Cow genome map

Conread name: OvF1-UMC-pd12fol-013-f01

Conread position: 1-188
Cow position: chr15:315045-314857 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 154, 110

Conread position: 1-317
Cow position: chr15:2077446-2077760 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 72

Conread position: 1-317
Cow position: chr15:7838054-7838369 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 12

Conread position: 1-332
Cow position: chr15:7261396-7261724 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 116

Conread position: 1-332
Cow position: chr15:8751194-8751514 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 92

Conread position: 1-332
Cow position: chr15:19737267-19736937 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 68

Conread position: 2-321
Cow position: chr15:4679051-4679370 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 5

Conread position: 2-324
Cow position: chr15:1238460-1238793 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 9

Conread position: 2-330
Cow position: chr15:20355809-20355475 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 231
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 82, 10

Conread position: 2-332
Cow position: chr15:580222-580546 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 71

Conread position: 2-332
Cow position: chr15:1765096-1765436 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 11

Conread position: 2-332
Cow position: chr15:6553028-6552697 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 11

Conread position: 2-332
Cow position: chr15:31359662-31359985 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 106

Conread position: 2-332
Cow position: chr15:35752525-35752187 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 11

Conread position: 3-190
Cow position: chr15:1042411-1042227 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 107, 0

Conread position: 3-291
Cow position: chr15:32712017-32712298 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 186, 96

Conread position: 3-300
Cow position: chr15:46052476-46052769 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 192
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 139, 107

Conread position: 3-321
Cow position: chr15:2588660-2588343 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 48

Conread position: 3-321
Cow position: chr15:21664950-21664634 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 108

Conread position: 3-322
Cow position: chr15:3260527-3260214 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 27

Conread position: 3-322
Cow position: chr15:4922938-4923252 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 55

Conread position: 3-324
Cow position: chr15:2013352-2013666 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 47

Conread position: 3-332
Cow position: chr15:58450-58774 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 37

Conread position: 3-332
Cow position: chr15:611508-611175 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 108

Conread position: 3-332
Cow position: chr15:9912437-9912113 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 91

Conread position: 3-332
Cow position: chr15:18332035-18331715 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 73

Conread position: 3-332
Cow position: chr15:18577505-18577831 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 108

Conread position: 3-332
Cow position: chr15:24295878-24296209 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 108

Conread position: 3-332
Cow position: chr15:32493082-32492765 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 108

Conread position: 3-332
Cow position: chr15:42530704-42531038 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 16

Conread position: 5-331
Cow position: chr15:4386547-4386869 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 107

Conread position: 6-322
Cow position: chr15:24718130-24718437 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 237
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 44, 117

Conread position: 10-317
Cow position: chr15:8100268-8100568 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 101

Conread position: 10-329
Cow position: chr15:15346313-15345995 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 101

Conread position: 10-332
Cow position: chr15:6155144-6154808 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 20

Conread position: 10-332
Cow position: chr15:7235047-7235374 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 89

Conread position: 11-204
Cow position: chr15:25206074-25206266 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 178, 103

Conread position: 11-215
Cow position: chr15:4142017-4141815 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 176, 99

Conread position: 11-219
Cow position: chr15:22378705-22378909 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 178, 99

Conread position: 11-229
Cow position: chr15:8409674-8409887 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 177, 106

Conread position: 11-291
Cow position: chr15:445415-445690 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 201
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 177, 88

Conread position: 11-300
Cow position: chr15:20750191-20750480 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 207
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 41, 100

Conread position: 11-301
Cow position: chr15:4950868-4951146 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 30

Conread position: 11-317
Cow position: chr15:31860418-31860108 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 110

Conread position: 11-332
Cow position: chr15:2646854-2646536 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr15:3009042-3008724 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 41

Conread position: 11-332
Cow position: chr15:4197263-4197585 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr15:5010836-5010513 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 100

Conread position: 11-332
Cow position: chr15:6383372-6383035 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 246
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 176, 100

Conread position: 12-153
Cow position: chr15:524067-523930 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 14-307
Cow position: chr15:17217321-17217044 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 200
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 172, 11

Conread position: 14-322
Cow position: chr15:28986236-28985931 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 211
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 69, 108

Conread position: 15-226
Cow position: chr15:32719939-32719718 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 154
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 97, 84

Conread position: 15-317
Cow position: chr15:17293853-17294148 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 30

Conread position: 15-322
Cow position: chr15:17148927-17149229 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 130

Conread position: 15-329
Cow position: chr15:2926113-2926427 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 79

Conread position: 15-329
Cow position: chr15:51715719-51716028 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 55

Conread position: 15-330
Cow position: chr15:5981154-5981462 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 96

Conread position: 15-330
Cow position: chr15:6079557-6079862 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 60

Conread position: 15-331
Cow position: chr15:1299754-1299430 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 98

Conread position: 15-331
Cow position: chr15:7550947-7551265 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 217
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 171, 96

Conread position: 15-331
Cow position: chr15:51675521-51675835 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 111

Conread position: 15-332
Cow position: chr15:4672242-4672552 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 96

Conread position: 16-200
Cow position: chr15:6386538-6386355 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 173, 97

Conread position: 16-322
Cow position: chr15:14581557-14581254 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 17

Conread position: 17-316
Cow position: chr15:4915997-4916273 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 210
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 26, 0

Conread position: 17-317
Cow position: chr15:21450489-21450784 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 26

Conread position: 17-322
Cow position: chr15:4823274-4823564 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 215
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 302, 82

Conread position: 17-322
Cow position: chr15:11293628-11293331 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 210
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 63, 53

Conread position: 17-330
Cow position: chr15:24794630-24794940 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 100

Conread position: 17-331
Cow position: chr15:50123127-50122814 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 93

Conread position: 17-331
Cow position: chr15:50147882-50148198 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 93

Conread position: 17-332
Cow position: chr15:4962442-4962750 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 82

Conread position: 18-320
Cow position: chr15:4927181-4927469 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 209
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 168, 27

Conread position: 18-331
Cow position: chr15:3182258-3181942 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 229
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 169, 37

Conread position: 18-332
Cow position: chr15:1773306-1773617 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 92

Conread position: 18-332
Cow position: chr15:7892523-7892229 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 72

Conread position: 18-332
Cow position: chr15:53299279-53299588 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 232
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 171, 33

Conread position: 19-277
Cow position: chr15:4813409-4813662 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 185
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 78, 17

Conread position: 19-331
Cow position: chr15:53409722-53410031 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 84

Conread position: 20-331
Cow position: chr15:3777867-3777564 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 214
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 95, 56

Conread position: 20-332
Cow position: chr15:35736602-35736914 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 91

Conread position: 20-332
Cow position: chr15:44071398-44071717 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 91

Conread position: 26-321
Cow position: chr15:2901450-2901156 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 85

Conread position: 28-322
Cow position: chr15:7965143-7964838 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 217
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 22, 80

Conread position: 30-240
Cow position: chr15:13677342-13677541 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 127, 69

Conread position: 32-332
Cow position: chr15:25654252-25653948 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 78

Conread position: 36-315
Cow position: chr15:36625436-36625182 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 203
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 81, 0

Conread position: 36-332
Cow position: chr15:7563816-7564115 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 216
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 12, 75

Conread position: 37-332
Cow position: chr15:4652200-4652490 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 73

Conread position: 45-324
Cow position: chr15:7938282-7938552 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 207
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 122, 66

Conread position: 48-323
Cow position: chr15:4686564-4686832 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 197
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 52, 64

Conread position: 54-324
Cow position: chr15:7545688-7545959 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 199
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 101, 57

Conread position: 55-332
Cow position: chr15:18266932-18266657 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 206
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 134, 55

Show alignments to all cow chromosomes.