Cow genome map
| Conread name: | OvF2-UMC-pd0fol-009-c04 |
| Conread position: | 1-246 |
| Cow position: | chr4:60651436-60651681 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 96 |
| Conread position: | 1-342 |
| Cow position: | chr4:6000592-6000261 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 98 |
| Conread position: | 2-179 |
| Cow position: | chr4:5047687-5047503 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 73, 98 |
| Conread position: | 2-188 |
| Cow position: | chr4:36669426-36669600 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-266 |
| Cow position: | chr4:50977385-50977635 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 188, 70 |
| Conread position: | 2-349 |
| Cow position: | chr4:27293046-27292709 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 218 |
| Conread position: | 2-361 |
| Cow position: | chr4:10044923-10044576 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 175, 99 |
| Conread position: | 2-365 |
| Cow position: | chr4:19236913-19237262 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 99 |
| Conread position: | 2-367 |
| Cow position: | chr4:3252700-3252355 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 2-367 |
| Cow position: | chr4:26468076-26468424 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 91 |
| Conread position: | 2-368 |
| Cow position: | chr4:3284514-3284160 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 99 |
| Conread position: | 2-368 |
| Cow position: | chr4:4379228-4379571 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 121, 99 |
| Conread position: | 2-368 |
| Cow position: | chr4:18096768-18096399 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 101 |
| Conread position: | 2-368 |
| Cow position: | chr4:26399634-26399984 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 2-368 |
| Cow position: | chr4:27539510-27539860 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 91 |
| Conread position: | 2-368 |
| Cow position: | chr4:30508048-30508396 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 36 |
| Conread position: | 2-368 |
| Cow position: | chr4:41037672-41038023 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 91 |
| Conread position: | 2-368 |
| Cow position: | chr4:44901102-44901451 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 70 |
| Conread position: | 2-368 |
| Cow position: | chr4:46711762-46711406 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 188, 99 |
| Conread position: | 2-368 |
| Cow position: | chr4:52086000-52086355 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 99 |
| Conread position: | 2-368 |
| Cow position: | chr4:55510023-55509657 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 67, 261 |
| Conread position: | 2-368 |
| Cow position: | chr4:65581359-65581717 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 99 |
| Conread position: | 2-368 |
| Cow position: | chr4:65918533-65918877 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 2-370 |
| Cow position: | chr4:3849443-3849804 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 95 |
| Conread position: | 2-370 |
| Cow position: | chr4:4086518-4086170 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 2-370 |
| Cow position: | chr4:11192799-11193158 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 101 |
| Conread position: | 2-370 |
| Cow position: | chr4:16832703-16832350 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 146, 12 |
| Conread position: | 2-370 |
| Cow position: | chr4:22074232-22073899 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 54 |
| Conread position: | 4-350 |
| Cow position: | chr4:44593546-44593221 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 4-368 |
| Cow position: | chr4:27518526-27518160 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 97 |
| Conread position: | 4-368 |
| Cow position: | chr4:38180606-38180952 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 7-372 |
| Cow position: | chr4:42639446-42639094 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 12, 97 |
| Conread position: | 14-358 |
| Cow position: | chr4:22850815-22850487 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 246 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 176, 88 |
| Conread position: | 14-365 |
| Cow position: | chr4:25225842-25226166 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 14-368 |
| Cow position: | chr4:1028375-1028025 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 87 |
| Conread position: | 14-368 |
| Cow position: | chr4:1935665-1935330 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 176, 91 |
| Conread position: | 16-350 |
| Cow position: | chr4:9712586-9712904 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 166, 14 |
| Conread position: | 16-367 |
| Cow position: | chr4:11108216-11107890 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 251 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 17-368 |
| Cow position: | chr4:19956884-19957225 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 84 |
| Conread position: | 20-364 |
| Cow position: | chr4:6168109-6167779 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 245 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 170, 81 |
| Conread position: | 20-371 |
| Cow position: | chr4:2139923-2140259 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 37 |
| Conread position: | 29-346 |
| Cow position: | chr4:17833969-17833669 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 31-368 |
| Cow position: | chr4:15463553-15463234 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 70 |
| Conread position: | 31-372 |
| Cow position: | chr4:25228062-25228390 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 116, 71 |
| Conread position: | 34-368 |
| Cow position: | chr4:21363956-21364266 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 42-365 |
| Cow position: | chr4:14142191-14142520 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 59 |
| Conread position: | 42-367 |
| Cow position: | chr4:1500205-1499894 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 147, 59 |
| Conread position: | 44-368 |
| Cow position: | chr4:19140889-19141200 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 22 |
| Conread position: | 55-368 |
| Cow position: | chr4:11217660-11217952 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 115, 46 |
| Conread position: | 68-341 |
| Cow position: | chr4:61724152-61724410 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 113, 7 |
| Conread position: | 86-368 |
| Cow position: | chr4:16606247-16605977 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 15 |
| Conread position: | 97-359 |
| Cow position: | chr4:11200806-11201056 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 45, 59 |
| Conread position: | 97-368 |
| Cow position: | chr4:39457598-39457867 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 93, 107 |
| Conread position: | 97-368 |
| Cow position: | chr4:43896568-43896299 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 93, 146 |
| Conread position: | 184-370 |
| Cow position: | chr4:54170450-54170625 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 186-371 |
| Cow position: | chr4:22102324-22102153 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 140, 63 |
| Conread position: | 187-368 |
| Cow position: | chr4:61651535-61651358 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 246-368 |
| Cow position: | chr4:22014344-22014224 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
Show alignments to all cow chromosomes.