Cow genome map
| Conread name: | OvF1-UMC-pd12fol-013-f01 |
| Conread position: | 1-317 |
| Cow position: | chr17:6069569-6069882 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 98 |
| Conread position: | 1-323 |
| Cow position: | chr17:8202973-8203278 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 318, 109 |
| Conread position: | 1-329 |
| Cow position: | chr17:20403450-20403762 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 60 |
| Conread position: | 1-332 |
| Cow position: | chr17:5227643-5227973 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 110 |
| Conread position: | 1-332 |
| Cow position: | chr17:13675270-13674942 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 110, 92 |
| Conread position: | 1-332 |
| Cow position: | chr17:40805826-40806157 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 148 |
| Conread position: | 2-244 |
| Cow position: | chr17:16856497-16856258 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 186, 11 |
| Conread position: | 2-322 |
| Cow position: | chr17:14216006-14215688 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 11 |
| Conread position: | 2-332 |
| Cow position: | chr17:182592-182923 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 111 |
| Conread position: | 2-332 |
| Cow position: | chr17:6260880-6261211 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 109 |
| Conread position: | 2-332 |
| Cow position: | chr17:11086708-11086377 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 110 |
| Conread position: | 2-332 |
| Cow position: | chr17:19267805-19267485 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 11 |
| Conread position: | 2-332 |
| Cow position: | chr17:24028981-24028654 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 11 |
| Conread position: | 2-332 |
| Cow position: | chr17:39049235-39049560 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 11 |
| Conread position: | 3-245 |
| Cow position: | chr17:15324850-15325095 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 116, 99 |
| Conread position: | 3-318 |
| Cow position: | chr17:21418593-21418896 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 3-322 |
| Cow position: | chr17:2247066-2246743 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 19 |
| Conread position: | 3-332 |
| Cow position: | chr17:6120736-6121056 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 108 |
| Conread position: | 3-332 |
| Cow position: | chr17:14240520-14240855 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 108 |
| Conread position: | 3-332 |
| Cow position: | chr17:15851709-15852043 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 108 |
| Conread position: | 3-332 |
| Cow position: | chr17:20099447-20099125 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 108 |
| Conread position: | 4-329 |
| Cow position: | chr17:4675138-4675451 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 47, 76 |
| Conread position: | 5-312 |
| Cow position: | chr17:2149465-2149754 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 101, 113 |
| Conread position: | 6-151 |
| Cow position: | chr17:12669400-12669259 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 6-218 |
| Cow position: | chr17:36916-37125 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 169, 101 |
| Conread position: | 6-329 |
| Cow position: | chr17:19020602-19020915 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 74, 65 |
| Conread position: | 10-223 |
| Cow position: | chr17:19609157-19608940 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 130, 31 |
| Conread position: | 10-332 |
| Cow position: | chr17:2580652-2580972 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 84 |
| Conread position: | 11-266 |
| Cow position: | chr17:6611459-6611205 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 189 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-296 |
| Cow position: | chr17:42266445-42266712 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 11-317 |
| Cow position: | chr17:43989530-43989834 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 99 |
| Conread position: | 11-329 |
| Cow position: | chr17:4083051-4083366 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 100 |
| Conread position: | 11-332 |
| Cow position: | chr17:3655265-3654944 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 99 |
| Conread position: | 11-332 |
| Cow position: | chr17:9080393-9080075 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-332 |
| Cow position: | chr17:11783882-11784203 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-332 |
| Cow position: | chr17:15436810-15437134 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-332 |
| Cow position: | chr17:20390058-20389740 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-332 |
| Cow position: | chr17:21769980-21769661 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 100 |
| Conread position: | 11-332 |
| Cow position: | chr17:23323424-23323098 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-332 |
| Cow position: | chr17:24783190-24783512 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 99 |
| Conread position: | 11-332 |
| Cow position: | chr17:27793750-27793431 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 15-254 |
| Cow position: | chr17:54413-54175 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 16, 97 |
| Conread position: | 15-314 |
| Cow position: | chr17:150852-150562 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 215 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 160, 96 |
| Conread position: | 15-328 |
| Cow position: | chr17:15372260-15372563 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 28, 38 |
| Conread position: | 15-331 |
| Cow position: | chr17:1656815-1656515 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 188, 26 |
| Conread position: | 15-331 |
| Cow position: | chr17:33284801-33284497 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 94 |
| Conread position: | 15-332 |
| Cow position: | chr17:2077963-2077644 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 37 |
| Conread position: | 15-332 |
| Cow position: | chr17:16121521-16121230 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 173, 74 |
| Conread position: | 15-332 |
| Cow position: | chr17:20086732-20086420 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 56 |
| Conread position: | 16-332 |
| Cow position: | chr17:4061131-4061454 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 95 |
| Conread position: | 16-332 |
| Cow position: | chr17:15142322-15142010 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 94 |
| Conread position: | 16-332 |
| Cow position: | chr17:22559003-22559315 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 95 |
| Conread position: | 17-170 |
| Cow position: | chr17:22133233-22133380 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 17-330 |
| Cow position: | chr17:18194841-18195134 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 259, 94 |
| Conread position: | 18-332 |
| Cow position: | chr17:20080836-20080531 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 94 |
| Conread position: | 19-317 |
| Cow position: | chr17:4941680-4941398 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 82, 73 |
| Conread position: | 19-320 |
| Cow position: | chr17:14040005-14039710 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 98 |
| Conread position: | 19-332 |
| Cow position: | chr17:251186-251486 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 22, 76 |
| Conread position: | 20-332 |
| Cow position: | chr17:23038618-23038917 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 25 |
| Conread position: | 38-332 |
| Cow position: | chr17:2174858-2175147 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 281, 73 |
Show alignments to all cow chromosomes.