Cow genome map

Conread name: OvF1-UMC-pd12fol-013-f01

Conread position: 1-243
Cow position: chr6:36527405-36527651 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 176
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 113, 209

Conread position: 1-322
Cow position: chr6:51715633-51715952 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 12

Conread position: 1-324
Cow position: chr6:51731184-51731506 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 110

Conread position: 1-332
Cow position: chr6:703318-703645 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 98

Conread position: 1-332
Cow position: chr6:47042112-47041774 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 6

Conread position: 1-332
Cow position: chr6:64717126-64717456 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 110

Conread position: 2-223
Cow position: chr6:24240159-24240386 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 170
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 106, 11

Conread position: 2-233
Cow position: chr6:28276116-28276340 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 175
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 186, 11

Conread position: 2-310
Cow position: chr6:58027781-58028081 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 11

Conread position: 2-321
Cow position: chr6:52694126-52694447 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 109

Conread position: 2-322
Cow position: chr6:39333762-39333453 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 11

Conread position: 2-322
Cow position: chr6:55542157-55541834 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 11

Conread position: 2-329
Cow position: chr6:11273797-11273480 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 236
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 80, 84

Conread position: 2-331
Cow position: chr6:20559996-20559674 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 11

Conread position: 2-332
Cow position: chr6:13945016-13945346 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 11

Conread position: 2-332
Cow position: chr6:15140070-15139740 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 11

Conread position: 2-332
Cow position: chr6:21973775-21974104 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 109

Conread position: 2-332
Cow position: chr6:27471686-27472009 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 11

Conread position: 2-332
Cow position: chr6:34891017-34890689 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 11

Conread position: 3-224
Cow position: chr6:13310251-13310031 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 162
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 55, 60

Conread position: 3-268
Cow position: chr6:15278708-15278449 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 57

Conread position: 3-317
Cow position: chr6:29312607-29312922 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 108

Conread position: 3-319
Cow position: chr6:25215310-25215635 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 108

Conread position: 3-321
Cow position: chr6:69391415-69391103 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 212
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 185, 107

Conread position: 3-322
Cow position: chr6:40553468-40553161 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 88

Conread position: 3-322
Cow position: chr6:41228551-41228867 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 27

Conread position: 3-324
Cow position: chr6:43792466-43792146 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 108

Conread position: 3-330
Cow position: chr6:914739-915065 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 108

Conread position: 3-332
Cow position: chr6:50500-50170 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 107

Conread position: 3-332
Cow position: chr6:1535470-1535144 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 108

Conread position: 3-332
Cow position: chr6:3276266-3275939 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 105

Conread position: 3-332
Cow position: chr6:3888400-3888084 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 108

Conread position: 3-332
Cow position: chr6:5948677-5948348 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 108

Conread position: 3-332
Cow position: chr6:8760189-8759864 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 122

Conread position: 3-332
Cow position: chr6:16053213-16053539 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 107

Conread position: 3-332
Cow position: chr6:28490463-28490133 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 105

Conread position: 3-332
Cow position: chr6:35875606-35875277 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 108

Conread position: 3-332
Cow position: chr6:40866218-40865887 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 108

Conread position: 3-332
Cow position: chr6:51087047-51087373 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 48

Conread position: 3-332
Cow position: chr6:65842721-65843049 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 47

Conread position: 6-321
Cow position: chr6:66745105-66745412 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 55

Conread position: 6-321
Cow position: chr6:67264996-67265303 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 55

Conread position: 6-332
Cow position: chr6:7140234-7139907 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 104

Conread position: 10-314
Cow position: chr6:65897858-65897559 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 103

Conread position: 10-332
Cow position: chr6:30273782-30273460 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 101

Conread position: 11-201
Cow position: chr6:32301132-32300944 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 178, 19

Conread position: 11-292
Cow position: chr6:9264202-9264482 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 204
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 178, 99

Conread position: 11-304
Cow position: chr6:46573891-46574183 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-315
Cow position: chr6:13105174-13105477 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 99

Conread position: 11-318
Cow position: chr6:28104746-28104447 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 100

Conread position: 11-320
Cow position: chr6:330351-330045 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 58

Conread position: 11-321
Cow position: chr6:43618835-43619144 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-322
Cow position: chr6:12665204-12664899 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 223
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 152, 42

Conread position: 11-322
Cow position: chr6:17047167-17047479 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 88

Conread position: 11-322
Cow position: chr6:27170693-27171002 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 99

Conread position: 11-324
Cow position: chr6:65820859-65820548 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 99

Conread position: 11-331
Cow position: chr6:26669750-26669429 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 26

Conread position: 11-332
Cow position: chr6:2375801-2376113 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr6:2877573-2877255 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr6:3784881-3785199 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr6:28187709-28187391 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr6:39910448-39910767 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 99

Conread position: 11-332
Cow position: chr6:40276200-40276516 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 61

Conread position: 11-332
Cow position: chr6:40379520-40379202 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr6:46603132-46602814 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr6:50646070-50645752 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 15-217
Cow position: chr6:2577058-2577256 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 174, 111

Conread position: 15-266
Cow position: chr6:60931804-60932053 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 65, 97

Conread position: 15-318
Cow position: chr6:66232926-66233223 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 96

Conread position: 15-319
Cow position: chr6:48579870-48579572 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 98

Conread position: 15-321
Cow position: chr6:1382202-1381912 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 202
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 186, 110

Conread position: 15-329
Cow position: chr6:58065855-58066160 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 94

Conread position: 15-331
Cow position: chr6:66546605-66546913 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 98

Conread position: 15-332
Cow position: chr6:10609991-10610288 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 234
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 92, 103

Conread position: 15-332
Cow position: chr6:10644854-10645149 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 234
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 62, 89

Conread position: 16-281
Cow position: chr6:14761795-14761543 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 186
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 87, 0

Conread position: 16-290
Cow position: chr6:13316352-13316077 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 45

Conread position: 16-317
Cow position: chr6:17597189-17596893 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 98

Conread position: 16-323
Cow position: chr6:7178170-7177867 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 45

Conread position: 16-332
Cow position: chr6:45587067-45587380 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 94

Conread position: 17-215
Cow position: chr6:17244293-17244096 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 139
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 173, 94

Conread position: 17-298
Cow position: chr6:65915433-65915701 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 208
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 171, 44

Conread position: 17-322
Cow position: chr6:8203297-8203610 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 135

Conread position: 17-322
Cow position: chr6:25792638-25792335 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 25

Conread position: 17-332
Cow position: chr6:1821493-1821193 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 96

Conread position: 18-320
Cow position: chr6:15478294-15478597 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 220
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 15, 97

Conread position: 18-331
Cow position: chr6:15926446-15926141 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 229
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 95, 55

Conread position: 18-332
Cow position: chr6:10250485-10250171 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 81

Conread position: 19-332
Cow position: chr6:58601604-58601912 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 20-249
Cow position: chr6:41203-40973 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 73, 95

Conread position: 25-316
Cow position: chr6:40316710-40316995 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 89

Conread position: 25-330
Cow position: chr6:25360172-25360473 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 214
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 163, 87

Conread position: 30-277
Cow position: chr6:59617243-59617489 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 83

Conread position: 32-322
Cow position: chr6:3487293-3487001 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 79

Conread position: 37-320
Cow position: chr6:34196516-34196797 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 76

Conread position: 38-277
Cow position: chr6:87783-88016 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 162
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 144, 77

Conread position: 44-320
Cow position: chr6:44262323-44262056 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 145, 71

Conread position: 44-332
Cow position: chr6:47048037-47047747 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 66

Conread position: 45-332
Cow position: chr6:21836026-21835756 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 202
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 66, 0

Conread position: 71-332
Cow position: chr6:28703540-28703276 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 197
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 118, 39

Conread position: 73-331
Cow position: chr6:10632722-10632981 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 17, 43

Conread position: 79-332
Cow position: chr6:28766861-28766611 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 31

Show alignments to all cow chromosomes.