr22:18218894-18219102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
30, 151
               

               
Conread position:
               
228-479
               

               
Cow position:
               
chr22:39472382-39472634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
12, 18
               

               
Conread position:
               
229-475
               

               
Cow position:
               
chr22:9734846-9734601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
32, 105
               

               
Conread position:
               
246-395
               

               
Cow position:
               
chr22:26123356-26123501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 93
               

               
Conread position:
               
246-479
               

               
Cow position:
               
chr22:30473018-30472788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
246-485
               

               
Cow position:
               
chr22:45355351-45355122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
84, 62
               

               
Conread position:
               
247-439
               

               
Cow position:
               
chr22:3945145-3944956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
53, 8
               

               
Conread position:
               
247-460
               

               
Cow position:
               
chr22:2141780-2141575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
247-485
               

               
Cow position:
               
chr22:30117492-30117254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 50
               

               
Conread position:
               
251-494
               

               
Cow position:
               
chr22:26490428-26490188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
253-451
               

               
Cow position:
               
chr22:22148043-22147840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 40
               

               
Conread position:
               
254-457
               

               
Cow position:
               
chr22:30119188-30118983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
95, 20
               

               
Conread position:
               
254-457
               

               
Cow position:
               
chr22:30136792-30136587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 20
               

               
Conread position:
               
255-460
               

               
Cow position:
               
chr22:4026569-4026369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
255-480
               

               
Cow position:
               
chr22:14601467-14601255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
255-489
               

               
Cow position:
               
chr22:14602434-14602663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
31, 42
               

               
Conread position:
               
255-492
               

               
Cow position:
               
chr22:35474318-35474081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
130, 55
               

               
Conread position:
               
256-485
               

               
Cow position:
               
chr22:11837245-11837465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
137, 83
               

               
Conread position:
               
258-458
               

               
Cow position:
               
chr22:30114031-30113829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
121, 51
               

               
Conread position:
               
258-479
               

               
Cow position:
               
chr22:22054378-22054159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
121, 81
               

               
Conread position:
               
258-480
               

               
Cow position:
               
chr22:39303042-39303265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
55, 81
               

               
Conread position:
               
258-494
               

               
Cow position:
               
chr22:33949039-33949276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
127, 73
               

               
Conread position:
               
260-408
               

               
Cow position:
               
chr22:3541764-3541907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
264-414
               

               
Cow position:
               
chr22:7252688-7252841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
89, 71
               

               
Conread position:
               
264-473
               

               
Cow position:
               
chr22:19376663-19376459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
11, 76
               

               
Conread position:
               
265-479
               

               
Cow position:
               
chr22:45271535-45271321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
128, 74
               

               
Conread position:
               
268-432
               

               
Cow position:
               
chr22:27512214-27512374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
268-440
               

               
Cow position:
               
chr22:17339814-17339982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
268-448
               

               
Cow position:
               
chr22:37817707-37817530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 43
               

               
Conread position:
               
268-453
               

               
Cow position:
               
chr22:12974439-12974625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
117, 66
               

               
Conread position:
               
268-484
               

               
Cow position:
               
chr22:44386456-44386661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
273-461
               

               
Cow position:
               
chr22:38549737-38549553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
99, 66
               

               
Conread position:
               
273-477
               

               
Cow position:
               
chr22:8767288-8767086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
98, 144
               

               
Conread position:
               
273-479
               

               
Cow position:
               
chr22:6204349-6204552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
273-479
               

               
Cow position:
               
chr22:11200981-11200785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
273-479
               

               
Cow position:
               
chr22:11987269-11987475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
96, 66
               

               
Conread position:
               
273-479
               

               
Cow position:
               
chr22:36761573-36761375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
273-490
               

               
Cow position:
               
chr22:8302907-8303111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
273-491
               

               
Cow position:
               
chr22:766333-766552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
182, 66
               

               
Conread position:
               
274-479
               

               
Cow position:
               
chr22:16235705-16235908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
97, 65
               

               
Conread position:
               
274-494
               

               
Cow position:
               
chr22:3282989-3283205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
62, 41
               

               
Conread position:
               
275-490
               

               
Cow position:
               
chr22:27701156-27700945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
278-489
               

               
Cow position:
               
chr22:1710513-1710308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
62, 93
               

               
Conread position:
               
281-485
               

               
Cow position:
               
chr22:34665987-34665788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 58
               

               
Conread position:
               
298-479
               

               
Cow position:
               
chr22:28937978-28938164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
82, 117
               

               
Conread position:
               
299-456
               

               
Cow position:
               
chr22:41417214-41417373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
60, 40
               

               
Conread position:
               
305-489
               

               
Cow position:
               
chr22:13720610-13720793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
115, 34
               

               
Conread position:
               
305-492
               

               
Cow position:
               
chr22:36208853-36208669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
76, 38
               

               
Conread position:
               
312-490
               

               
Cow position:
               
chr22:12381808-12381632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
167, 0
               
Show alignments to all cow chromosomes.