Cow genome map
| Conread name: | OvF2-UMC-pd0fol-009-c04 |
| Conread position: | 1-370 |
| Cow position: | chr1:86599855-86599494 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 262 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 174, 96 |
| Conread position: | 2-176 |
| Cow position: | chr1:70381385-70381217 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 2-205 |
| Cow position: | chr1:12466003-12465794 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 2-334 |
| Cow position: | chr1:49133012-49132691 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 99 |
| Conread position: | 2-350 |
| Cow position: | chr1:18024654-18024322 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 49, 90 |
| Conread position: | 2-350 |
| Cow position: | chr1:42888317-42887996 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 39 |
| Conread position: | 2-362 |
| Cow position: | chr1:100420761-100421108 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 39 |
| Conread position: | 2-363 |
| Cow position: | chr1:51967415-51967756 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 99 |
| Conread position: | 2-366 |
| Cow position: | chr1:24922364-24921999 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 96 |
| Conread position: | 2-367 |
| Cow position: | chr1:53519826-53520176 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 48 |
| Conread position: | 2-368 |
| Cow position: | chr1:2764278-2764637 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 259 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 186, 86 |
| Conread position: | 2-368 |
| Cow position: | chr1:3339828-3340183 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 84 |
| Conread position: | 2-368 |
| Cow position: | chr1:22012799-22012448 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 103 |
| Conread position: | 2-368 |
| Cow position: | chr1:24654993-24655345 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 97 |
| Conread position: | 2-368 |
| Cow position: | chr1:30079104-30079456 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 92 |
| Conread position: | 2-368 |
| Cow position: | chr1:31342235-31341893 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 2-368 |
| Cow position: | chr1:33716121-33716475 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 254 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 188, 99 |
| Conread position: | 2-368 |
| Cow position: | chr1:38279579-38279222 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 100 |
| Conread position: | 2-368 |
| Cow position: | chr1:40510097-40509743 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 260 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 141, 25 |
| Conread position: | 2-368 |
| Cow position: | chr1:55145206-55145560 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 100 |
| Conread position: | 2-368 |
| Cow position: | chr1:56425076-56425425 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 53 |
| Conread position: | 2-368 |
| Cow position: | chr1:56746036-56746399 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 40, 108 |
| Conread position: | 2-368 |
| Cow position: | chr1:61563198-61563563 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 95 |
| Conread position: | 2-368 |
| Cow position: | chr1:63044988-63044643 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 277, 79 |
| Conread position: | 2-368 |
| Cow position: | chr1:68818744-68818396 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 70 |
| Conread position: | 2-368 |
| Cow position: | chr1:70535302-70534949 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 99 |
| Conread position: | 2-368 |
| Cow position: | chr1:71792091-71792444 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 253 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 188, 99 |
| Conread position: | 2-368 |
| Cow position: | chr1:72864110-72864460 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 95 |
| Conread position: | 2-368 |
| Cow position: | chr1:90605715-90605342 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 99 |
| Conread position: | 2-368 |
| Cow position: | chr1:100888346-100887993 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 188, 98 |
| Conread position: | 2-370 |
| Cow position: | chr1:22481499-22481141 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 99 |
| Conread position: | 2-370 |
| Cow position: | chr1:22727453-22727818 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 95 |
| Conread position: | 2-370 |
| Cow position: | chr1:58440136-58439778 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 78 |
| Conread position: | 2-370 |
| Cow position: | chr1:58528433-58528788 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 104 |
| Conread position: | 3-255 |
| Cow position: | chr1:54295981-54295731 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 206 |
| Conread position: | 3-259 |
| Cow position: | chr1:21353155-21352895 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 183, 93 |
| Conread position: | 3-341 |
| Cow position: | chr1:38417985-38418310 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 187, 99 |
| Conread position: | 3-368 |
| Cow position: | chr1:13579610-13579263 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 23 |
| Conread position: | 3-368 |
| Cow position: | chr1:19146004-19145646 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 47 |
| Conread position: | 3-368 |
| Cow position: | chr1:21114259-21113908 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 190, 98 |
| Conread position: | 3-368 |
| Cow position: | chr1:21132702-21132341 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 262 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 145, 52 |
| Conread position: | 3-368 |
| Cow position: | chr1:34684644-34685015 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 104 |
| Conread position: | 3-368 |
| Cow position: | chr1:51444406-51444759 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 22 |
| Conread position: | 3-370 |
| Cow position: | chr1:53649814-53650170 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 98 |
| Conread position: | 3-371 |
| Cow position: | chr1:79590021-79590369 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 187, 71 |
| Conread position: | 3-372 |
| Cow position: | chr1:39480322-39479972 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 4-310 |
| Cow position: | chr1:12872291-12871997 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 186, 16 |
| Conread position: | 4-340 |
| Cow position: | chr1:51982592-51982936 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 103, 16 |
| Conread position: | 4-349 |
| Cow position: | chr1:53311393-53311727 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 184, 97 |
| Conread position: | 4-368 |
| Cow position: | chr1:11289226-11288872 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 97 |
| Conread position: | 4-368 |
| Cow position: | chr1:35598647-35598296 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 97 |
| Conread position: | 4-368 |
| Cow position: | chr1:53371521-53371884 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 171, 97 |
| Conread position: | 5-368 |
| Cow position: | chr1:98534761-98535132 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 96 |
| Conread position: | 14-368 |
| Cow position: | chr1:22789574-22789919 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 150, 89 |
| Conread position: | 14-368 |
| Cow position: | chr1:30034800-30035129 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 14-368 |
| Cow position: | chr1:85143051-85142700 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 91 |
| Conread position: | 14-368 |
| Cow position: | chr1:95474727-95474387 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 37 |
| Conread position: | 14-371 |
| Cow position: | chr1:22529635-22529293 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 250 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 176, 87 |
| Conread position: | 24-368 |
| Cow position: | chr1:50764343-50764662 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 27-368 |
| Cow position: | chr1:85773394-85773721 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 74 |
| Conread position: | 34-366 |
| Cow position: | chr1:99582264-99581943 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 143, 72 |
| Conread position: | 35-370 |
| Cow position: | chr1:46694712-46694390 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 81, 26 |
| Conread position: | 42-368 |
| Cow position: | chr1:62508048-62507730 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 177, 59 |
| Conread position: | 42-370 |
| Cow position: | chr1:52371173-52371489 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 148, 59 |
| Conread position: | 42-370 |
| Cow position: | chr1:52379494-52379810 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 148, 59 |
| Conread position: | 43-372 |
| Cow position: | chr1:63239897-63240214 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 147, 18 |
| Conread position: | 47-368 |
| Cow position: | chr1:52434228-52434537 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 11, 57 |
| Conread position: | 48-361 |
| Cow position: | chr1:24580615-24580914 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 8 |
| Conread position: | 55-370 |
| Cow position: | chr1:19484027-19483729 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 68-372 |
| Cow position: | chr1:71690783-71691072 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 122, 33 |
| Conread position: | 80-368 |
| Cow position: | chr1:68950646-68950920 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 21 |
| Conread position: | 92-350 |
| Cow position: | chr1:22253325-22253572 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 98, 13 |
| Conread position: | 98-338 |
| Cow position: | chr1:26838211-26838441 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 154 |
| Conread position: | 100-358 |
| Cow position: | chr1:83136200-83136449 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 90, 140 |
| Conread position: | 124-368 |
| Cow position: | chr1:61282704-61282938 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 40, 145 |
| Conread position: | 158-368 |
| Cow position: | chr1:98559229-98559428 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 184-344 |
| Cow position: | chr1:24202802-24202654 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 66 |
| Conread position: | 187-367 |
| Cow position: | chr1:71667132-71666958 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 61, 75 |
Show alignments to all cow chromosomes.