Cow genome map
| Conread name: | OvF1-UMC-pd12fol-013-f01 |
| Conread position: | 1-213 |
| Cow position: | chr4:41333552-41333761 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 188, 44 |
| Conread position: | 1-302 |
| Cow position: | chr4:57957862-57958150 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 215, 86 |
| Conread position: | 1-308 |
| Cow position: | chr4:11110413-11110115 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 29 |
| Conread position: | 1-329 |
| Cow position: | chr4:43881970-43882300 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 110 |
| Conread position: | 1-331 |
| Cow position: | chr4:9847348-9847015 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 110 |
| Conread position: | 1-332 |
| Cow position: | chr4:356774-357102 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 110 |
| Conread position: | 1-332 |
| Cow position: | chr4:1049394-1049070 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 110 |
| Conread position: | 1-332 |
| Cow position: | chr4:33071955-33071641 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 74 |
| Conread position: | 2-331 |
| Cow position: | chr4:51042426-51042096 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 187, 13 |
| Conread position: | 2-332 |
| Cow position: | chr4:530271-530597 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 108 |
| Conread position: | 2-332 |
| Cow position: | chr4:6567255-6567572 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 186, 11 |
| Conread position: | 2-332 |
| Cow position: | chr4:10882420-10882741 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 11 |
| Conread position: | 2-332 |
| Cow position: | chr4:13494199-13494519 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 11 |
| Conread position: | 2-332 |
| Cow position: | chr4:31564435-31564090 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 11 |
| Conread position: | 2-332 |
| Cow position: | chr4:34183759-34183461 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 187, 89 |
| Conread position: | 2-332 |
| Cow position: | chr4:46665393-46665726 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 183 |
| Conread position: | 2-332 |
| Cow position: | chr4:57984856-57985185 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 11 |
| Conread position: | 3-155 |
| Cow position: | chr4:48027685-48027834 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 3-317 |
| Cow position: | chr4:41191735-41191425 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 110 |
| Conread position: | 3-322 |
| Cow position: | chr4:25598629-25598304 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 62 |
| Conread position: | 3-330 |
| Cow position: | chr4:16360783-16361097 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 108 |
| Conread position: | 3-331 |
| Cow position: | chr4:69521405-69521716 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 38 |
| Conread position: | 3-332 |
| Cow position: | chr4:12588199-12588521 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 3-332 |
| Cow position: | chr4:16639480-16639803 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 110 |
| Conread position: | 3-332 |
| Cow position: | chr4:17092997-17092669 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 110 |
| Conread position: | 3-332 |
| Cow position: | chr4:18337722-18338047 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 29 |
| Conread position: | 3-332 |
| Cow position: | chr4:18423655-18423323 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 107 |
| Conread position: | 3-332 |
| Cow position: | chr4:26876912-26876590 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 108 |
| Conread position: | 3-332 |
| Cow position: | chr4:36897244-36897569 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 26 |
| Conread position: | 3-332 |
| Cow position: | chr4:43318772-43318443 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 108 |
| Conread position: | 8-325 |
| Cow position: | chr4:4178129-4178435 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 178, 95 |
| Conread position: | 8-332 |
| Cow position: | chr4:1929768-1929442 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 102 |
| Conread position: | 8-332 |
| Cow position: | chr4:17925093-17924768 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 86 |
| Conread position: | 10-332 |
| Cow position: | chr4:44726462-44726771 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 101 |
| Conread position: | 11-190 |
| Cow position: | chr4:30472108-30472284 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 177, 102 |
| Conread position: | 11-202 |
| Cow position: | chr4:603890-604080 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 178, 102 |
| Conread position: | 11-320 |
| Cow position: | chr4:99340-99040 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 99 |
| Conread position: | 11-323 |
| Cow position: | chr4:32213040-32213350 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 98 |
| Conread position: | 11-331 |
| Cow position: | chr4:44780349-44780028 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 102 |
| Conread position: | 11-332 |
| Cow position: | chr4:3126680-3126999 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-332 |
| Cow position: | chr4:4416935-4417245 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 11-332 |
| Cow position: | chr4:5443956-5443637 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-332 |
| Cow position: | chr4:5881032-5881352 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 99 |
| Conread position: | 11-332 |
| Cow position: | chr4:41959772-41960093 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 14 |
| Conread position: | 11-332 |
| Cow position: | chr4:45106336-45106654 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 102 |
| Conread position: | 12-331 |
| Cow position: | chr4:6206478-6206795 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 14-322 |
| Cow position: | chr4:22474228-22474532 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 176, 41 |
| Conread position: | 15-284 |
| Cow position: | chr4:28832442-28832691 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 175, 34 |
| Conread position: | 15-315 |
| Cow position: | chr4:28149301-28149586 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 213, 9 |
| Conread position: | 15-330 |
| Cow position: | chr4:34178356-34178051 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 121 |
| Conread position: | 15-332 |
| Cow position: | chr4:60263280-60262969 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 97 |
| Conread position: | 16-230 |
| Cow position: | chr4:27300603-27300401 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 16-332 |
| Cow position: | chr4:160043-160350 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 94 |
| Conread position: | 16-332 |
| Cow position: | chr4:41955641-41955956 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 97 |
| Conread position: | 17-189 |
| Cow position: | chr4:48027891-48028051 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 17-243 |
| Cow position: | chr4:25735230-25735448 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 17-283 |
| Cow position: | chr4:44924650-44924391 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 17-317 |
| Cow position: | chr4:6489482-6489178 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 95 |
| Conread position: | 17-320 |
| Cow position: | chr4:19005427-19005135 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 58 |
| Conread position: | 17-331 |
| Cow position: | chr4:68110149-68109837 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 162, 94 |
| Conread position: | 18-259 |
| Cow position: | chr4:967194-966952 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 170, 93 |
| Conread position: | 18-330 |
| Cow position: | chr4:9647257-9647552 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 45 |
| Conread position: | 19-332 |
| Cow position: | chr4:12240334-12240031 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 75 |
| Conread position: | 26-321 |
| Cow position: | chr4:6615232-6614942 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 212, 89 |
| Conread position: | 33-323 |
| Cow position: | chr4:41428207-41428495 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 64, 93 |
Show alignments to all cow chromosomes.