Cow genome map

Conread name: OvF1-UMC-pd12fol-013-f01

Conread position: 1-161
Cow position: chr11:32982981-32982825 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 110, 0

Conread position: 1-317
Cow position: chr11:26070203-26069886 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 93

Conread position: 1-327
Cow position: chr11:40775154-40774830 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 112

Conread position: 1-332
Cow position: chr11:26124084-26123749 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 113

Conread position: 1-332
Cow position: chr11:38834589-38834270 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 115

Conread position: 2-309
Cow position: chr11:9601465-9601178 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 231
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 61, 11

Conread position: 2-322
Cow position: chr11:43513782-43513458 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 11

Conread position: 2-323
Cow position: chr11:20733392-20733072 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 108

Conread position: 2-331
Cow position: chr11:18887701-18888007 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 233
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 219, 16

Conread position: 2-332
Cow position: chr11:11988981-11989310 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 11

Conread position: 2-332
Cow position: chr11:17106836-17106509 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 108

Conread position: 2-332
Cow position: chr11:30253079-30253406 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 109

Conread position: 2-332
Cow position: chr11:41169845-41169518 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 11

Conread position: 2-332
Cow position: chr11:76373141-76372823 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 44

Conread position: 3-264
Cow position: chr11:31861749-31862018 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 109, 220

Conread position: 3-290
Cow position: chr11:42363597-42363883 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 196
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 150, 55

Conread position: 3-317
Cow position: chr11:72310186-72309878 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 3-332
Cow position: chr11:1495183-1494856 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 108

Conread position: 3-332
Cow position: chr11:3493836-3494167 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 107

Conread position: 3-332
Cow position: chr11:10848298-10848630 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 96

Conread position: 3-332
Cow position: chr11:23880877-23881205 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 108

Conread position: 3-332
Cow position: chr11:24394161-24394493 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 108

Conread position: 3-332
Cow position: chr11:29667758-29667432 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 110

Conread position: 3-332
Cow position: chr11:32452675-32453004 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 107

Conread position: 3-332
Cow position: chr11:44582487-44582164 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 43

Conread position: 3-332
Cow position: chr11:52420250-52420580 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 108

Conread position: 3-332
Cow position: chr11:53431202-53430853 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 253
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 81, 109

Conread position: 3-332
Cow position: chr11:71330443-71330773 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 105

Conread position: 3-332
Cow position: chr11:85392978-85392656 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 108

Conread position: 4-323
Cow position: chr11:64355671-64355979 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 217
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 46, 109

Conread position: 6-274
Cow position: chr11:14728197-14727938 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 178
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 119, 0

Conread position: 6-302
Cow position: chr11:75554148-75553854 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 211
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 36, 108

Conread position: 8-115
Cow position: chr11:44490766-44490659 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 10-322
Cow position: chr11:12357559-12357246 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 101

Conread position: 10-329
Cow position: chr11:26548380-26548697 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 101

Conread position: 10-330
Cow position: chr11:20506083-20506413 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 232
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 100, 313

Conread position: 10-330
Cow position: chr11:20511459-20511788 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 232
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 100, 307

Conread position: 10-332
Cow position: chr11:58135251-58135572 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 101

Conread position: 10-332
Cow position: chr11:63654479-63654156 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 89

Conread position: 11-197
Cow position: chr11:37476126-37475943 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 136, 99

Conread position: 11-210
Cow position: chr11:28108993-28109191 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 178, 99

Conread position: 11-311
Cow position: chr11:87142437-87142730 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 22

Conread position: 11-317
Cow position: chr11:33977600-33977296 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 224
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 171, 102

Conread position: 11-321
Cow position: chr11:17547018-17547327 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 100

Conread position: 11-321
Cow position: chr11:67845715-67845407 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-324
Cow position: chr11:28228910-28228601 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 11-324
Cow position: chr11:29613138-29612828 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-325
Cow position: chr11:50026892-50026570 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 171, 103

Conread position: 11-332
Cow position: chr11:9733822-9733503 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 99

Conread position: 11-332
Cow position: chr11:44252653-44252975 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 101

Conread position: 11-332
Cow position: chr11:44518009-44517686 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr11:53286312-53285996 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 102

Conread position: 11-332
Cow position: chr11:57627197-57626874 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr11:61400222-61399909 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 228
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr11:73134145-73134481 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 242
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 177, 99

Conread position: 12-331
Cow position: chr11:3856078-3856389 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 233
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 176, 25

Conread position: 15-318
Cow position: chr11:39804598-39804884 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 218
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 175, 71

Conread position: 15-319
Cow position: chr11:21898983-21898683 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 77

Conread position: 15-327
Cow position: chr11:66729955-66730256 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 84

Conread position: 16-317
Cow position: chr11:30122982-30122685 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 95

Conread position: 16-323
Cow position: chr11:47759417-47759114 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 97

Conread position: 16-323
Cow position: chr11:67154549-67154846 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 224
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 155, 68

Conread position: 16-332
Cow position: chr11:9156287-9155971 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 96

Conread position: 16-332
Cow position: chr11:19063212-19062899 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 94

Conread position: 17-317
Cow position: chr11:49558814-49558530 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 219
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 248, 20

Conread position: 17-322
Cow position: chr11:4269540-4269235 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 93

Conread position: 17-331
Cow position: chr11:42311579-42311266 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 219
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 62, 70

Conread position: 17-332
Cow position: chr11:4026748-4026434 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 49

Conread position: 17-332
Cow position: chr11:44156388-44156084 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 94

Conread position: 18-273
Cow position: chr11:50042270-50042032 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 175
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 242, 55

Conread position: 18-332
Cow position: chr11:67451357-67451670 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 35

Conread position: 19-295
Cow position: chr11:74424459-74424733 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 92

Conread position: 19-331
Cow position: chr11:28391832-28392137 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 87

Conread position: 20-317
Cow position: chr11:26074103-26073806 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 93

Conread position: 22-282
Cow position: chr11:10216274-10216016 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 171
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 50, 65

Conread position: 25-313
Cow position: chr11:18070068-18069790 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 163, 66

Conread position: 25-322
Cow position: chr11:19101617-19101327 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 86

Conread position: 25-332
Cow position: chr11:81851843-81851561 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 216
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 26

Conread position: 33-330
Cow position: chr11:54216381-54216084 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 78

Conread position: 34-331
Cow position: chr11:26784138-26784431 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 78

Conread position: 35-322
Cow position: chr11:21928306-21928028 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 213
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 194, 76

Conread position: 37-332
Cow position: chr11:27657327-27657605 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 216
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 151, 74

Conread position: 38-237
Cow position: chr11:4034463-4034267 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 184, 61

Conread position: 80-332
Cow position: chr11:25865911-25865664 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 109, 30

Show alignments to all cow chromosomes.