Cow genome map

Conread name: OvF1-UMC-pd12fol-013-f01

Conread position: 1-229
Cow position: chr2:50982682-50982454 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 172
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 138, 110

Conread position: 1-276
Cow position: chr2:12479396-12479121 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 189
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 126, 156

Conread position: 1-321
Cow position: chr2:45967352-45967039 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 227
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 15, 112

Conread position: 1-322
Cow position: chr2:63291296-63290987 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 228
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 180, 40

Conread position: 2-255
Cow position: chr2:20919271-20919022 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 175
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 110

Conread position: 2-291
Cow position: chr2:5869704-5869422 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 198
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 160, 11

Conread position: 2-321
Cow position: chr2:65937555-65937239 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 11

Conread position: 2-331
Cow position: chr2:28793924-28794243 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 11

Conread position: 2-332
Cow position: chr2:3323886-3323564 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 109

Conread position: 2-332
Cow position: chr2:8119221-8119550 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 11

Conread position: 2-332
Cow position: chr2:28648925-28648604 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 11

Conread position: 3-241
Cow position: chr2:24147539-24147769 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 186, 55

Conread position: 3-301
Cow position: chr2:59413017-59412724 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 215
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 187, 107

Conread position: 3-304
Cow position: chr2:53330438-53330740 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 111

Conread position: 3-315
Cow position: chr2:54738167-54738475 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 40

Conread position: 3-317
Cow position: chr2:49628453-49628765 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 110

Conread position: 3-320
Cow position: chr2:55483474-55483162 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 22

Conread position: 3-322
Cow position: chr2:282015-281690 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 108

Conread position: 3-322
Cow position: chr2:2087490-2087175 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 108

Conread position: 3-322
Cow position: chr2:25028616-25028308 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 107

Conread position: 3-322
Cow position: chr2:34051832-34052152 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 111

Conread position: 3-326
Cow position: chr2:42670029-42669711 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 110

Conread position: 3-329
Cow position: chr2:13045037-13044709 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 108

Conread position: 3-331
Cow position: chr2:247201-246878 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 243
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 185, 13

Conread position: 3-331
Cow position: chr2:16900935-16901260 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 109

Conread position: 3-332
Cow position: chr2:10185552-10185222 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 108

Conread position: 3-332
Cow position: chr2:11158446-11158115 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 91

Conread position: 3-332
Cow position: chr2:12223598-12223272 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 237
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 155, 107

Conread position: 3-332
Cow position: chr2:19012030-19012369 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 3-332
Cow position: chr2:41687446-41687774 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 108

Conread position: 3-332
Cow position: chr2:47811524-47811852 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 109

Conread position: 3-332
Cow position: chr2:57336221-57336551 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 107

Conread position: 3-332
Cow position: chr2:78743259-78743570 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 57

Conread position: 3-332
Cow position: chr2:80292077-80291757 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 108

Conread position: 3-332
Cow position: chr2:81257844-81258183 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 108

Conread position: 6-322
Cow position: chr2:11693165-11693473 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 221
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 59, 42

Conread position: 8-331
Cow position: chr2:36992867-36993175 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 224
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 260, 28

Conread position: 8-332
Cow position: chr2:53540619-53540941 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 102

Conread position: 10-332
Cow position: chr2:25743226-25743545 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 36

Conread position: 11-317
Cow position: chr2:174875-174576 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 222
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 58, 77

Conread position: 11-320
Cow position: chr2:19225564-19225867 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 100

Conread position: 11-321
Cow position: chr2:41048366-41048057 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-322
Cow position: chr2:4402474-4402156 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 232
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 177, 62

Conread position: 11-322
Cow position: chr2:52617159-52617470 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 99

Conread position: 11-332
Cow position: chr2:364384-364061 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 99

Conread position: 11-332
Cow position: chr2:10610962-10610639 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 99

Conread position: 11-332
Cow position: chr2:16074848-16074533 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 100

Conread position: 11-332
Cow position: chr2:17424536-17424865 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 103

Conread position: 11-332
Cow position: chr2:24925249-24925574 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 100

Conread position: 11-332
Cow position: chr2:26905070-26904755 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr2:26922110-26922428 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 99

Conread position: 11-332
Cow position: chr2:28613654-28613323 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 242
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 17, 103

Conread position: 11-332
Cow position: chr2:39422308-39422631 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr2:47037750-47037427 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 103

Conread position: 12-296
Cow position: chr2:36052326-36052057 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 176, 43

Conread position: 12-322
Cow position: chr2:15576153-15575859 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 49

Conread position: 13-320
Cow position: chr2:289096-288792 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 217
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 142, 58

Conread position: 15-317
Cow position: chr2:44990613-44990317 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 218
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 128, 10

Conread position: 15-322
Cow position: chr2:51617941-51618253 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 45

Conread position: 15-324
Cow position: chr2:34563974-34563679 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 89

Conread position: 15-330
Cow position: chr2:38374475-38374784 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 220
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 192, 87

Conread position: 15-330
Cow position: chr2:72187799-72187498 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 233
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 173, 79

Conread position: 16-213
Cow position: chr2:211569-211369 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 97, 176

Conread position: 16-271
Cow position: chr2:3834276-3834027 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 192
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 64, 99

Conread position: 16-283
Cow position: chr2:43445640-43445902 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 101

Conread position: 16-331
Cow position: chr2:47602576-47602259 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 95

Conread position: 17-249
Cow position: chr2:22078478-22078705 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 172, 94

Conread position: 17-321
Cow position: chr2:49605631-49605925 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 76

Conread position: 17-322
Cow position: chr2:1691659-1691957 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 96

Conread position: 17-326
Cow position: chr2:28640154-28639850 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 94

Conread position: 17-326
Cow position: chr2:31298481-31298790 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 90

Conread position: 17-327
Cow position: chr2:574283-574588 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 94

Conread position: 17-331
Cow position: chr2:72681419-72681120 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 225
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 17, 46

Conread position: 17-332
Cow position: chr2:6962207-6962514 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 18-322
Cow position: chr2:45938991-45938703 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 18-331
Cow position: chr2:387089-386776 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 223
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 167, 95

Conread position: 19-332
Cow position: chr2:25887855-25887543 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 94

Conread position: 21-332
Cow position: chr2:44934286-44933980 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 90

Conread position: 25-322
Cow position: chr2:35356715-35356997 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 211
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 159, 30

Conread position: 30-331
Cow position: chr2:40453604-40453899 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 212
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 110, 96

Conread position: 34-320
Cow position: chr2:32434611-32434330 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 11, 74

Conread position: 34-329
Cow position: chr2:33795179-33794864 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 234
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 69, 10

Conread position: 36-331
Cow position: chr2:6673946-6674232 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 152, 15

Conread position: 40-224
Cow position: chr2:14210085-14209902 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 149, 70

Conread position: 45-290
Cow position: chr2:41180857-41181091 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 66, 0

Conread position: 45-332
Cow position: chr2:6006122-6005839 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 66

Conread position: 46-330
Cow position: chr2:6880076-6880354 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 57

Conread position: 47-332
Cow position: chr2:10264684-10264404 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 64

Conread position: 63-332
Cow position: chr2:54693697-54693955 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 199
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 243, 45

Conread position: 64-331
Cow position: chr2:24471889-24471626 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 50

Conread position: 79-332
Cow position: chr2:41154572-41154823 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 110, 32

Show alignments to all cow chromosomes.