Cow genome map
| Conread name: | OvF1-UMC-pd12fol-013-f01 |
| Conread position: | 1-257 |
| Cow position: | chr5:26183804-26184057 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 188, 41 |
| Conread position: | 1-277 |
| Cow position: | chr5:29434754-29434491 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 182, 110 |
| Conread position: | 1-330 |
| Cow position: | chr5:40923676-40923358 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 1-332 |
| Cow position: | chr5:4386204-4386533 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 92 |
| Conread position: | 1-332 |
| Cow position: | chr5:18560442-18560111 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 92 |
| Conread position: | 1-332 |
| Cow position: | chr5:34697565-34697893 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 110 |
| Conread position: | 2-254 |
| Cow position: | chr5:307362-307110 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 145, 108 |
| Conread position: | 2-290 |
| Cow position: | chr5:12642778-12642498 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 11 |
| Conread position: | 2-320 |
| Cow position: | chr5:18885567-18885256 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 16 |
| Conread position: | 2-322 |
| Cow position: | chr5:3503144-3502824 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 109 |
| Conread position: | 2-332 |
| Cow position: | chr5:10855850-10855521 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 11 |
| Conread position: | 2-332 |
| Cow position: | chr5:10919785-10920135 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 91 |
| Conread position: | 2-332 |
| Cow position: | chr5:30580306-30580640 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 11 |
| Conread position: | 2-332 |
| Cow position: | chr5:49519527-49519844 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-291 |
| Cow position: | chr5:46004890-46004605 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 137, 80 |
| Conread position: | 3-317 |
| Cow position: | chr5:55628957-55629272 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 108 |
| Conread position: | 3-322 |
| Cow position: | chr5:7274810-7275123 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 53 |
| Conread position: | 3-322 |
| Cow position: | chr5:24099631-24099941 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 108 |
| Conread position: | 3-329 |
| Cow position: | chr5:57481573-57481250 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 108 |
| Conread position: | 3-331 |
| Cow position: | chr5:31707528-31707858 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 107 |
| Conread position: | 3-332 |
| Cow position: | chr5:4070174-4070514 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 120 |
| Conread position: | 3-332 |
| Cow position: | chr5:10842419-10842090 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 55 |
| Conread position: | 3-332 |
| Cow position: | chr5:37733312-37733645 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 110 |
| Conread position: | 3-332 |
| Cow position: | chr5:48807773-48807437 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 110 |
| Conread position: | 3-332 |
| Cow position: | chr5:54791667-54791336 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 108 |
| Conread position: | 3-332 |
| Cow position: | chr5:59283282-59283612 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 108 |
| Conread position: | 3-332 |
| Cow position: | chr5:64781050-64780718 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 108 |
| Conread position: | 8-274 |
| Cow position: | chr5:41376935-41376669 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 181, 102 |
| Conread position: | 8-332 |
| Cow position: | chr5:50870588-50870913 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 240 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 28, 111 |
| Conread position: | 11-266 |
| Cow position: | chr5:46629205-46628961 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 225, 102 |
| Conread position: | 11-316 |
| Cow position: | chr5:18273735-18274036 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 96 |
| Conread position: | 11-322 |
| Cow position: | chr5:5104196-5104505 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-322 |
| Cow position: | chr5:18664757-18665059 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-322 |
| Cow position: | chr5:46668917-46669213 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 50 |
| Conread position: | 11-322 |
| Cow position: | chr5:47830104-47829794 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-324 |
| Cow position: | chr5:4018221-4017913 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 88 |
| Conread position: | 11-324 |
| Cow position: | chr5:35301072-35301383 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-331 |
| Cow position: | chr5:18549128-18549456 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 103, 123 |
| Conread position: | 11-332 |
| Cow position: | chr5:3965420-3965745 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 102 |
| Conread position: | 11-332 |
| Cow position: | chr5:4757203-4756887 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 305, 99 |
| Conread position: | 11-332 |
| Cow position: | chr5:10813777-10813459 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-332 |
| Cow position: | chr5:18121509-18121186 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 99 |
| Conread position: | 11-332 |
| Cow position: | chr5:23959355-23959039 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 89 |
| Conread position: | 11-332 |
| Cow position: | chr5:26078219-26077901 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-332 |
| Cow position: | chr5:32773739-32774061 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 33 |
| Conread position: | 11-332 |
| Cow position: | chr5:42505978-42506296 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 99 |
| Conread position: | 11-332 |
| Cow position: | chr5:46777367-46777689 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 11-332 |
| Cow position: | chr5:59061610-59061932 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 15-128 |
| Cow position: | chr5:24999012-24998900 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 15-255 |
| Cow position: | chr5:53624945-53624708 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 15-266 |
| Cow position: | chr5:28949904-28949654 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 174, 98 |
| Conread position: | 15-314 |
| Cow position: | chr5:23686915-23686626 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 166, 96 |
| Conread position: | 15-317 |
| Cow position: | chr5:41527818-41527519 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 96 |
| Conread position: | 15-317 |
| Cow position: | chr5:41960759-41960468 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 46 |
| Conread position: | 15-321 |
| Cow position: | chr5:24151757-24152052 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 167, 88 |
| Conread position: | 15-324 |
| Cow position: | chr5:27003213-27003521 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 58 |
| Conread position: | 15-332 |
| Cow position: | chr5:45701292-45701606 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 16-322 |
| Cow position: | chr5:46808290-46808596 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 95 |
| Conread position: | 16-332 |
| Cow position: | chr5:20311373-20311060 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 172, 95 |
| Conread position: | 17-228 |
| Cow position: | chr5:29670137-29670343 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 122, 54 |
| Conread position: | 17-304 |
| Cow position: | chr5:73488580-73488297 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 94 |
| Conread position: | 17-321 |
| Cow position: | chr5:6153923-6153617 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 94 |
| Conread position: | 17-321 |
| Cow position: | chr5:47893565-47893262 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 173, 95 |
| Conread position: | 17-324 |
| Cow position: | chr5:46645919-46646237 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 200 |
| Conread position: | 17-332 |
| Cow position: | chr5:29767107-29767419 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 33 |
| Conread position: | 17-332 |
| Cow position: | chr5:31100442-31100133 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 45 |
| Conread position: | 18-319 |
| Cow position: | chr5:2915430-2915722 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 93 |
| Conread position: | 18-324 |
| Cow position: | chr5:32951882-32952177 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 18-329 |
| Cow position: | chr5:40789050-40789352 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 164, 76 |
| Conread position: | 19-317 |
| Cow position: | chr5:3786908-3787207 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 94 |
| Conread position: | 19-332 |
| Cow position: | chr5:1341051-1340738 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 94 |
| Conread position: | 19-332 |
| Cow position: | chr5:23229974-23230280 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 170, 94 |
| Conread position: | 19-332 |
| Cow position: | chr5:32281784-32281482 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 93 |
| Conread position: | 34-330 |
| Cow position: | chr5:18400701-18400400 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 104, 67 |
| Conread position: | 52-317 |
| Cow position: | chr5:61081198-61080938 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 9 |
| Conread position: | 78-330 |
| Cow position: | chr5:11115710-11115459 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 110, 35 |
| Conread position: | 79-290 |
| Cow position: | chr5:41554290-41554085 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 110, 31 |
Show alignments to all cow chromosomes.