Cow genome map

Conread name: OvF1-UMC-pd12fol-013-f01

Conread position: 1-241
Cow position: chr14:12899884-12900123 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 10, 111

Conread position: 1-332
Cow position: chr14:16272506-16272175 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 110

Conread position: 1-332
Cow position: chr14:20783241-20783588 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 166

Conread position: 1-332
Cow position: chr14:29046896-29046557 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 109

Conread position: 1-332
Cow position: chr14:35385025-35384709 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 90

Conread position: 2-319
Cow position: chr14:19327470-19327157 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 11

Conread position: 2-329
Cow position: chr14:16918926-16918602 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 11

Conread position: 3-184
Cow position: chr14:32447582-32447755 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 108, 0

Conread position: 3-244
Cow position: chr14:37224982-37225223 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 182
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 156, 108

Conread position: 3-256
Cow position: chr14:12742277-12742029 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 188
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 187, 108

Conread position: 3-320
Cow position: chr14:30595578-30595248 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 3-321
Cow position: chr14:48402359-48402056 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 226
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 81, 108

Conread position: 3-332
Cow position: chr14:13863305-13862976 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 108

Conread position: 3-332
Cow position: chr14:17000267-16999937 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 90

Conread position: 3-332
Cow position: chr14:22030654-22030329 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 107

Conread position: 3-332
Cow position: chr14:45081845-45082170 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 108

Conread position: 3-332
Cow position: chr14:46391740-46391420 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 108

Conread position: 3-332
Cow position: chr14:50111585-50111919 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 108

Conread position: 6-255
Cow position: chr14:10520705-10520461 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 173
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 182, 104

Conread position: 6-331
Cow position: chr14:38147799-38148112 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 25

Conread position: 8-271
Cow position: chr14:46637347-46637604 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 196
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 181, 91

Conread position: 8-277
Cow position: chr14:21744896-21745161 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 188
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 180, 103

Conread position: 8-332
Cow position: chr14:13779744-13780072 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 67

Conread position: 8-332
Cow position: chr14:44775242-44774927 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 53

Conread position: 10-332
Cow position: chr14:48253516-48253197 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 97

Conread position: 11-219
Cow position: chr14:33392999-33392792 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 178, 99

Conread position: 11-274
Cow position: chr14:17490660-17490398 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 99

Conread position: 11-332
Cow position: chr14:751364-751682 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr14:5529860-5530178 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 97

Conread position: 11-332
Cow position: chr14:9046375-9046695 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 100

Conread position: 11-332
Cow position: chr14:10147672-10147990 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr14:12124385-12124067 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr14:15275051-15274718 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 102

Conread position: 11-332
Cow position: chr14:17760081-17759771 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 99

Conread position: 11-332
Cow position: chr14:27978159-27978471 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr14:45671248-45670920 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 99

Conread position: 11-332
Cow position: chr14:45710925-45710608 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 104

Conread position: 15-317
Cow position: chr14:33677872-33678166 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 27

Conread position: 15-329
Cow position: chr14:44227178-44227494 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 100

Conread position: 15-331
Cow position: chr14:40168929-40168620 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 94

Conread position: 15-331
Cow position: chr14:46466486-46466783 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 171, 98

Conread position: 15-332
Cow position: chr14:12611233-12611532 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 232
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 169, 58

Conread position: 16-322
Cow position: chr14:48601531-48601236 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 20

Conread position: 16-324
Cow position: chr14:23256551-23256254 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 16-331
Cow position: chr14:40341861-40342180 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 59

Conread position: 16-331
Cow position: chr14:43559039-43559356 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 95

Conread position: 16-332
Cow position: chr14:11153348-11153032 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 99

Conread position: 16-332
Cow position: chr14:29775277-29774974 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 100

Conread position: 16-332
Cow position: chr14:50139367-50139681 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 97

Conread position: 17-277
Cow position: chr14:30661255-30661008 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 179
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 77, 95

Conread position: 17-317
Cow position: chr14:13274414-13274704 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 96

Conread position: 17-318
Cow position: chr14:44552657-44552942 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 58

Conread position: 17-319
Cow position: chr14:38814676-38814381 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 171, 43

Conread position: 17-322
Cow position: chr14:5513742-5514039 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 94

Conread position: 17-330
Cow position: chr14:2951755-2951456 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 215
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 165, 97

Conread position: 17-332
Cow position: chr14:9514482-9514178 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 297, 93

Conread position: 17-332
Cow position: chr14:13303764-13304073 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 16

Conread position: 17-332
Cow position: chr14:17687309-17687617 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 54

Conread position: 17-332
Cow position: chr14:48826091-48826398 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 98

Conread position: 18-300
Cow position: chr14:13462325-13462607 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 93

Conread position: 18-302
Cow position: chr14:45086047-45086328 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 93

Conread position: 18-314
Cow position: chr14:44255951-44255659 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 93

Conread position: 18-318
Cow position: chr14:37455107-37454830 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 221
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 171, 85

Conread position: 18-332
Cow position: chr14:45678274-45677963 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 227
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 71, 96

Conread position: 19-321
Cow position: chr14:30735979-30736278 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 40

Conread position: 19-327
Cow position: chr14:30705507-30705192 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 225
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 124, 46

Conread position: 19-329
Cow position: chr14:30762072-30761764 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 216
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 163, 46

Conread position: 20-332
Cow position: chr14:44689878-44690191 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 91

Conread position: 26-331
Cow position: chr14:13579207-13579503 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 31-322
Cow position: chr14:190863-191153 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 80

Conread position: 32-279
Cow position: chr14:25692769-25693010 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 62, 83

Conread position: 40-331
Cow position: chr14:33240292-33240569 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 199
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 148, 54

Conread position: 63-321
Cow position: chr14:32447813-32448068 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 97, 48

Show alignments to all cow chromosomes.