Cow genome map
| Conread name: | OvF2-UMC-pd0fol-009-c04 |
| Conread position: | 1-367 |
| Cow position: | chr3:77550007-77550360 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 100 |
| Conread position: | 1-368 |
| Cow position: | chr3:12673331-12672986 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 2-185 |
| Cow position: | chr3:59332498-59332671 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 2-255 |
| Cow position: | chr3:84198822-84199074 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 43 |
| Conread position: | 2-341 |
| Cow position: | chr3:30908842-30909183 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 101 |
| Conread position: | 2-368 |
| Cow position: | chr3:6854588-6854211 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 99 |
| Conread position: | 2-368 |
| Cow position: | chr3:16657828-16657482 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 2-368 |
| Cow position: | chr3:18759383-18759013 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 156 |
| Conread position: | 2-368 |
| Cow position: | chr3:27547409-27547046 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 43 |
| Conread position: | 2-368 |
| Cow position: | chr3:31423088-31422729 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 259 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 188, 99 |
| Conread position: | 2-368 |
| Cow position: | chr3:36875022-36874668 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 95 |
| Conread position: | 2-368 |
| Cow position: | chr3:37487003-37486657 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 162, 99 |
| Conread position: | 2-368 |
| Cow position: | chr3:37627930-37628277 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 2-368 |
| Cow position: | chr3:42993838-42993479 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 127, 99 |
| Conread position: | 2-368 |
| Cow position: | chr3:48603290-48603654 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 75 |
| Conread position: | 2-368 |
| Cow position: | chr3:61677577-61677927 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 73 |
| Conread position: | 2-370 |
| Cow position: | chr3:26566819-26567170 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 53 |
| Conread position: | 2-372 |
| Cow position: | chr3:18886498-18886854 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 99 |
| Conread position: | 3-201 |
| Cow position: | chr3:32703136-32702942 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 160 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 3-342 |
| Cow position: | chr3:35854544-35854202 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 100 |
| Conread position: | 3-367 |
| Cow position: | chr3:39327588-39327937 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 100 |
| Conread position: | 3-368 |
| Cow position: | chr3:24455478-24455145 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 99 |
| Conread position: | 3-368 |
| Cow position: | chr3:26919770-26920112 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 69 |
| Conread position: | 3-368 |
| Cow position: | chr3:50921079-50921430 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 3-368 |
| Cow position: | chr3:57742556-57742905 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 176, 13 |
| Conread position: | 3-368 |
| Cow position: | chr3:72669522-72669167 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 98 |
| Conread position: | 3-370 |
| Cow position: | chr3:3885157-3884792 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 69 |
| Conread position: | 4-368 |
| Cow position: | chr3:6785358-6785709 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 97 |
| Conread position: | 4-368 |
| Cow position: | chr3:14438944-14438595 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 28, 98 |
| Conread position: | 4-368 |
| Cow position: | chr3:41019273-41018918 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 98 |
| Conread position: | 6-368 |
| Cow position: | chr3:12676598-12676247 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 33 |
| Conread position: | 8-368 |
| Cow position: | chr3:15663399-15663056 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 14-363 |
| Cow position: | chr3:3031296-3031619 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 41 |
| Conread position: | 14-368 |
| Cow position: | chr3:26722761-26722419 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 176, 87 |
| Conread position: | 14-368 |
| Cow position: | chr3:45977553-45977892 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 252 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 176, 88 |
| Conread position: | 14-368 |
| Cow position: | chr3:46752900-46753239 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 176, 25 |
| Conread position: | 15-349 |
| Cow position: | chr3:34116320-34115989 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 234 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 133, 86 |
| Conread position: | 15-368 |
| Cow position: | chr3:6688879-6689222 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 86 |
| Conread position: | 16-368 |
| Cow position: | chr3:19795039-19794699 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 85 |
| Conread position: | 25-368 |
| Cow position: | chr3:2852175-2851853 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 29-368 |
| Cow position: | chr3:72603281-72603608 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 113, 72 |
| Conread position: | 31-368 |
| Cow position: | chr3:33326450-33326782 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 30 |
| Conread position: | 34-348 |
| Cow position: | chr3:63688839-63688538 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 156, 55 |
| Conread position: | 39-372 |
| Cow position: | chr3:66977750-66978056 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 151, 37 |
| Conread position: | 45-367 |
| Cow position: | chr3:173588-173896 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 84, 36 |
| Conread position: | 45-370 |
| Cow position: | chr3:39214454-39214771 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 142, 56 |
| Conread position: | 56-370 |
| Cow position: | chr3:55461564-55461269 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 305, 49 |
| Conread position: | 75-368 |
| Cow position: | chr3:44536876-44536579 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 75-368 |
| Cow position: | chr3:70322561-70322282 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 30 |
| Conread position: | 76-368 |
| Cow position: | chr3:23010466-23010748 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 72, 25 |
| Conread position: | 88-367 |
| Cow position: | chr3:37451225-37451493 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 102, 13 |
| Conread position: | 97-368 |
| Cow position: | chr3:70336541-70336287 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 105-370 |
| Cow position: | chr3:25753395-25753647 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 146 |
| Conread position: | 117-368 |
| Cow position: | chr3:72390071-72390310 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 73, 113 |
| Conread position: | 124-368 |
| Cow position: | chr3:76136478-76136714 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 66, 149 |
| Conread position: | 156-366 |
| Cow position: | chr3:67745589-67745381 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 167-368 |
| Cow position: | chr3:2507438-2507249 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 85 |
| Conread position: | 178-368 |
| Cow position: | chr3:48528240-48528427 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 82 |
| Conread position: | 183-367 |
| Cow position: | chr3:16005588-16005410 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 184-371 |
| Cow position: | chr3:47340919-47340741 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 186-368 |
| Cow position: | chr3:60891486-60891657 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 17, 0 |
Show alignments to all cow chromosomes.