Cow genome map
| Conread name: | OvF1-UMC-pd12fol-013-f01 |
| Conread position: | 1-317 |
| Cow position: | chr29:26461096-26460790 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 205, 112 |
| Conread position: | 1-322 |
| Cow position: | chr29:15997508-15997189 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 112 |
| Conread position: | 1-322 |
| Cow position: | chr29:26163690-26163373 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 110 |
| Conread position: | 2-264 |
| Cow position: | chr29:9642646-9642384 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 114 |
| Conread position: | 2-313 |
| Cow position: | chr29:31096233-31095925 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 185, 11 |
| Conread position: | 2-317 |
| Cow position: | chr29:25931381-25931074 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 11 |
| Conread position: | 2-319 |
| Cow position: | chr29:45586232-45585942 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 2-322 |
| Cow position: | chr29:38228125-38228439 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 111 |
| Conread position: | 2-331 |
| Cow position: | chr29:2747293-2746987 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 182, 89 |
| Conread position: | 2-332 |
| Cow position: | chr29:14587065-14587393 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 108 |
| Conread position: | 3-219 |
| Cow position: | chr29:43323706-43323915 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 186, 81 |
| Conread position: | 3-243 |
| Cow position: | chr29:7430070-7429825 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 84, 113 |
| Conread position: | 3-254 |
| Cow position: | chr29:47290-47034 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 12, 23 |
| Conread position: | 3-324 |
| Cow position: | chr29:32541243-32541561 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 107 |
| Conread position: | 3-332 |
| Cow position: | chr29:5236165-5236495 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 72 |
| Conread position: | 3-332 |
| Cow position: | chr29:13583227-13583555 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 107 |
| Conread position: | 3-332 |
| Cow position: | chr29:16345355-16345687 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 107 |
| Conread position: | 3-332 |
| Cow position: | chr29:23977271-23977597 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 109 |
| Conread position: | 3-332 |
| Cow position: | chr29:27979776-27979446 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 184, 13 |
| Conread position: | 5-329 |
| Cow position: | chr29:39078557-39078244 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 106 |
| Conread position: | 5-332 |
| Cow position: | chr29:2840195-2839868 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 106 |
| Conread position: | 10-326 |
| Cow position: | chr29:2465700-2465388 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 38 |
| Conread position: | 10-332 |
| Cow position: | chr29:10647094-10646783 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 101 |
| Conread position: | 10-332 |
| Cow position: | chr29:16023725-16024037 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 52 |
| Conread position: | 10-332 |
| Cow position: | chr29:19622127-19621805 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 101 |
| Conread position: | 10-332 |
| Cow position: | chr29:34798654-34798337 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 107 |
| Conread position: | 11-151 |
| Cow position: | chr29:16111542-16111679 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 11-281 |
| Cow position: | chr29:35814819-35814550 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-283 |
| Cow position: | chr29:35297973-35298245 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-331 |
| Cow position: | chr29:251903-252210 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 63, 82 |
| Conread position: | 11-332 |
| Cow position: | chr29:3328490-3328808 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-332 |
| Cow position: | chr29:7845543-7845859 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-332 |
| Cow position: | chr29:18855794-18855476 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-332 |
| Cow position: | chr29:38207519-38207195 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 232 |
| Conread position: | 11-332 |
| Cow position: | chr29:42092916-42093234 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-332 |
| Cow position: | chr29:42939041-42938723 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 100 |
| Conread position: | 12-332 |
| Cow position: | chr29:42803569-42803866 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 232 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 15-260 |
| Cow position: | chr29:32804579-32804811 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 174, 52 |
| Conread position: | 15-311 |
| Cow position: | chr29:32891950-32892228 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 125, 154 |
| Conread position: | 15-323 |
| Cow position: | chr29:14084969-14084666 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 99 |
| Conread position: | 15-324 |
| Cow position: | chr29:5981549-5981245 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 58 |
| Conread position: | 15-332 |
| Cow position: | chr29:21425856-21425546 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 98 |
| Conread position: | 16-283 |
| Cow position: | chr29:8664669-8664935 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 95 |
| Conread position: | 16-332 |
| Cow position: | chr29:5958751-5959049 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 128, 75 |
| Conread position: | 17-244 |
| Cow position: | chr29:10822820-10822594 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 50 |
| Conread position: | 17-317 |
| Cow position: | chr29:20252329-20252614 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 94 |
| Conread position: | 17-331 |
| Cow position: | chr29:12793376-12793698 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 116, 183 |
| Conread position: | 19-300 |
| Cow position: | chr29:45205663-45205950 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 92 |
| Conread position: | 19-324 |
| Cow position: | chr29:30259368-30259073 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 175, 92 |
| Conread position: | 19-332 |
| Cow position: | chr29:19654791-19655094 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 92 |
| Conread position: | 19-332 |
| Cow position: | chr29:31182568-31182882 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 81 |
| Conread position: | 19-332 |
| Cow position: | chr29:45460906-45461221 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 92 |
| Conread position: | 25-329 |
| Cow position: | chr29:2691335-2691630 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 86 |
| Conread position: | 26-332 |
| Cow position: | chr29:6264829-6264526 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 87 |
| Conread position: | 27-277 |
| Cow position: | chr29:3699127-3699366 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 163, 53 |
| Conread position: | 50-300 |
| Cow position: | chr29:36635194-36634933 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 138, 61 |
| Conread position: | 55-322 |
| Cow position: | chr29:19953826-19954087 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 135, 58 |
| Conread position: | 55-332 |
| Cow position: | chr29:2101034-2101313 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 60 |
Show alignments to all cow chromosomes.