Cow genome map

Conread name: OvF1-UMC-pd12fol-013-f01

Conread position: 1-315
Cow position: chr10:54930991-54930691 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 46

Conread position: 1-317
Cow position: chr10:38344154-38343837 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 110

Conread position: 1-322
Cow position: chr10:36469245-36468936 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 223
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 203, 72

Conread position: 1-331
Cow position: chr10:29011447-29011131 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 239
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 313, 110

Conread position: 1-332
Cow position: chr10:50135778-50136105 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 102

Conread position: 1-332
Cow position: chr10:57988789-57988458 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 110

Conread position: 2-321
Cow position: chr10:40641169-40641478 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 227
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 78, 39

Conread position: 2-329
Cow position: chr10:24311157-24310851 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 48, 112

Conread position: 2-332
Cow position: chr10:10583325-10583655 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 11

Conread position: 2-332
Cow position: chr10:28256210-28255878 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 108

Conread position: 2-332
Cow position: chr10:39181002-39181334 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 108

Conread position: 2-332
Cow position: chr10:62407569-62407244 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 11

Conread position: 3-158
Cow position: chr10:8291144-8291295 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 108, 0

Conread position: 3-172
Cow position: chr10:38537289-38537124 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 12, 20

Conread position: 3-201
Cow position: chr10:279400-279203 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 186, 107

Conread position: 3-241
Cow position: chr10:16926740-16926979 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 137, 108

Conread position: 3-304
Cow position: chr10:32701935-32702230 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 108

Conread position: 3-317
Cow position: chr10:14334638-14334314 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 3-321
Cow position: chr10:1378713-1379021 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 56

Conread position: 3-321
Cow position: chr10:21488173-21488483 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 91

Conread position: 3-322
Cow position: chr10:19512788-19513106 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 108

Conread position: 3-322
Cow position: chr10:30684285-30683967 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 110

Conread position: 3-324
Cow position: chr10:7280895-7280583 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 108

Conread position: 3-325
Cow position: chr10:16477969-16478277 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 234
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 185, 61

Conread position: 3-332
Cow position: chr10:14805053-14805384 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 107

Conread position: 3-332
Cow position: chr10:19840890-19841217 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 104

Conread position: 3-332
Cow position: chr10:22102444-22102772 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 108

Conread position: 3-332
Cow position: chr10:29845437-29845117 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 30

Conread position: 3-332
Cow position: chr10:40398206-40398526 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 228
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 303, 108

Conread position: 3-332
Cow position: chr10:55094478-55094804 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 61

Conread position: 6-324
Cow position: chr10:58812541-58812237 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 216
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 64, 0

Conread position: 6-331
Cow position: chr10:32558559-32558887 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 231
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 183, 25

Conread position: 8-255
Cow position: chr10:27664054-27663808 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 183
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 132, 102

Conread position: 8-332
Cow position: chr10:21739535-21739222 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 230
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 181, 102

Conread position: 10-289
Cow position: chr10:38544711-38544444 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 201
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 180, 103

Conread position: 10-332
Cow position: chr10:126502-126818 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 46

Conread position: 10-332
Cow position: chr10:37771100-37771422 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 101

Conread position: 11-190
Cow position: chr10:42750035-42750210 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 171, 60

Conread position: 11-268
Cow position: chr10:31524984-31525226 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 189
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 104, 0

Conread position: 11-295
Cow position: chr10:1665316-1665034 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 178, 99

Conread position: 11-316
Cow position: chr10:60361113-60361407 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 211
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 177, 91

Conread position: 11-317
Cow position: chr10:47908149-47908454 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 76

Conread position: 11-317
Cow position: chr10:57502025-57502323 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 216
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 171, 100

Conread position: 11-322
Cow position: chr10:11684416-11684102 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 99

Conread position: 11-324
Cow position: chr10:39815183-39814871 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 100

Conread position: 11-329
Cow position: chr10:39778900-39778588 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 102

Conread position: 11-330
Cow position: chr10:2119798-2119473 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 141

Conread position: 11-331
Cow position: chr10:39040080-39039765 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 150

Conread position: 11-332
Cow position: chr10:7897267-7896948 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr10:20375617-20375304 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 101

Conread position: 11-332
Cow position: chr10:41568316-41568639 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr10:41878138-41878462 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 102

Conread position: 11-332
Cow position: chr10:57556120-57555797 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 12-310
Cow position: chr10:48397882-48397591 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 207
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 95, 115

Conread position: 15-188
Cow position: chr10:29109923-29109761 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 88, 0

Conread position: 15-317
Cow position: chr10:28946704-28946996 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 173, 52

Conread position: 15-317
Cow position: chr10:64146148-64146446 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 97

Conread position: 15-332
Cow position: chr10:20369855-20369566 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 70, 0

Conread position: 15-332
Cow position: chr10:53321175-53320858 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 97

Conread position: 16-321
Cow position: chr10:51782190-51781887 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 35

Conread position: 16-329
Cow position: chr10:53485992-53485699 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 215
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 11, 56

Conread position: 17-272
Cow position: chr10:55285183-55285434 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 94

Conread position: 17-317
Cow position: chr10:29722823-29722532 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 208
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 57, 99

Conread position: 17-321
Cow position: chr10:14843002-14843289 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 210
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 275, 94

Conread position: 17-322
Cow position: chr10:32429952-32430241 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 215
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 298, 90

Conread position: 17-331
Cow position: chr10:37307809-37308113 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 208
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 173, 93

Conread position: 17-331
Cow position: chr10:39878207-39877881 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 225
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 67, 10

Conread position: 17-331
Cow position: chr10:40151031-40150731 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 100

Conread position: 18-332
Cow position: chr10:29631576-29631262 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 92

Conread position: 19-228
Cow position: chr10:17433580-17433788 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 162
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 170, 92

Conread position: 19-331
Cow position: chr10:38849513-38849810 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 225
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 169, 94

Conread position: 25-324
Cow position: chr10:33870514-33870812 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 85

Conread position: 25-329
Cow position: chr10:42111650-42111952 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 46

Conread position: 26-322
Cow position: chr10:21898856-21898579 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 206
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 233, 72

Conread position: 38-321
Cow position: chr10:20382776-20382505 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 217
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 151, 75

Conread position: 52-315
Cow position: chr10:6538643-6538912 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 96

Conread position: 56-331
Cow position: chr10:21078885-21079153 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 189
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 98, 61

Conread position: 62-332
Cow position: chr10:29109702-29109448 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 127, 41

Conread position: 64-332
Cow position: chr10:14862938-14863194 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 171, 47

Conread position: 83-328
Cow position: chr10:41774319-41774073 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 168
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 90, 30

Show alignments to all cow chromosomes.