Cow genome map
| Conread name: | OvF1-UMC-pd12fol-013-f01 |
| Conread position: | 1-229 |
| Cow position: | chr21:30378-30594 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 188, 60 |
| Conread position: | 1-233 |
| Cow position: | chr21:4588675-4588447 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 16, 117 |
| Conread position: | 1-238 |
| Cow position: | chr21:9893198-9893425 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 234, 116 |
| Conread position: | 1-322 |
| Cow position: | chr21:147231-147548 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 110 |
| Conread position: | 1-332 |
| Cow position: | chr21:47646634-47646967 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 110 |
| Conread position: | 2-314 |
| Cow position: | chr21:3169699-3169994 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 201, 15 |
| Conread position: | 2-317 |
| Cow position: | chr21:28736480-28736787 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 83 |
| Conread position: | 2-320 |
| Cow position: | chr21:5012397-5012090 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 187, 11 |
| Conread position: | 2-324 |
| Cow position: | chr21:26635851-26635531 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 112 |
| Conread position: | 3-158 |
| Cow position: | chr21:1193062-1193213 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 3-222 |
| Cow position: | chr21:18817239-18817020 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 150, 52 |
| Conread position: | 3-254 |
| Cow position: | chr21:5839956-5839706 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 186, 108 |
| Conread position: | 3-313 |
| Cow position: | chr21:27284775-27285083 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 108 |
| Conread position: | 3-321 |
| Cow position: | chr21:33253489-33253806 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 104 |
| Conread position: | 3-332 |
| Cow position: | chr21:3780077-3780410 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 108 |
| Conread position: | 3-332 |
| Cow position: | chr21:30598173-30597834 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 107 |
| Conread position: | 3-332 |
| Cow position: | chr21:35145066-35145383 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 108 |
| Conread position: | 3-332 |
| Cow position: | chr21:37372545-37372871 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 108 |
| Conread position: | 3-332 |
| Cow position: | chr21:40270365-40270036 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 3-332 |
| Cow position: | chr21:42914671-42914996 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 45, 109 |
| Conread position: | 5-322 |
| Cow position: | chr21:27069655-27069337 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 102 |
| Conread position: | 8-316 |
| Cow position: | chr21:20743302-20743011 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 11-187 |
| Cow position: | chr21:29625405-29625232 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 11-223 |
| Cow position: | chr21:11452237-11452025 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 100 |
| Conread position: | 11-237 |
| Cow position: | chr21:468171-468395 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 184, 100 |
| Conread position: | 11-269 |
| Cow position: | chr21:7063817-7064074 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-274 |
| Cow position: | chr21:40683129-40682868 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 129, 47 |
| Conread position: | 11-281 |
| Cow position: | chr21:27036084-27035815 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-320 |
| Cow position: | chr21:2512162-2512470 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-322 |
| Cow position: | chr21:26849703-26849394 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 178, 100 |
| Conread position: | 11-332 |
| Cow position: | chr21:11506926-11507245 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 100 |
| Conread position: | 11-332 |
| Cow position: | chr21:12054703-12054386 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 97 |
| Conread position: | 11-332 |
| Cow position: | chr21:34822897-34822579 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-332 |
| Cow position: | chr21:39426376-39426708 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 99, 126 |
| Conread position: | 12-321 |
| Cow position: | chr21:218343-218631 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 128, 49 |
| Conread position: | 12-324 |
| Cow position: | chr21:47942263-47942574 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 99 |
| Conread position: | 12-332 |
| Cow position: | chr21:10851403-10851713 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 6 |
| Conread position: | 15-322 |
| Cow position: | chr21:4185244-4185542 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 60 |
| Conread position: | 15-331 |
| Cow position: | chr21:27567072-27567376 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 40, 52 |
| Conread position: | 15-331 |
| Cow position: | chr21:45782802-45783105 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 79 |
| Conread position: | 15-332 |
| Cow position: | chr21:6625842-6626165 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 75, 110 |
| Conread position: | 16-329 |
| Cow position: | chr21:1286886-1286581 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 74 |
| Conread position: | 17-215 |
| Cow position: | chr21:21916009-21916207 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 93, 111 |
| Conread position: | 17-329 |
| Cow position: | chr21:36979595-36979277 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 46 |
| Conread position: | 17-332 |
| Cow position: | chr21:10568024-10568339 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 96 |
| Conread position: | 17-332 |
| Cow position: | chr21:31514995-31514680 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 94 |
| Conread position: | 18-329 |
| Cow position: | chr21:5018463-5018769 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 76 |
| Conread position: | 18-329 |
| Cow position: | chr21:38023448-38023757 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 278, 88 |
| Conread position: | 19-332 |
| Cow position: | chr21:2417540-2417848 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 42 |
| Conread position: | 25-332 |
| Cow position: | chr21:2712265-2712551 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 228 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 199, 74 |
| Conread position: | 30-322 |
| Cow position: | chr21:28985440-28985723 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 191, 81 |
| Conread position: | 48-330 |
| Cow position: | chr21:25783204-25783488 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 140, 62 |
Show alignments to all cow chromosomes.