Cow genome map

Conread name: OvF1-UMC-pd12fol-013-f01

Conread position: 1-321
Cow position: chr9:5005002-5005335 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 154

Conread position: 1-322
Cow position: chr9:828075-827754 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 112

Conread position: 1-322
Cow position: chr9:59537128-59537449 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 110

Conread position: 1-332
Cow position: chr9:13474738-13474412 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 90

Conread position: 1-332
Cow position: chr9:60276985-60276654 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 74

Conread position: 2-322
Cow position: chr9:22654612-22654930 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 11

Conread position: 2-322
Cow position: chr9:35315846-35315539 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 217
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 188, 110

Conread position: 2-324
Cow position: chr9:21410333-21410653 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 11

Conread position: 2-331
Cow position: chr9:25632985-25632662 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 211
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 24, 110

Conread position: 2-331
Cow position: chr9:30435603-30435938 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 232
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 13, 220

Conread position: 2-332
Cow position: chr9:1995354-1995023 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 11

Conread position: 2-332
Cow position: chr9:3005205-3004886 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 115

Conread position: 2-332
Cow position: chr9:4533530-4533857 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 11

Conread position: 2-332
Cow position: chr9:9014118-9014436 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 109

Conread position: 2-332
Cow position: chr9:19158503-19158170 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 11

Conread position: 2-332
Cow position: chr9:30673411-30673743 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 11

Conread position: 2-332
Cow position: chr9:37161776-37161451 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 11

Conread position: 2-332
Cow position: chr9:42310714-42311041 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 11

Conread position: 2-332
Cow position: chr9:47042990-47043323 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 108

Conread position: 2-332
Cow position: chr9:51181141-51180816 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 11

Conread position: 2-332
Cow position: chr9:51211715-51212041 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 108

Conread position: 3-307
Cow position: chr9:10322838-10323139 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 37

Conread position: 3-314
Cow position: chr9:49303622-49303323 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 218
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 187, 80

Conread position: 3-322
Cow position: chr9:2497942-2497621 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 46

Conread position: 3-322
Cow position: chr9:6250334-6250652 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 72

Conread position: 3-322
Cow position: chr9:28022841-28023151 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 93

Conread position: 3-322
Cow position: chr9:31808612-31808935 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 108

Conread position: 3-322
Cow position: chr9:47003221-47003528 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 110

Conread position: 3-323
Cow position: chr9:10937630-10937945 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 108

Conread position: 3-324
Cow position: chr9:37970172-37969857 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 3-325
Cow position: chr9:16176804-16177105 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 237
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 310, 52

Conread position: 3-331
Cow position: chr9:25188135-25188459 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 111

Conread position: 3-332
Cow position: chr9:17304941-17304612 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 28

Conread position: 3-332
Cow position: chr9:18508787-18508460 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 108

Conread position: 3-332
Cow position: chr9:29027176-29026844 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 107

Conread position: 3-332
Cow position: chr9:32969982-32970306 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 125

Conread position: 3-332
Cow position: chr9:59481761-59481434 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 108

Conread position: 4-317
Cow position: chr9:30488630-30488939 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 225
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 76, 140

Conread position: 5-332
Cow position: chr9:7061046-7060713 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 106

Conread position: 6-261
Cow position: chr9:26736792-26737044 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 193
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 183, 12

Conread position: 6-320
Cow position: chr9:4283005-4283328 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 231
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 92, 141

Conread position: 6-330
Cow position: chr9:54925586-54925899 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 229
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 249, 49

Conread position: 10-332
Cow position: chr9:38677186-38677507 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 101

Conread position: 11-219
Cow position: chr9:5798754-5798548 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 178, 99

Conread position: 11-283
Cow position: chr9:52033738-52034000 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 188
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 177, 60

Conread position: 11-302
Cow position: chr9:28679015-28679305 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 99

Conread position: 11-321
Cow position: chr9:30827780-30828091 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 99

Conread position: 11-324
Cow position: chr9:779778-779467 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 226
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 178, 99

Conread position: 11-331
Cow position: chr9:3764042-3764351 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 219
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 283, 99

Conread position: 11-332
Cow position: chr9:27935420-27935738 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 99

Conread position: 11-332
Cow position: chr9:31065761-31066081 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 11-332
Cow position: chr9:44384303-44384621 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 100

Conread position: 11-332
Cow position: chr9:46859419-46859101 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 15-250
Cow position: chr9:20307963-20307730 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 176
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 79, 33

Conread position: 15-326
Cow position: chr9:3963083-3962765 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 113

Conread position: 15-331
Cow position: chr9:6977380-6977686 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 223
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 131, 15

Conread position: 15-331
Cow position: chr9:26083510-26083207 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 77

Conread position: 15-332
Cow position: chr9:650980-650664 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 96

Conread position: 15-332
Cow position: chr9:44819195-44819506 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 22

Conread position: 16-321
Cow position: chr9:4649557-4649257 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 212
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 272, 26

Conread position: 16-331
Cow position: chr9:46042185-46041890 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 229
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 202, 95

Conread position: 16-332
Cow position: chr9:7158899-7158577 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 136

Conread position: 16-332
Cow position: chr9:20939367-20939674 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 94

Conread position: 16-332
Cow position: chr9:25034516-25034198 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 94

Conread position: 17-322
Cow position: chr9:4836292-4835989 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 218
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 102, 93

Conread position: 17-322
Cow position: chr9:27783237-27783538 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 94

Conread position: 17-330
Cow position: chr9:29627708-29627391 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 90

Conread position: 17-331
Cow position: chr9:2053972-2054277 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 228
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 77, 44

Conread position: 17-331
Cow position: chr9:3727652-3727954 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 224
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 100, 34

Conread position: 19-332
Cow position: chr9:1250950-1250639 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 92

Conread position: 30-321
Cow position: chr9:39730996-39730711 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 203
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 246, 81

Conread position: 37-322
Cow position: chr9:25903574-25903876 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 214
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 150, 73

Conread position: 37-331
Cow position: chr9:8402439-8402725 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 218
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 94, 41

Conread position: 38-322
Cow position: chr9:1075119-1074825 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 209
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 151, 72

Conread position: 38-331
Cow position: chr9:35595009-35594721 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 207
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 106, 80

Conread position: 48-324
Cow position: chr9:3543947-3544234 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 211
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 65, 107

Show alignments to all cow chromosomes.