Cow genome map
| Conread name: | OvF1-UMC-pd12fol-013-f01 |
| Conread position: | 1-254 |
| Cow position: | chr16:2410521-2410275 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 234, 110 |
| Conread position: | 1-321 |
| Cow position: | chr16:37481972-37481662 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 1-322 |
| Cow position: | chr16:837764-838082 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 93 |
| Conread position: | 1-332 |
| Cow position: | chr16:1567008-1566678 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 110 |
| Conread position: | 1-332 |
| Cow position: | chr16:2482692-2482359 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 110 |
| Conread position: | 1-332 |
| Cow position: | chr16:25442075-25442405 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 41 |
| Conread position: | 1-332 |
| Cow position: | chr16:25457030-25456705 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 41 |
| Conread position: | 2-158 |
| Cow position: | chr16:37480690-37480539 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 2-322 |
| Cow position: | chr16:15185522-15185841 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 11 |
| Conread position: | 2-322 |
| Cow position: | chr16:15477291-15477607 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 11 |
| Conread position: | 2-329 |
| Cow position: | chr16:4478520-4478201 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 11 |
| Conread position: | 2-331 |
| Cow position: | chr16:47474707-47475024 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 2-332 |
| Cow position: | chr16:3088756-3088428 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 14 |
| Conread position: | 2-332 |
| Cow position: | chr16:3330387-3330711 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 6 |
| Conread position: | 2-332 |
| Cow position: | chr16:15567706-15568032 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 11 |
| Conread position: | 2-332 |
| Cow position: | chr16:27593957-27594278 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 11 |
| Conread position: | 2-332 |
| Cow position: | chr16:31591466-31591143 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 11 |
| Conread position: | 2-332 |
| Cow position: | chr16:40295724-40295385 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 3-138 |
| Cow position: | chr16:15493953-15494085 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 3-223 |
| Cow position: | chr16:29984528-29984740 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 3-227 |
| Cow position: | chr16:41166197-41165982 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 159, 80 |
| Conread position: | 3-317 |
| Cow position: | chr16:10438701-10439016 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 108 |
| Conread position: | 3-321 |
| Cow position: | chr16:54324886-54324572 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 108 |
| Conread position: | 3-322 |
| Cow position: | chr16:37455552-37455247 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 108 |
| Conread position: | 3-332 |
| Cow position: | chr16:406590-406261 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 13 |
| Conread position: | 3-332 |
| Cow position: | chr16:2726780-2726437 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 152 |
| Conread position: | 3-332 |
| Cow position: | chr16:5485180-5485505 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 108 |
| Conread position: | 3-332 |
| Cow position: | chr16:8815655-8815330 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 108 |
| Conread position: | 3-332 |
| Cow position: | chr16:23251988-23251648 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 108 |
| Conread position: | 3-332 |
| Cow position: | chr16:23535441-23535122 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 108 |
| Conread position: | 3-332 |
| Cow position: | chr16:23983745-23984076 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 108 |
| Conread position: | 3-332 |
| Cow position: | chr16:25342407-25342747 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 149 |
| Conread position: | 3-332 |
| Cow position: | chr16:26664202-26664530 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 38 |
| Conread position: | 3-332 |
| Cow position: | chr16:27732931-27732606 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 109 |
| Conread position: | 3-332 |
| Cow position: | chr16:29047472-29047799 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 39 |
| Conread position: | 3-332 |
| Cow position: | chr16:43896825-43896486 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 149 |
| Conread position: | 10-322 |
| Cow position: | chr16:7676002-7675685 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 101 |
| Conread position: | 10-332 |
| Cow position: | chr16:34530759-34531074 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 133 |
| Conread position: | 11-316 |
| Cow position: | chr16:25001842-25001536 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 112 |
| Conread position: | 11-317 |
| Cow position: | chr16:21186072-21186377 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-317 |
| Cow position: | chr16:28169896-28169587 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 50 |
| Conread position: | 11-321 |
| Cow position: | chr16:28196788-28196478 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 99 |
| Conread position: | 11-324 |
| Cow position: | chr16:5662286-5662604 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 105 |
| Conread position: | 11-332 |
| Cow position: | chr16:11284049-11284367 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-332 |
| Cow position: | chr16:19779193-19778878 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 19 |
| Conread position: | 11-332 |
| Cow position: | chr16:25189105-25189416 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-332 |
| Cow position: | chr16:48334113-48333797 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 100 |
| Conread position: | 15-213 |
| Cow position: | chr16:42735930-42735745 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 174, 40 |
| Conread position: | 15-273 |
| Cow position: | chr16:49234169-49233918 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 15-322 |
| Cow position: | chr16:16897919-16898222 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 143, 27 |
| Conread position: | 15-327 |
| Cow position: | chr16:26105599-26105279 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 15-331 |
| Cow position: | chr16:337627-337964 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 91, 97 |
| Conread position: | 15-332 |
| Cow position: | chr16:16520293-16519993 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 304, 20 |
| Conread position: | 15-332 |
| Cow position: | chr16:23671158-23671479 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 140 |
| Conread position: | 15-332 |
| Cow position: | chr16:27714350-27714047 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 303, 76 |
| Conread position: | 15-332 |
| Cow position: | chr16:49221420-49221129 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 298, 20 |
| Conread position: | 15-332 |
| Cow position: | chr16:49255767-49255457 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 33 |
| Conread position: | 15-332 |
| Cow position: | chr16:51084613-51084933 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 100 |
| Conread position: | 16-219 |
| Cow position: | chr16:20331243-20331458 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 16-330 |
| Cow position: | chr16:20202456-20202746 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 38, 46 |
| Conread position: | 17-257 |
| Cow position: | chr16:56916609-56916371 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 49, 95 |
| Conread position: | 17-322 |
| Cow position: | chr16:5890460-5890764 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 68 |
| Conread position: | 17-322 |
| Cow position: | chr16:14665346-14665050 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 100 |
| Conread position: | 17-327 |
| Cow position: | chr16:19638524-19638824 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 235, 95 |
| Conread position: | 17-332 |
| Cow position: | chr16:1432654-1432965 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 73 |
| Conread position: | 17-332 |
| Cow position: | chr16:25086080-25086393 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 94 |
| Conread position: | 18-317 |
| Cow position: | chr16:28437012-28436711 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 41, 84 |
| Conread position: | 18-331 |
| Cow position: | chr16:17056506-17056198 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 224 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 216, 99 |
| Conread position: | 19-315 |
| Cow position: | chr16:23808793-23809075 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 98 |
| Conread position: | 26-283 |
| Cow position: | chr16:3918537-3918793 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 163, 84 |
| Conread position: | 26-316 |
| Cow position: | chr16:38023795-38024080 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 162, 81 |
| Conread position: | 26-332 |
| Cow position: | chr16:2238279-2237988 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 293, 68 |
| Conread position: | 29-332 |
| Cow position: | chr16:28470599-28470294 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 82 |
| Conread position: | 33-281 |
| Cow position: | chr16:25258304-25258544 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 156, 84 |
| Conread position: | 37-332 |
| Cow position: | chr16:33011-33300 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 131, 73 |
| Conread position: | 43-322 |
| Cow position: | chr16:26978617-26978889 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 178, 70 |
| Conread position: | 51-332 |
| Cow position: | chr16:19080463-19080741 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 59 |
Show alignments to all cow chromosomes.