Cow genome map
| Conread name: | OvF2-UMC-pd0fol-009-c04 |
| Conread position: | 2-195 |
| Cow position: | chr21:32300565-32300754 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 184, 61 |
| Conread position: | 2-317 |
| Cow position: | chr21:27428829-27428530 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 100 |
| Conread position: | 2-343 |
| Cow position: | chr21:27375392-27375723 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 2-353 |
| Cow position: | chr21:42460770-42460435 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 2-366 |
| Cow position: | chr21:9895649-9895996 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 2-368 |
| Cow position: | chr21:44990-45343 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 149, 100 |
| Conread position: | 2-368 |
| Cow position: | chr21:4586392-4586036 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 84 |
| Conread position: | 2-368 |
| Cow position: | chr21:17143975-17144329 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 99 |
| Conread position: | 2-368 |
| Cow position: | chr21:22719810-22719460 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 261 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 141, 95 |
| Conread position: | 2-368 |
| Cow position: | chr21:22855200-22855539 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 95 |
| Conread position: | 2-368 |
| Cow position: | chr21:25986705-25987055 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 48 |
| Conread position: | 2-368 |
| Cow position: | chr21:27066312-27065958 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 253 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 189, 101 |
| Conread position: | 2-368 |
| Cow position: | chr21:28908853-28908501 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 95 |
| Conread position: | 2-368 |
| Cow position: | chr21:31252277-31252628 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 191, 77 |
| Conread position: | 2-368 |
| Cow position: | chr21:37147485-37147137 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 31 |
| Conread position: | 2-368 |
| Cow position: | chr21:48530455-48530812 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 99 |
| Conread position: | 2-370 |
| Cow position: | chr21:2905502-2905150 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 99 |
| Conread position: | 2-370 |
| Cow position: | chr21:22463478-22463834 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 95 |
| Conread position: | 2-370 |
| Cow position: | chr21:33983988-33983632 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 95 |
| Conread position: | 2-370 |
| Cow position: | chr21:47360882-47360530 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 100 |
| Conread position: | 2-371 |
| Cow position: | chr21:27125430-27125074 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 257 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 188, 11 |
| Conread position: | 2-372 |
| Cow position: | chr21:39400528-39400880 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 57 |
| Conread position: | 3-367 |
| Cow position: | chr21:34657285-34657630 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 26 |
| Conread position: | 3-370 |
| Cow position: | chr21:31275635-31275985 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 26 |
| Conread position: | 4-310 |
| Cow position: | chr21:14726980-14727268 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 67 |
| Conread position: | 4-368 |
| Cow position: | chr21:24826845-24826490 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 6-358 |
| Cow position: | chr21:18837354-18837019 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 44 |
| Conread position: | 6-368 |
| Cow position: | chr21:43007-43343 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 184, 95 |
| Conread position: | 8-359 |
| Cow position: | chr21:1766226-1765897 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 250 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 65, 99 |
| Conread position: | 14-368 |
| Cow position: | chr21:3252924-3253274 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 167, 41 |
| Conread position: | 14-368 |
| Cow position: | chr21:33832680-33832335 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 87 |
| Conread position: | 14-369 |
| Cow position: | chr21:4559770-4559432 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 15-365 |
| Cow position: | chr21:29253892-29253555 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 166, 74 |
| Conread position: | 15-368 |
| Cow position: | chr21:4188838-4189183 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 30 |
| Conread position: | 23-368 |
| Cow position: | chr21:47532043-47532374 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 35-350 |
| Cow position: | chr21:32573299-32573605 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 32, 67 |
| Conread position: | 37-370 |
| Cow position: | chr21:2293860-2293539 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 153, 64 |
| Conread position: | 44-367 |
| Cow position: | chr21:6623143-6623453 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 99, 57 |
| Conread position: | 45-368 |
| Cow position: | chr21:46974400-46974093 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 99-345 |
| Cow position: | chr21:28616649-28616874 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 105-358 |
| Cow position: | chr21:1057851-1058093 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 85, 146 |
| Conread position: | 163-370 |
| Cow position: | chr21:16768676-16768480 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 270-368 |
| Cow position: | chr21:38899988-38900085 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 82 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
Show alignments to all cow chromosomes.