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Cow genome map

           
Conread name:
           
Mus1-POSM0100014_A02F
        

               
Conread position:
               
3-490
               

               
Cow position:
               
chr9:22434120-22433648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 56
               

               
Conread position:
               
7-479
               

               
Cow position:
               
chr9:13670454-13670921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
10-223
               

               
Cow position:
               
chr9:34362551-34362763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
46, 86
               

               
Conread position:
               
10-364
               

               
Cow position:
               
chr9:5456361-5456005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
23, 80
               

               
Conread position:
               
10-427
               

               
Cow position:
               
chr9:35028352-35027942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 86
               

               
Conread position:
               
10-456
               

               
Cow position:
               
chr9:32676492-32676947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 125
               

               
Conread position:
               
10-479
               

               
Cow position:
               
chr9:4629921-4630386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
10-483
               

               
Cow position:
               
chr9:36491089-36490607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
53, 104
               

               
Conread position:
               
11-286
               

               
Cow position:
               
chr9:5342428-5342158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
11-308
               

               
Cow position:
               
chr9:38941621-38941316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
11-479
               

               
Cow position:
               
chr9:52406986-52407454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 100
               

               
Conread position:
               
11-490
               

               
Cow position:
               
chr9:30137940-30138420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 19
               

               
Conread position:
               
12-340
               

               
Cow position:
               
chr9:34283777-34284095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
229, 28
               

               
Conread position:
               
12-351
               

               
Cow position:
               
chr9:33114161-33114501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
60, 26
               

               
Conread position:
               
12-461
               

               
Cow position:
               
chr9:9596133-9595688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 84
               

               
Conread position:
               
12-483
               

               
Cow position:
               
chr9:31640510-31640030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
40, 95
               

               
Conread position:
               
13-337
               

               
Cow position:
               
chr9:32670128-32669803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
235, 79
               

               
Conread position:
               
13-364
               

               
Cow position:
               
chr9:5263322-5263669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 89
               

               
Conread position:
               
13-364
               

               
Cow position:
               
chr9:31215897-31216257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
39, 82
               

               
Conread position:
               
13-366
               

               
Cow position:
               
chr9:39011649-39011306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
57, 94
               

               
Conread position:
               
13-374
               

               
Cow position:
               
chr9:47446190-47445848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
13-396
               

               
Cow position:
               
chr9:4341338-4340969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chr9:52130830-52131263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 83
               

               
Conread position:
               
13-453
               

               
Cow position:
               
chr9:58979223-58979659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 89
               

               
Conread position:
               
13-460
               

               
Cow position:
               
chr9:34286616-34287059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 97
               

               
Conread position:
               
13-461
               

               
Cow position:
               
chr9:8723612-8724063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
20, 80
               

               
Conread position:
               
13-461
               

               
Cow position:
               
chr9:23541582-23541152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
41, 119
               

               
Conread position:
               
13-477
               

               
Cow position:
               
chr9:9724061-9723601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 99
               

               
Conread position:
               
13-477
               

               
Cow position:
               
chr9:34697484-34697014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 85
               

               
Conread position:
               
13-479
               

               
Cow position:
               
chr9:44709651-44710105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 30
               

               
Conread position:
               
13-479
               

               
Cow position:
               
chr9:50977438-50976962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 100
               

               
Conread position:
               
13-479
               

               
Cow position:
               
chr9:54681339-54681785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 43
               

               
Conread position:
               
13-486
               

               
Cow position:
               
chr9:28747700-28747231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 83
               

               
Conread position:
               
14-230
               

               
Cow position:
               
chr9:35306530-35306312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 65
               

               
Conread position:
               
14-374
               

               
Cow position:
               
chr9:40215066-40215422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
41, 81
               

               
Conread position:
               
14-386
               

               
Cow position:
               
chr9:1370754-1371123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
56, 70
               

               
Conread position:
               
14-410
               

               
Cow position:
               
chr9:11123661-11123277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
14-476
               

               
Cow position:
               
chr9:18380686-18381141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
14-479
               

               
Cow position:
               
chr9:5500683-5501133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 42
               

               
Conread position:
               
14-479
               

               
Cow position:
               
chr9:13993978-13994472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
42, 129
               

               
Conread position:
               
15-246
               

               
Cow position:
               
chr9:21292588-21292357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
18, 84
               

               
Conread position:
               
15-252
               

               
Cow position:
               
chr9:5110676-5110914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
15-291
               

               
Cow position:
               
chr9:35832794-35832517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 78
               

               
Conread position:
               
15-311
               

               
Cow position:
               
chr9:37198952-37199241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
15-329
               

               
Cow position:
               
chr9:40005297-40005612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
55, 98
               

               
Conread position:
               
15-341
               

               
Cow position:
               
chr9:38624804-38624481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
55, 78
               

               
Conread position:
               
15-364
               

               
Cow position:
               
chr9:51721067-51720733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
235, 38
               

               
Conread position:
               
15-420
               

               
Cow position:
               
chr9:27279126-27279543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 97
               

               
Conread position:
               
15-489
               

               
Cow position:
               
chr9:20579768-20579332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
15-491
               

               
Cow position:
               
chr9:13169845-13169375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
41, 90
               

               
Conread position:
               
16-335
               

               
Cow position:
               
chr9:60080714-60081048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 129
               

               
Conread position:
               
16-361
               

               
Cow position:
               
chr9:47591163-47590814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
40, 108
               

               
Conread position:
               
16-463
               

               
Cow position:
               
chr9:5392894-5393319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 78
               

               
Conread position:
               
16-463
               

               
Cow position:
               
chr9:51620265-51620704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 76
               

               
Conread position:
               
16-477
               

               
Cow position:
               
chr9:55795579-55796036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
36, 94
               

               
Conread position:
               
16-479
               

               
Cow position:
               
chr9:31625952-31626433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 80
               

               
Conread position:
               
16-494
               

               
Cow position:
               
chr9:647599-648076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
17-223
               

               
Cow position:
               
chr9:1884319-1884103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
17-307
               

               
Cow position:
               
chr9:50310936-50310659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
17-313
               

               
Cow position:
               
chr9:9311681-9311980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
58, 43
               

               
Conread position:
               
17-344
               

               
Cow position:
               
chr9:40507771-40507462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
34, 24
               

               
Conread position:
               
17-366
               

               
Cow position:
               
chr9:26477034-26477387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 92
               

               
Conread position:
               
17-374
               

               
Cow position:
               
chr9:12280795-12281148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
17-377
               

               
Cow position:
               
chr9:8901407-8901042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
32, 72
               

               
Conread position:
               
17-425
               

               
Cow position:
               
chr9:6338615-6339032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
52, 105
               

               
Conread position:
               
17-457
               

               
Cow position:
               
chr9:53258234-53257798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
17-460
               

               
Cow position:
               
chr9:33597795-33598246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 246
               

               
Conread position:
               
17-476
               

               
Cow position:
               
chr9:5757157-5756722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
17-485
               

               
Cow position:
               
chr9:15806104-15805631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
17-489
               

               
Cow position:
               
chr9:52505484-52505009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 107
               

               
Conread position:
               
17-491
               

               
Cow position:
               
chr9:52689792-52689326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 117
               

               
Conread position:
               
17-492
               

               
Cow position:
               
chr9:8998175-8998652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 39
               

               
Conread position:
               
18-342
               

               
Cow position:
               
chr9:26102560-26102874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
18-479
               

               
Cow position:
               
chr9:19538923-19539381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
18-489
               

               
Cow position:
               
chr9:9443779-9443298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 45
               

               
Conread position:
               
19-249
               

               
Cow position:
               
chr9:25375909-25375683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 35
               

               
Conread position:
               
19-335
               

               
Cow position:
               
chr9:1878174-1877863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
56, 35
               

               
Conread position:
               
19-426
               

               
Cow position:
               
chr9:62724366-62724777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
33, 55
               

               
Conread position:
               
20-479
               

               
Cow position:
               
chr9:42497653-42498113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 89
               

               
Conread position:
               
20-489
               

               
Cow position:
               
chr9:49764470-49764950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 93
               

               
Conread position:
               
20-491
               

               
Cow position:
               
chr9:28726904-28726428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 76
               

               
Conread position:
               
20-494
               

               
Cow position:
               
chr9:35166994-35167465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 265
               

               
Conread position:
               
21-263
               

               
Cow position:
               
chr9:47214720-47214478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
49, 25
               

               
Conread position:
               
21-365
               

               
Cow position:
               
chr9:50202380-50202739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
33, 275
               

               
Conread position:
               
21-477
               

               
Cow position:
               
chr9:41282838-41283310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 95
               

               
Conread position:
               
22-248
               

               
Cow position:
               
chr9:12786649-12786421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
33, 91
               

               
Conread position:
               
22-476
               

               
Cow position:
               
chr9:1751156-1751616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
22-494
               

               
Cow position:
               
chr9:32307407-32306941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 91
               

               
Conread position:
               
23-240
               

               
Cow position:
               
chr9:12337728-12337946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 71
               

               
Conread position:
               
24-479
               

               
Cow position:
               
chr9:30402595-30402136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 14
               

               
Conread position:
               
24-479
               

               
Cow position:
               
chr9:61847286-61846866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
27-460
               

               
Cow position:
               
chr9:55117914-55118343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
29, 79
               

               
Conread position:
               
28-367
               

               
Cow position:
               
chr9:60395216-60394879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
24, 82
               

               
Conread position:
               
31-378
               

               
Cow position:
               
chr9:27345753-27345427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
21, 104
               

               
Conread position:
               
31-388
               

               
Cow position:
               
chr9:25583667-25584013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
31-391
               

               
Cow position:
               
chr9:12226149-12225787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
21, 121
               

               
Conread position:
               
31-485
               

               
Cow position:
               
chr9:56032481-56032039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 79
               

               
Conread position:
               
33-489
               

               
Cow position:
               
chr9:5835988-5836458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 22
               

               
Conread position:
               
33-494
               

               
Cow position:
               
chr9:16300736-16300275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 312
               

               
Conread position:
               
34-392
               

               
Cow position:
               
chr9:9815252-9815614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
36, 76
               

               
Conread position:
               
35-476
               

               
Cow position:
               
chr9:51566658-51566207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 74
               

               
Conread position:
               
36-341
               

               
Cow position:
               
chr9:63153973-63153671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
36-460
               

               
Cow position:
               
chr9:26057588-26057183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
37-478
               

               
Cow position:
               
chr9:29185298-29184851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
47-479
               

               
Cow position:
               
chr9:44467488-44467065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
48-490
               

               
Cow position:
               
chr9:20416658-20416217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 152
               

               
Conread position:
               
50-342
               

               
Cow position:
               
chr9:41394792-41394505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
20, 60
               

               
Conread position:
               
52-411
               

               
Cow position:
               
chr9:16811795-16811443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
317, 23
               

               
Conread position:
               
52-445
               

               
Cow position:
               
chr9:29091630-29092055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
18, 57
               

               
Conread position:
               
52-494
               

               
Cow position:
               
chr9:15215830-15215382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
55-252
               

               
Cow position:
               
chr9:24652262-24652460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
16, 146
               

               
Conread position:
               
58-413
               

               
Cow position:
               
chr9:17677247-17676903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 64
               

               
Conread position:
               
58-426
               

               
Cow position:
               
chr9:43623131-43623491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
58-429
               

               
Cow position:
               
chr9:52619512-52619886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
12, 61
               

               
Conread position:
               
69-439
               

               
Cow position:
               
chr9:1729799-1729432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 40
               

               
Conread position:
               
70-475
               

               
Cow position:
               
chr9:823838-824235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
173, 22
               

               
Conread position:
               
70-476
               

               
Cow position:
               
chr9:10010691-10011081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
393, 22
               

               
Conread position:
               
70-493
               

               
Cow position:
               
chr9:51204600-51205019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
41, 184
               

               
Conread position:
               
77-489
               

               
Cow position:
               
chr9:29824910-29825323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
37, 111
               

               
Conread position:
               
79-390
               

               
Cow position:
               
chr9:47500327-47500012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
9, 49
               

               
Conread position:
               
80-306
               

               
Cow position:
               
chr9:23788323-23788551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
169, 130
               

               
Conread position:
               
80-452
               

               
Cow position:
               
chr9:3782256-3782620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
303, 40
               

               
Conread position:
               
82-395
               

               
Cow position:
               
chr9:37677779-37678087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 111
               

               
Conread position:
               
87-287
               

               
Cow position:
               
chr9:9502980-9503174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
87-310
               

               
Cow position:
               
chr9:38645453-38645225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
168, 84
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr9:62668141-62668447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
109, 48
               

               
Conread position:
               
87-426
               

               
Cow position:
               
chr9:4268091-4267749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
163, 188
               

               
Conread position:
               
87-448
               

               
Cow position:
               
chr9:33681550-33681937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
107, 279
               

               
Conread position:
               
87-456
               

               
Cow position:
               
chr9:17411300-17410924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 22
               

               
Conread position:
               
87-476
               

               
Cow position:
               
chr9:6934180-6933791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 22
               

               
Conread position:
               
87-477
               

               
Cow position:
               
chr9:9461763-9461373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 56
               

               
Conread position:
               
87-479
               

               
Cow position:
               
chr9:59386880-59386497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 197
               

               
Conread position:
               
87-487
               

               
Cow position:
               
chr9:39681229-39681650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 55
               

               
Conread position:
               
88-476
               

               
Cow position:
               
chr9:37069666-37069288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
88-478
               

               
Cow position:
               
chr9:26085950-26086350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 113
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr9:62442182-62442578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
162, 88
               

               
Conread position:
               
89-386
               

               
Cow position:
               
chr9:12910508-12910208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
114, 107
               

               
Conread position:
               
89-386
               

               
Cow position:
               
chr9:19555271-19555565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
17, 24
               

               
Conread position:
               
89-420
               

               
Cow position:
               
chr9:30477880-30477559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
107, 21
               

               
Conread position:
               
89-460
               

               
Cow position:
               
chr9:20322199-20321851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
211, 23
               

               
Conread position:
               
89-460
               

               
Cow position:
               
chr9:64637443-64637810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 109
               

               
Conread position:
               
89-489
               

               
Cow position:
               
chr9:54528406-54528809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 107
               

               
Conread position:
               
89-491
               

               
Cow position:
               
chr9:9551982-9552383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
90-316
               

               
Cow position:
               
chr9:3353256-3353474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
199, 66
               

               
Conread position:
               
91-490
               

               
Cow position:
               
chr9:55075232-55074842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 19
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr9:5469767-5469956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
92-328
               

               
Cow position:
               
chr9:44396558-44396795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
159, 128
               

               
Conread position:
               
92-412
               

               
Cow position:
               
chr9:1938020-1938343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
55, 212
               

               
Conread position:
               
92-446
               

               
Cow position:
               
chr9:61544557-61544900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
143, 65
               

               
Conread position:
               
92-457
               

               
Cow position:
               
chr9:22637998-22638362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
133, 154
               

               
Conread position:
               
92-478
               

               
Cow position:
               
chr9:50081144-50080763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
92-479
               

               
Cow position:
               
chr9:18342629-18343006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
157, 187
               

               
Conread position:
               
92-483
               

               
Cow position:
               
chr9:53413344-53412961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
13, 157
               

               
Conread position:
               
92-485
               

               
Cow position:
               
chr9:31346848-31347243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 17
               

               
Conread position:
               
92-494
               

               
Cow position:
               
chr9:29840802-29841186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 14
               

               
Conread position:
               
92-494
               

               
Cow position:
               
chr9:33940502-33940906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 38
               

               
Conread position:
               
93-288
               

               
Cow position:
               
chr9:43342228-43342425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
103, 107
               

               
Conread position:
               
93-490
               

               
Cow position:
               
chr9:48107211-48106824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
94-414
               

               
Cow position:
               
chr9:42061996-42062335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
25, 107
               

               
Conread position:
               
94-430
               

               
Cow position:
               
chr9:15225398-15225055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 281
               

               
Conread position:
               
94-440
               

               
Cow position:
               
chr9:8562720-8563086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
115, 256
               

               
Conread position:
               
94-440
               

               
Cow position:
               
chr9:50139183-50139526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 206
               

               
Conread position:
               
94-448
               

               
Cow position:
               
chr9:31814488-31814125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
96, 196
               

               
Conread position:
               
94-472
               

               
Cow position:
               
chr9:8288516-8288895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 80
               

               
Conread position:
               
94-477
               

               
Cow position:
               
chr9:10667126-10666743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
24, 77
               

               
Conread position:
               
94-491
               

               
Cow position:
               
chr9:1520839-1520431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 15
               

               
Conread position:
               
94-491
               

               
Cow position:
               
chr9:17741044-17740647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 80
               

               
Conread position:
               
95-252
               

               
Cow position:
               
chr9:58369097-58368941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
95-330
               

               
Cow position:
               
chr9:34410497-34410258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
108, 101
               

               
Conread position:
               
95-395
               

               
Cow position:
               
chr9:3738325-3738022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
165, 246
               

               
Conread position:
               
95-433
               

               
Cow position:
               
chr9:11319735-11319394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 186
               

               
Conread position:
               
95-437
               

               
Cow position:
               
chr9:3186025-3186385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 176
               

               
Conread position:
               
95-494
               

               
Cow position:
               
chr9:31079180-31078787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 29
               

               
Conread position:
               
97-348
               

               
Cow position:
               
chr9:42478581-42478313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
97-463
               

               
Cow position:
               
chr9:14796869-14796510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
134, 158
               

               
Conread position:
               
98-462
               

               
Cow position:
               
chr9:63194509-63194875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
153, 201
               

               
Conread position:
               
98-494
               

               
Cow position:
               
chr9:40542040-40542412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
102-341
               

               
Cow position:
               
chr9:4263184-4262944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
102-369
               

               
Cow position:
               
chr9:17518583-17518315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
151, 174
               

               
Conread position:
               
102-374
               

               
Cow position:
               
chr9:11168637-11168909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
124, 17
               

               
Conread position:
               
102-432
               

               
Cow position:
               
chr9:45141692-45141368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 18
               

               
Conread position:
               
102-449
               

               
Cow position:
               
chr9:33119982-33119628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 239
               

               
Conread position:
               
102-462
               

               
Cow position:
               
chr9:34902196-34901848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 95
               

               
Conread position:
               
102-477
               

               
Cow position:
               
chr9:21888076-21888451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 106
               

               
Conread position:
               
102-489
               

               
Cow position:
               
chr9:22318258-22318632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 36
               

               
Conread position:
               
102-489
               

               
Cow position:
               
chr9:26279263-26278883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 138
               

               
Conread position:
               
106-336
               

               
Cow position:
               
chr9:10819918-10819689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
157, 94
               

               
Conread position:
               
106-479
               

               
Cow position:
               
chr9:5763720-5763346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 30
               

               
Conread position:
               
107-477
               

               
Cow position:
               
chr9:29684056-29684427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
132, 24
               

               
Conread position:
               
107-479
               

               
Cow position:
               
chr9:19902993-19903336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
147, 182
               

               
Conread position:
               
107-479
               

               
Cow position:
               
chr9:34468667-34468309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 23
               

               
Conread position:
               
109-329
               

               
Cow position:
               
chr9:31359517-31359737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
90, 107
               

               
Conread position:
               
109-336
               

               
Cow position:
               
chr9:32348901-32348678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
134, 156
               

               
Conread position:
               
109-479
               

               
Cow position:
               
chr9:20847847-20848220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
13, 52
               

               
Conread position:
               
109-494
               

               
Cow position:
               
chr9:20901208-20900832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
102, 43
               

               
Conread position:
               
110-270
               

               
Cow position:
               
chr9:7806047-7805885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
110-284
               

               
Cow position:
               
chr9:3343663-3343840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
110-303
               

               
Cow position:
               
chr9:28378882-28379080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
142, 95
               

               
Conread position:
               
110-311
               

               
Cow position:
               
chr9:52598807-52598605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
86, 90
               

               
Conread position:
               
110-315
               

               
Cow position:
               
chr9:62459281-62459491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
142, 66
               

               
Conread position:
               
110-342
               

               
Cow position:
               
chr9:52513534-52513303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
86, 90
               

               
Conread position:
               
110-343
               

               
Cow position:
               
chr9:52839965-52839736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
110-366
               

               
Cow position:
               
chr9:6852153-6851897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
110-384
               

               
Cow position:
               
chr9:9654393-9654123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
137, 81
               

               
Conread position:
               
110-394
               

               
Cow position:
               
chr9:35105876-35105586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
86, 90
               

               
Conread position:
               
110-396
               

               
Cow position:
               
chr9:61302914-61303204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
123, 228
               

               
Conread position:
               
110-407
               

               
Cow position:
               
chr9:30652796-30652496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
10, 69
               

               
Conread position:
               
110-414
               

               
Cow position:
               
chr9:28354431-28354737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 186
               

               
Conread position:
               
110-424
               

               
Cow position:
               
chr9:58972580-58972262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
147, 63
               

               
Conread position:
               
110-445
               

               
Cow position:
               
chr9:18217185-18216850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 196
               

               
Conread position:
               
110-464
               

               
Cow position:
               
chr9:64050647-64050286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 131
               

               
Conread position:
               
110-470
               

               
Cow position:
               
chr9:60110164-60110508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
20, 29
               

               
Conread position:
               
110-471
               

               
Cow position:
               
chr9:64559968-64559610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 99
               

               
Conread position:
               
110-475
               

               
Cow position:
               
chr9:55287975-55287611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 84
               

               
Conread position:
               
110-477
               

               
Cow position:
               
chr9:5219258-5218898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
93, 193
               

               
Conread position:
               
110-479
               

               
Cow position:
               
chr9:5245767-5246132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 198
               

               
Conread position:
               
110-479
               

               
Cow position:
               
chr9:7634185-7634552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 235
               

               
Conread position:
               
110-479
               

               
Cow position:
               
chr9:43870889-43871256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 230
               

               
Conread position:
               
110-484
               

               
Cow position:
               
chr9:22152171-22151799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 101
               

               
Conread position:
               
110-485
               

               
Cow position:
               
chr9:29006472-29006850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 14
               

               
Conread position:
               
110-490
               

               
Cow position:
               
chr9:8337941-8338325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 197
               

               
Conread position:
               
110-490
               

               
Cow position:
               
chr9:19713994-19714365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 90
               

               
Conread position:
               
110-491
               

               
Cow position:
               
chr9:57897196-57896829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
60, 45
               

               
Conread position:
               
110-493
               

               
Cow position:
               
chr9:17872196-17871806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 261
               

               
Conread position:
               
110-497
               

               
Cow position:
               
chr9:55084387-55083995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 59
               

               
Conread position:
               
111-376
               

               
Cow position:
               
chr9:3774080-3774348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
143, 66
               

               
Conread position:
               
111-414
               

               
Cow position:
               
chr9:1972863-1973161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 83
               

               
Conread position:
               
111-477
               

               
Cow position:
               
chr9:63745730-63746086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 85
               

               
Conread position:
               
111-479
               

               
Cow position:
               
chr9:32266472-32266111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
22, 28
               

               
Conread position:
               
111-479
               

               
Cow position:
               
chr9:38961513-38961153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 22
               

               
Conread position:
               
111-479
               

               
Cow position:
               
chr9:61997688-61997312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 49
               

               
Conread position:
               
111-483
               

               
Cow position:
               
chr9:26403700-26404077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 186
               

               
Conread position:
               
111-484
               

               
Cow position:
               
chr9:64155936-64155567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 148
               

               
Conread position:
               
112-291
               

               
Cow position:
               
chr9:41781570-41781752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
84, 88
               

               
Conread position:
               
112-298
               

               
Cow position:
               
chr9:25400282-25400091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
144, 70
               

               
Conread position:
               
112-338
               

               
Cow position:
               
chr9:33696952-33697174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
143, 33
               

               
Conread position:
               
112-339
               

               
Cow position:
               
chr9:6596314-6596088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
152, 53
               

               
Conread position:
               
112-341
               

               
Cow position:
               
chr9:1867367-1867598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
142, 117
               

               
Conread position:
               
112-355
               

               
Cow position:
               
chr9:11304159-11303918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
112-408
               

               
Cow position:
               
chr9:28392110-28391818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
28, 141
               

               
Conread position:
               
112-411
               

               
Cow position:
               
chr9:43443720-43444011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
112-426
               

               
Cow position:
               
chr9:4580488-4580189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
84, 88
               

               
Conread position:
               
112-438
               

               
Cow position:
               
chr9:6839909-6840254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
112-457
               

               
Cow position:
               
chr9:9753474-9753133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 21
               

               
Conread position:
               
112-476
               

               
Cow position:
               
chr9:28983099-28983462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
141, 75
               

               
Conread position:
               
112-479
               

               
Cow position:
               
chr9:7409679-7410066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
112-479
               

               
Cow position:
               
chr9:54437179-54437536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
55, 135
               

               
Conread position:
               
112-480
               

               
Cow position:
               
chr9:17310645-17310277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 21
               

               
Conread position:
               
112-489
               

               
Cow position:
               
chr9:64091595-64091983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 79
               

               
Conread position:
               
112-491
               

               
Cow position:
               
chr9:14975003-14974628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 87
               

               
Conread position:
               
113-306
               

               
Cow position:
               
chr9:46664741-46664935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
113-436
               

               
Cow position:
               
chr9:56011416-56011738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
42, 51
               

               
Conread position:
               
113-457
               

               
Cow position:
               
chr9:7362945-7363289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 78
               

               
Conread position:
               
113-477
               

               
Cow position:
               
chr9:45756280-45756639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 190
               

               
Conread position:
               
113-478
               

               
Cow position:
               
chr9:22443710-22443329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 190
               

               
Conread position:
               
113-483
               

               
Cow position:
               
chr9:5433549-5433919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 235
               

               
Conread position:
               
113-492
               

               
Cow position:
               
chr9:52000936-52001304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 38
               

               
Conread position:
               
113-494
               

               
Cow position:
               
chr9:42446066-42445686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 236
               

               
Conread position:
               
113-494
               

               
Cow position:
               
chr9:58134086-58133725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 67
               

               
Conread position:
               
114-391
               

               
Cow position:
               
chr9:50543509-50543224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
58, 14
               

               
Conread position:
               
114-457
               

               
Cow position:
               
chr9:38846415-38846087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
114-479
               

               
Cow position:
               
chr9:10309078-10308723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 62
               

               
Conread position:
               
114-485
               

               
Cow position:
               
chr9:32371833-32371470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 22
               

               
Conread position:
               
114-488
               

               
Cow position:
               
chr9:3070492-3070130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
114-490
               

               
Cow position:
               
chr9:3379061-3379407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
114-490
               

               
Cow position:
               
chr9:56252820-56253194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
119, 24
               

               
Conread position:
               
114-493
               

               
Cow position:
               
chr9:26345051-26344687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
16, 121
               

               
Conread position:
               
115-282
               

               
Cow position:
               
chr9:29819638-29819805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
115-461
               

               
Cow position:
               
chr9:55889734-55890076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 13
               

               
Conread position:
               
115-485
               

               
Cow position:
               
chr9:11299761-11299407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 76
               

               
Conread position:
               
116-341
               

               
Cow position:
               
chr9:2976807-2977012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
219, 41
               

               
Conread position:
               
117-460
               

               
Cow position:
               
chr9:1949836-1950184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 209
               

               
Conread position:
               
118-479
               

               
Cow position:
               
chr9:33092880-33093228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
13, 73
               

               
Conread position:
               
120-410
               

               
Cow position:
               
chr9:19493542-19493244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 222
               

               
Conread position:
               
121-281
               

               
Cow position:
               
chr9:38289397-38289236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
132, 75
               

               
Conread position:
               
121-306
               

               
Cow position:
               
chr9:23956055-23955870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
121-376
               

               
Cow position:
               
chr9:49293218-49292968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
138, 215
               

               
Conread position:
               
121-440
               

               
Cow position:
               
chr9:389090-388770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 34
               

               
Conread position:
               
121-469
               

               
Cow position:
               
chr9:32732754-32732411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 71
               

               
Conread position:
               
121-489
               

               
Cow position:
               
chr9:36445545-36445915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 38
               

               
Conread position:
               
121-491
               

               
Cow position:
               
chr9:20319129-20318780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
214, 17
               

               
Conread position:
               
121-492
               

               
Cow position:
               
chr9:5509651-5510021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 9
               

               
Conread position:
               
121-492
               

               
Cow position:
               
chr9:50607020-50606656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
124, 73
               

               
Conread position:
               
122-329
               

               
Cow position:
               
chr9:26310432-26310639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
129, 179
               

               
Conread position:
               
122-342
               

               
Cow position:
               
chr9:51557559-51557347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
136, 8
               

               
Conread position:
               
122-494
               

               
Cow position:
               
chr9:41679673-41680033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 210
               

               
Conread position:
               
123-355
               

               
Cow position:
               
chr9:36843720-36843947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
89, 135
               

               
Conread position:
               
123-480
               

               
Cow position:
               
chr9:3220063-3220404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
125, 220
               

               
Conread position:
               
123-494
               

               
Cow position:
               
chr9:41513559-41513918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 35
               

               
Conread position:
               
124-479
               

               
Cow position:
               
chr9:44915169-44914812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 161
               

               
Conread position:
               
124-490
               

               
Cow position:
               
chr9:20090974-20091333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 177
               

               
Conread position:
               
126-480
               

               
Cow position:
               
chr9:9823576-9823234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
70, 75
               

               
Conread position:
               
136-368
               

               
Cow position:
               
chr9:27029765-27029531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
89, 110
               

               
Conread position:
               
137-475
               

               
Cow position:
               
chr9:17928698-17929053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 237
               

               
Conread position:
               
137-479
               

               
Cow position:
               
chr9:6089030-6089381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 28
               

               
Conread position:
               
138-337
               

               
Cow position:
               
chr9:43936887-43937084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
138-422
               

               
Cow position:
               
chr9:11313568-11313280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 160
               

               
Conread position:
               
138-439
               

               
Cow position:
               
chr9:49709789-49710088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
116, 53
               

               
Conread position:
               
138-443
               

               
Cow position:
               
chr9:5209522-5209832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
112, 205
               

               
Conread position:
               
138-462
               

               
Cow position:
               
chr9:4646383-4646061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 201
               

               
Conread position:
               
138-479
               

               
Cow position:
               
chr9:24997575-24997232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 32
               

               
Conread position:
               
138-484
               

               
Cow position:
               
chr9:43911872-43912218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
89, 17
               

               
Conread position:
               
138-486
               

               
Cow position:
               
chr9:28947804-28948143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
124, 58
               

               
Conread position:
               
139-486
               

               
Cow position:
               
chr9:4861327-4861680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
104, 200
               

               
Conread position:
               
140-491
               

               
Cow position:
               
chr9:8534746-8534388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 160
               

               
Conread position:
               
140-492
               

               
Cow position:
               
chr9:20989514-20989157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 130
               

               
Conread position:
               
142-461
               

               
Cow position:
               
chr9:5162104-5161800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
143-362
               

               
Cow position:
               
chr9:1756198-1755975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
97, 104
               

               
Conread position:
               
143-405
               

               
Cow position:
               
chr9:4512435-4512701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
97, 57
               

               
Conread position:
               
143-439
               

               
Cow position:
               
chr9:32815599-32815882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
97, 103
               

               
Conread position:
               
143-440
               

               
Cow position:
               
chr9:61492979-61493272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
97, 104
               

               
Conread position:
               
143-449
               

               
Cow position:
               
chr9:38615015-38614712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
97, 45
               

               
Conread position:
               
143-477
               

               
Cow position:
               
chr9:788766-789075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
95, 103
               

               
Conread position:
               
143-479
               

               
Cow position:
               
chr9:12428553-12428219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
114, 65
               

               
Conread position:
               
143-479
               

               
Cow position:
               
chr9:20681459-20681122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
96, 230
               

               
Conread position:
               
143-479
               

               
Cow position:
               
chr9:21030255-21030600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 103
               

               
Conread position:
               
143-479
               

               
Cow position:
               
chr9:24726718-24726394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
85, 65
               

               
Conread position:
               
143-479
               

               
Cow position:
               
chr9:25964886-25964540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
143-479
               

               
Cow position:
               
chr9:49983142-49982813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 97
               

               
Conread position:
               
143-483
               

               
Cow position:
               
chr9:7866021-7866353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
82, 103
               

               
Conread position:
               
143-485
               

               
Cow position:
               
chr9:31077723-31077388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 103
               

               
Conread position:
               
143-490
               

               
Cow position:
               
chr9:35904798-35904456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 199
               

               
Conread position:
               
145-478
               

               
Cow position:
               
chr9:47906333-47906007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
34, 151
               

               
Conread position:
               
147-414
               

               
Cow position:
               
chr9:26440861-26440577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
147-460
               

               
Cow position:
               
chr9:43207423-43207114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
91, 99
               

               
Conread position:
               
147-475
               

               
Cow position:
               
chr9:22114684-22114353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 61
               

               
Conread position:
               
147-477
               

               
Cow position:
               
chr9:35375377-35375703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 29
               

               
Conread position:
               
147-479
               

               
Cow position:
               
chr9:20318621-20318298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
147-479
               

               
Cow position:
               
chr9:25933530-25933213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
92, 100
               

               
Conread position:
               
147-492
               

               
Cow position:
               
chr9:8997511-8997853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
238, 96
               

               
Conread position:
               
148-414
               

               
Cow position:
               
chr9:53211539-53211278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
100, 150
               

               
Conread position:
               
149-479
               

               
Cow position:
               
chr9:25546593-25546917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 52
               

               
Conread position:
               
151-490
               

               
Cow position:
               
chr9:15983117-15982783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
89, 95
               

               
Conread position:
               
160-461
               

               
Cow position:
               
chr9:63905643-63905338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
79, 101
               

               
Conread position:
               
162-379
               

               
Cow position:
               
chr9:41518660-41518434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
55, 49
               

               
Conread position:
               
162-414
               

               
Cow position:
               
chr9:17799591-17799849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
13, 180
               

               
Conread position:
               
165-382
               

               
Cow position:
               
chr9:16121137-16121355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 164
               

               
Conread position:
               
165-483
               

               
Cow position:
               
chr9:5227203-5226877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 39
               

               
Conread position:
               
166-414
               

               
Cow position:
               
chr9:44833993-44833746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
74, 100
               

               
Conread position:
               
166-461
               

               
Cow position:
               
chr9:5441959-5442258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
77, 179
               

               
Conread position:
               
166-476
               

               
Cow position:
               
chr9:47472656-47472977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
74, 24
               

               
Conread position:
               
166-490
               

               
Cow position:
               
chr9:38343860-38344190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 28
               

               
Conread position:
               
166-494
               

               
Cow position:
               
chr9:35849874-35850197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 123
               

               
Conread position:
               
169-460
               

               
Cow position:
               
chr9:41789257-41789543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 157
               

               
Conread position:
               
169-485
               

               
Cow position:
               
chr9:9416422-9416117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 23
               

               
Conread position:
               
169-494
               

               
Cow position:
               
chr9:35533980-35533653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 174
               

               
Conread position:
               
173-414
               

               
Cow position:
               
chr9:3371544-3371798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
70, 138
               

               
Conread position:
               
173-445
               

               
Cow position:
               
chr9:28735465-28735728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
67, 73
               

               
Conread position:
               
173-461
               

               
Cow position:
               
chr9:6225477-6225186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 10
               

               
Conread position:
               
173-471
               

               
Cow position:
               
chr9:3387666-3387967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 167
               

               
Conread position:
               
173-483
               

               
Cow position:
               
chr9:3410759-3411056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
245, 25
               

               
Conread position:
               
173-492
               

               
Cow position:
               
chr9:1952293-1951973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 28
               

               
Conread position:
               
179-432
               

               
Cow position:
               
chr9:50703128-50702875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
62, 67
               

               
Conread position:
               
184-404
               

               
Cow position:
               
chr9:8919979-8920207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
70, 14
               

               
Conread position:
               
187-400
               

               
Cow position:
               
chr9:40543334-40543117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
53, 59
               

               
Conread position:
               
187-414
               

               
Cow position:
               
chr9:43048628-43048407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
53, 59
               

               
Conread position:
               
195-386
               

               
Cow position:
               
chr9:31270779-31270969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
58, 143
               

               
Conread position:
               
195-497
               

               
Cow position:
               
chr9:54998032-54997720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
31, 152
               

               
Conread position:
               
198-382
               

               
Cow position:
               
chr9:8524844-8525021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
51, 22
               

               
Conread position:
               
200-460
               

               
Cow position:
               
chr9:34919256-34919001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
52, 67
               

               
Conread position:
               
200-470
               

               
Cow position:
               
chr9:40105471-40105751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
70, 270
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr9:4128777-4128507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 133
               

               
Conread position:
               
200-483
               

               
Cow position:
               
chr9:1997141-1997420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
52, 106
               

               
Conread position:
               
200-483
               

               
Cow position:
               
chr9:5399740-5400003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
200-491
               

               
Cow position:
               
chr9:10092390-10092097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
55, 76
               

               
Conread position:
               
202-381
               

               
Cow position:
               
chr9:31638639-31638455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
9, 144
               

               
Conread position:
               
202-485
               

               
Cow position:
               
chr9:36623425-36623162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
203-489
               

               
Cow position:
               
chr9:20738703-20738996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
46, 174
               

               
Conread position:
               
203-494
               

               
Cow position:
               
chr9:29035029-29034737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
49, 137
               

               
Conread position:
               
204-384
               

               
Cow position:
               
chr9:62151115-62151290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
207-476
               

               
Cow position:
               
chr9:5531956-5532233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 144
               

               
Conread position:
               
207-492
               

               
Cow position:
               
chr9:64517087-64516800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
208-476
               

               
Cow position:
               
chr9:1712464-1712207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
47, 85
               

               
Conread position:
               
210-426
               

               
Cow position:
               
chr9:32710940-32711163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
8, 135
               

               
Conread position:
               
210-489
               

               
Cow position:
               
chr9:26390780-26391058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 130
               

               
Conread position:
               
212-438
               

               
Cow position:
               
chr9:40603961-40604193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
214-341
               

               
Cow position:
               
chr9:5069084-5069212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
214-413
               

               
Cow position:
               
chr9:51011518-51011322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
171, 35
               

               
Conread position:
               
214-474
               

               
Cow position:
               
chr9:30749565-30749306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
216-398
               

               
Cow position:
               
chr9:14358183-14358365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
39, 125
               

               
Conread position:
               
216-414
               

               
Cow position:
               
chr9:1879400-1879595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 64
               

               
Conread position:
               
216-419
               

               
Cow position:
               
chr9:6118129-6117923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
38, 65
               

               
Conread position:
               
216-420
               

               
Cow position:
               
chr9:50667441-50667649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
38, 128
               

               
Conread position:
               
216-475
               

               
Cow position:
               
chr9:18002934-18002669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
216-479
               

               
Cow position:
               
chr9:57951301-57951045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
47, 58
               

               
Conread position:
               
216-490
               

               
Cow position:
               
chr9:34000600-34000318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 74
               

               
Conread position:
               
220-420
               

               
Cow position:
               
chr9:58734392-58734600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
34, 123
               

               
Conread position:
               
220-493
               

               
Cow position:
               
chr9:23027828-23028090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
37, 80
               

               
Conread position:
               
222-370
               

               
Cow position:
               
chr9:4324131-4323983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 116
               

               
Conread position:
               
222-490
               

               
Cow position:
               
chr9:27077216-27076954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 52
               

               
Conread position:
               
222-492
               

               
Cow position:
               
chr9:32812375-32812643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 40
               

               
Conread position:
               
225-439
               

               
Cow position:
               
chr9:51004923-51005131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
29, 50
               

               
Conread position:
               
225-483
               

               
Cow position:
               
chr9:58439753-58439494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
22, 65
               

               
Conread position:
               
225-493
               

               
Cow position:
               
chr9:35306089-35305823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
30, 118
               

               
Conread position:
               
226-457
               

               
Cow position:
               
chr9:16182457-16182228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
27, 48
               

               
Conread position:
               
227-485
               

               
Cow position:
               
chr9:22228049-22227795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
27, 109
               

               
Conread position:
               
229-479
               

               
Cow position:
               
chr9:30664747-30664495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 100
               

               
Conread position:
               
232-462
               

               
Cow position:
               
chr9:29578282-29578511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 121
               

               
Conread position:
               
235-485
               

               
Cow position:
               
chr9:1984485-1984232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
17, 131
               

               
Conread position:
               
236-494
               

               
Cow position:
               
chr9:30189138-30189398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
17, 32
               

               
Conread position:
               
246-479
               

               
Cow position:
               
chr9:5319687-5319913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
246-489
               

               
Cow position:
               
chr9:29330587-29330366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
246-492
               

               
Cow position:
               
chr9:39971100-39971330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
255-460
               

               
Cow position:
               
chr9:41995772-41995979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 87
               

               
Conread position:
               
255-471
               

               
Cow position:
               
chr9:9490855-9491068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
80, 33
               

               
Conread position:
               
255-472
               

               
Cow position:
               
chr9:42998405-42998194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
255-476
               

               
Cow position:
               
chr9:16218584-16218362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
69, 41
               

               
Conread position:
               
255-479
               

               
Cow position:
               
chr9:20394057-20393844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
255-492
               

               
Cow position:
               
chr9:48343664-48343898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
123, 84
               

               
Conread position:
               
256-489
               

               
Cow position:
               
chr9:58673803-58674035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
124, 9
               

               
Conread position:
               
257-490
               

               
Cow position:
               
chr9:37528518-37528751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
134, 78
               

               
Conread position:
               
257-490
               

               
Cow position:
               
chr9:41416416-41416645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
257-490
               

               
Cow position:
               
chr9:53608330-53608099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
128, 78
               

               
Conread position:
               
258-471
               

               
Cow position:
               
chr9:36066974-36067181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
73, 80
               

               
Conread position:
               
258-490
               

               
Cow position:
               
chr9:45171101-45170874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
259-460
               

               
Cow position:
               
chr9:41652852-41653054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
126, 76
               

               
Conread position:
               
261-479
               

               
Cow position:
               
chr9:42585562-42585342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 83
               

               
Conread position:
               
263-455
               

               
Cow position:
               
chr9:38875506-38875314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
120, 75
               

               
Conread position:
               
264-480
               

               
Cow position:
               
chr9:41412240-41412026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
187, 53
               

               
Conread position:
               
270-494
               

               
Cow position:
               
chr9:17785384-17785161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
219, 69
               

               
Conread position:
               
273-477
               

               
Cow position:
               
chr9:10877791-10877584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
275-479
               

               
Cow position:
               
chr9:38184402-38184194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
276-457
               

               
Cow position:
               
chr9:37141315-37141489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
277-394
               

               
Cow position:
               
chr9:49279559-49279673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
285-483
               

               
Cow position:
               
chr9:31662557-31662757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
104, 5
               

               
Conread position:
               
286-489
               

               
Cow position:
               
chr9:35100961-35101161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
289-477
               

               
Cow position:
               
chr9:22616721-22616901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
292-480
               

               
Cow position:
               
chr9:25969442-25969631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
302-449
               

               
Cow position:
               
chr9:62134510-62134366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
69, 33
               

               
Conread position:
               
307-483
               

               
Cow position:
               
chr9:20237895-20237720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
130, 126
               

               
Conread position:
               
319-494
               

               
Cow position:
               
chr9:8418255-8418079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 113
               

               
Conread position:
               
321-479
               

               
Cow position:
               
chr9:37510142-37510301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
48, 104
               
Show alignments to all cow chromosomes.