Cow genome map
| Conread name: | OvF1-UMC-pd12fol-013-f01 |
| Conread position: | 1-143 |
| Cow position: | chr28:10072454-10072596 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 107, 117 |
| Conread position: | 1-331 |
| Cow position: | chr28:18100305-18099989 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 31, 36 |
| Conread position: | 1-332 |
| Cow position: | chr28:5567318-5567634 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 110 |
| Conread position: | 1-332 |
| Cow position: | chr28:18519270-18518937 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 110 |
| Conread position: | 1-332 |
| Cow position: | chr28:21360673-21361007 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 112 |
| Conread position: | 1-332 |
| Cow position: | chr28:32791200-32790882 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 110 |
| Conread position: | 2-322 |
| Cow position: | chr28:7827169-7827488 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 23 |
| Conread position: | 2-322 |
| Cow position: | chr28:33253490-33253806 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 11 |
| Conread position: | 2-332 |
| Cow position: | chr28:7741626-7741942 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 2-332 |
| Cow position: | chr28:9179797-9180127 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 11 |
| Conread position: | 2-332 |
| Cow position: | chr28:12151491-12151835 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 11 |
| Conread position: | 2-332 |
| Cow position: | chr28:15034939-15034601 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 11 |
| Conread position: | 2-332 |
| Cow position: | chr28:26425070-26424749 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 11 |
| Conread position: | 3-157 |
| Cow position: | chr28:10470688-10470839 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 3-158 |
| Cow position: | chr28:13374072-13373924 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 3-317 |
| Cow position: | chr28:29821179-29821491 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 108 |
| Conread position: | 3-331 |
| Cow position: | chr28:1506050-1506375 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 108 |
| Conread position: | 3-332 |
| Cow position: | chr28:1166696-1166381 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 72 |
| Conread position: | 3-332 |
| Cow position: | chr28:2085642-2085970 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 108 |
| Conread position: | 3-332 |
| Cow position: | chr28:5750524-5750193 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 111 |
| Conread position: | 3-332 |
| Cow position: | chr28:5765915-5766241 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 88 |
| Conread position: | 3-332 |
| Cow position: | chr28:6778758-6778431 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 107 |
| Conread position: | 3-332 |
| Cow position: | chr28:12409052-12408715 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 53 |
| Conread position: | 3-332 |
| Cow position: | chr28:17389584-17389911 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 122 |
| Conread position: | 3-332 |
| Cow position: | chr28:17666123-17665797 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 108 |
| Conread position: | 3-332 |
| Cow position: | chr28:22259968-22259644 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 110 |
| Conread position: | 5-322 |
| Cow position: | chr28:5938669-5938986 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 106 |
| Conread position: | 6-313 |
| Cow position: | chr28:14232746-14232432 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 157, 108 |
| Conread position: | 8-332 |
| Cow position: | chr28:13461164-13461481 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 103 |
| Conread position: | 10-223 |
| Cow position: | chr28:22232088-22231872 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 130, 101 |
| Conread position: | 11-178 |
| Cow position: | chr28:24883794-24883630 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 11-331 |
| Cow position: | chr28:10460418-10460102 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 79, 99 |
| Conread position: | 11-332 |
| Cow position: | chr28:484404-484084 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 99 |
| Conread position: | 11-332 |
| Cow position: | chr28:1954545-1954865 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 115 |
| Conread position: | 11-332 |
| Cow position: | chr28:24590048-24590367 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 88 |
| Conread position: | 15-169 |
| Cow position: | chr28:698440-698591 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 15-255 |
| Cow position: | chr28:25760699-25760924 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 174, 15 |
| Conread position: | 15-305 |
| Cow position: | chr28:10496337-10496063 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 95 |
| Conread position: | 16-322 |
| Cow position: | chr28:24668806-24669100 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 174, 59 |
| Conread position: | 17-322 |
| Cow position: | chr28:783854-784160 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 94 |
| Conread position: | 17-322 |
| Cow position: | chr28:15587285-15587574 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 298, 92 |
| Conread position: | 17-331 |
| Cow position: | chr28:21566657-21566962 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 77 |
| Conread position: | 17-332 |
| Cow position: | chr28:3191058-3190742 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 94 |
| Conread position: | 18-331 |
| Cow position: | chr28:5803238-5803529 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 297, 95 |
| Conread position: | 19-322 |
| Cow position: | chr28:18146538-18146244 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 159, 32 |
| Conread position: | 20-332 |
| Cow position: | chr28:5112943-5112614 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 25-306 |
| Cow position: | chr28:28750186-28750456 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 110, 86 |
| Conread position: | 41-321 |
| Cow position: | chr28:8719739-8719455 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 70 |
| Conread position: | 45-330 |
| Cow position: | chr28:15684683-15684957 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 57-332 |
| Cow position: | chr28:10580644-10580364 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 50, 95 |
Show alignments to all cow chromosomes.