Cow genome map

Conread name: OvF2-UMC-pd0fol-009-c04

Conread position: 1-368
Cow position: chr11:67599402-67599748 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 102

Conread position: 2-199
Cow position: chr11:45633274-45633083 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 160
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 188, 75

Conread position: 2-255
Cow position: chr11:30057031-30057286 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 95

Conread position: 2-261
Cow position: chr11:41599864-41599597 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 95

Conread position: 2-349
Cow position: chr11:17782203-17781871 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 99

Conread position: 2-349
Cow position: chr11:38640775-38641109 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 240
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 158, 95

Conread position: 2-359
Cow position: chr11:54728288-54728632 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 250
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 188, 99

Conread position: 2-361
Cow position: chr11:22933798-22933456 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 248
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 191, 9

Conread position: 2-366
Cow position: chr11:44254898-44255249 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 249
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 188, 98

Conread position: 2-368
Cow position: chr11:16229823-16229476 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 2-368
Cow position: chr11:18105862-18105507 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 255
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 203, 28

Conread position: 2-368
Cow position: chr11:19507154-19507505 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 89

Conread position: 2-368
Cow position: chr11:24600814-24601178 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 95

Conread position: 2-368
Cow position: chr11:26550302-26550654 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 13

Conread position: 2-368
Cow position: chr11:48427972-48428321 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 53

Conread position: 2-368
Cow position: chr11:74928627-74928974 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 2-368
Cow position: chr11:84773989-84774343 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 94

Conread position: 2-370
Cow position: chr11:260324-259964 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 78

Conread position: 2-370
Cow position: chr11:12763365-12763007 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 95

Conread position: 2-370
Cow position: chr11:25808923-25808566 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 262
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 188, 94

Conread position: 2-370
Cow position: chr11:58804996-58804644 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 83

Conread position: 2-372
Cow position: chr11:21729196-21728841 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 100

Conread position: 2-372
Cow position: chr11:27833933-27833574 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 251
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 72, 101

Conread position: 3-370
Cow position: chr11:40458000-40458356 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 250
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 83, 103

Conread position: 4-368
Cow position: chr11:4206004-4206350 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 77

Conread position: 4-370
Cow position: chr11:27660060-27660418 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 69

Conread position: 4-370
Cow position: chr11:75354029-75354386 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 98

Conread position: 14-350
Cow position: chr11:26068283-26067949 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 239
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 72, 245

Conread position: 14-350
Cow position: chr11:37279738-37279420 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 233
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 176, 87

Conread position: 14-363
Cow position: chr11:1667463-1667794 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 247
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 176, 26

Conread position: 14-367
Cow position: chr11:30700330-30700671 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 246
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 176, 87

Conread position: 14-370
Cow position: chr11:17980456-17980116 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 252
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 176, 87

Conread position: 14-372
Cow position: chr11:19490375-19490723 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 237
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 85, 13

Conread position: 16-358
Cow position: chr11:68130248-68130569 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 234
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 9, 87

Conread position: 17-368
Cow position: chr11:2835103-2835438 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 241
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 175, 84

Conread position: 22-368
Cow position: chr11:56652395-56652064 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 251
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 33, 45

Conread position: 23-368
Cow position: chr11:31836035-31836362 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 249
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 125, 63

Conread position: 26-370
Cow position: chr11:77746358-77746026 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 246
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 156, 54

Conread position: 33-365
Cow position: chr11:49935893-49935573 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 68

Conread position: 35-350
Cow position: chr11:4053478-4053191 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 218
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 19, 0

Conread position: 36-368
Cow position: chr11:26482430-26482751 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 65

Conread position: 42-372
Cow position: chr11:30790936-30790611 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 220
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 6, 40

Conread position: 50-342
Cow position: chr11:38069167-38069451 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 212
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 68, 51

Conread position: 51-366
Cow position: chr11:21853378-21853075 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 50

Conread position: 55-368
Cow position: chr11:63167638-63167345 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 48

Conread position: 61-370
Cow position: chr11:56227812-56228109 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 40

Conread position: 68-370
Cow position: chr11:3230214-3230500 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 33

Conread position: 75-368
Cow position: chr11:46412531-46412813 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 208
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 117, 26

Conread position: 81-363
Cow position: chr11:1626251-1625985 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 214
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 108, 21

Conread position: 87-368
Cow position: chr11:43917341-43917612 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 196
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 15, 165

Conread position: 88-368
Cow position: chr11:21372171-21371903 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 198
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 102, 13

Conread position: 89-368
Cow position: chr11:10214639-10214342 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 224
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 69, 12

Conread position: 106-368
Cow position: chr11:70602350-70602105 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 193
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 87, 23

Conread position: 110-368
Cow position: chr11:8498998-8499244 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 181
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 79, 20

Conread position: 117-370
Cow position: chr11:52298225-52297982 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 197
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 73, 135

Conread position: 122-370
Cow position: chr11:2308856-2309099 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 191
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 39, 139

Conread position: 149-358
Cow position: chr11:37069277-37069069 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 145
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 100, 120

Show alignments to all cow chromosomes.